BAC Information

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BAC

Clone NameB6Ng01-060E20
Chromosome5 (Build37)
Map Location 122,116,059 - 122,219,752
singlet/doubletdoublet
Overlap geneBrap, Atxn2
Upstream geneRasal1, Dtx1, Oas2, Oas3, Oas1e, Oas1c, Oas1b, Oas1f, Oas1h, Oas1g, Oas1a, Oas1d, Oas1i, Rph3a, LOC665299, Ptpn11, Rpl6, LOC100039686, EG545802, AU042671, Trafd1, C330023M02Rik, Erp29, Tmem116, Adam1b, Adam1a, Mapkapk5, Aldh2, 9330129D05Rik, Acad10
Downstream geneSh2b3, A230106M15Rik, Cutl2, LOC100042693, Myl2, Ccdc63, Ppp1cc, Hvcn1, Tect1, Pptc7, Rad9b, Vps29, 1500011H22Rik, Atpbd1c, Arpc3, Anapc7, Atp2a2, Ift81, P2rx7, P2rx4, Camkk2
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-060E20.bB6Ng01-060E20.g
ACCDH881312DH881313
length1,1381,110
definitionDH881312|Mus musculus domesticus DNA, BAC clone: B6Ng01-060E20, 5' end.DH881313|Mus musculus domesticus DNA, BAC clone: B6Ng01-060E20, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(122,116,059 - 122,117,214)(122,218,628 - 122,219,752)
sequence
gaattcacagatatgtctgcatttgtctctcaagttttggaactaccata
cccaataaaaacaaaaacaaaaacaaaaaaaaccctaaatgaccaaatca
gccatgagtttaacctggaatcttctgatctatatttagaggcattaccc
attgttcctcttgcctgcactcccataatttaaaaagcatttttaacgat
tatttttttggtgaagattggtcccagcacctcacacgtgctcctccgtt
gccgacacccctggcccctttttaccttgttatattttgagacggtctcg
ctgagttgcccaggcggcccttggtctcactgtgtagctcagatgtgcac
tgaacttgtgttctcatgcctctgtctcccacccacatagcgtgatgaca
gacgggcaccaccacacctgacttatgcatcacactgagtgtgatctcca
gctcgtgtacttatccagtggacacagaagcccaagcacttgtgtcgtcc
ccagttctttgattctgtttgcaagatgccctttggagtgcgcatggagg
tcagaagagcgtgtcccaccccctggagctgcagttccagactgccccac
atggatgctggaaactaagccctggtcctctgcaacagcactgtactacc
tatctcaccctgtcccaggtttttccttcttctggttttggtttttgttt
ttttcctgtttttttttttttgttgtttttttttttttaattccaagaca
gggtttcccaatgaggccctgggtgtctctgaactaactctgtagaccag
gctagcctctaactcacagagattgcattccggatcaaagggcgtgcgct
accacagctggcttcagtgtttgctttttttttaaacgttggtgttgatt
ggtggaaattgaagtgttaagaatggttgacaatacagacaccacagatg
tcctgaagaacaaaggtgttcttagaccggaaatggcttggtcattttga
gttaggaagcttgtcatctcctctcttgcctgtactgctgtagcatgttt
gtctaagagtcatgtgtgttatatagaacaaagcatgagtgagttactca
tgtccgagggcttccccagcattggattaccagctttt
gaattcccagatcaggctcctcttgctgtctacactgtaggctgctaaga
gggcatttttattcagcctgcttcatttccccgactacatacataaagaa
agggaattcacacacggtaactgagtgctcacatagaatcaggagtgtgt
tttgggtgtttttcctctctctagacatagggtttctctgtgtagctagt
aacttgatctgaggaccaggctggccttgaacccagagatccgactgcct
cttgcctactaagtgttggtatttatggtatgtgctactaccatccagct
gagtttgttcttgagattggagctcattctgaaacagcctagaatgacct
caaactcagcagacctagactaagctgtaacatatggcaattctcctgcc
tcagtgtgcctgtgccaccatgcctggttaattaaaaacagcaaagggca
gaagctgaaggaggaccagattaaacagaacagacaggaatcggggatgg
ctgaggggcagaatgcatggctgtcatgcacacggctctattttcaagcc
cccgcatcacaagtatacacactacacaggcaaatgtaatggcatacaaa
tgatctctcttttctgttacacaatactgaagtacactgggcataacagc
acaatgtctgccatccccagtatgtatccggtgaggacaggagaaacgga
agttaaaagacatgctcagctacataaaaacttccgagttagcccatgat
aagtaagatcttgtcccccaaacaagcaaatcttcaagggactagagatg
cctcaagcattttaacagcagcacatactgctcttccagataacccaaac
ccaattcccaacaccaatgttggatggcctacaaccatctgttaatgtaa
tttatggtctacgtgggcactcatgagcacgtgcacataccacacatata
tataattaaataaagccaggcagtgttggacatgatgttaacccgaccac
tcaggagatggagcaaaggcagcaaattctgagtttgatgctaactgtct
acgagcttaattctagacagccaaggccacgaacggtgggatgtctcctt
ggcttcatga
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr5_122116059_122117214
seq2: B6Ng01-060E20.b_44_1181

seq1  GAATTCACAGATATGTCTGCATTTGTCTCTCAAGTTTTGGAACTACCATA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCACAGATATGTCTGCATTTGTCTCTCAAGTTTTGGAACTACCATA  50

seq1  CCCAATAAAAACAAAAACAAAAACAAAAAAAACCCTAAATGACCAAATCA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCAATAAAAACAAAAACAAAAACAAAAAAAACCCTAAATGACCAAATCA  100

seq1  GCCATGAGTTTAACCTGGAATCTTCTGATCTATATTTAGAGGCATTACCC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCATGAGTTTAACCTGGAATCTTCTGATCTATATTTAGAGGCATTACCC  150

seq1  ATTGTTCCTCTTGCCTGCACTCCCATAATTTAAAAAGCATTTTTAACGAT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTGTTCCTCTTGCCTGCACTCCCATAATTTAAAAAGCATTTTTAACGAT  200

seq1  TATTTTTTTGGTGAAGATTGGTCCCAGCACCTCACACGTGCTCCTCCGTT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATTTTTTTGGTGAAGATTGGTCCCAGCACCTCACACGTGCTCCTCCGTT  250

seq1  GCCGACACCCCTGGCCCCTTTTTACCTTGTTATATTTTGAGACGGTCTCG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCGACACCCCTGGCCCCTTTTTACCTTGTTATATTTTGAGACGGTCTCG  300

seq1  CTGAGTTGCCCAGGCGGCCCTTGGTCTCACTGTGTAGCTCAGATGTGCAC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGAGTTGCCCAGGCGGCCCTTGGTCTCACTGTGTAGCTCAGATGTGCAC  350

seq1  TGAACTTGTGTTCTCATGCCTCTGTCTCCCACCCACATAGCGTGATGACA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAACTTGTGTTCTCATGCCTCTGTCTCCCACCCACATAGCGTGATGACA  400

seq1  GACGGGCACCACCACACCTGACTTATGCATCACACTGAGTGTGATCTCCA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACGGGCACCACCACACCTGACTTATGCATCACACTGAGTGTGATCTCCA  450

seq1  GCTCGTGTACTTATCCAGTGGACACAGAAGCCCAAGCACTTGTGTCGTCC  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTCGTGTACTTATCCAGTGGACACAGAAGCCCAAGCACTTGTGTCGTCC  500

seq1  CCAGTTCTTTGATTCTGTTTGCAAGATGCCCTTTGGAGTGCGCATGGAGG  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAGTTCTTTGATTCTGTTTGCAAGATGCCCTTTGGAGTGCGCATGGAGG  550

seq1  TCAGAAGAGCGTGTCCCACCCCCTGGAGCTGCAGTTCCAGACTGCCCCAC  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAGAAGAGCGTGTCCCACCCCCTGGAGCTGCAGTTCCAGACTGCCCCAC  600

seq1  ATGGATGCTGGAAACTAAGCCCTGGTCCTCTGCAACAGCACTGTACTACC  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGGATGCTGGAAACTAAGCCCTGGTCCTCTGCAACAGCACTGTACTACC  650

seq1  TATCTCACCCTGTCCCAGGTTTTTCCTTCTTCTGGTTTTGGTTTTTGTTT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATCTCACCCTGTCCCAGGTTTTTCCTTCTTCTGGTTTTGGTTTTTGTTT  700

seq1  TTTTCCTGTTTTTTTTTTTTTGTTGTTTTTTTTTTTTTAATTCCAAGACA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTCCTGTTTTTTTTTTTTTGTTGTTTTTTTTTTTTTAATTCCAAGACA  750

seq1  GGGTTTCCCAATGAGGCCCTGGGTGTCTCTGAACTAACTCTGTAGACCAG  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGTTTCCCAATGAGGCCCTGGGTGTCTCTGAACTAACTCTGTAGACCAG  800

seq1  GCTAGCCTCTAACTCACAGAGATTGCATT-CGGATCAAA-GGCGTGCGCT  848
      ||||||||||||||||||||||||||||| ||||||||| ||||||||||
seq2  GCTAGCCTCTAACTCACAGAGATTGCATTCCGGATCAAAGGGCGTGCGCT  850

seq1  ACCACAGCTGGCTTCAGTGTTTGCTTTTTTTTTTAAACGTTGGTGTTGAT  898
      |||||||||||||||||||||||| |||||||||||||||||||||||||
seq2  ACCACAGCTGGCTTCAGTGTTTGC-TTTTTTTTTAAACGTTGGTGTTGAT  899

seq1  TGGTGGAATATTGAAGTGTTAAGAATGGTTGACAATACAGACACCAACAG  948
      |||||||| |||||||||||||||||||||||||||||||||||| ||||
seq2  TGGTGGAA-ATTGAAGTGTTAAGAATGGTTGACAATACAGACACC-ACAG  947

seq1  ATGTCCTGAAAGAACAGAGGTGTTCTTAGACCGGAAATGGCTTGTGCAGT  998
      |||||||| ||||||| |||||||||||||||||||||||||||  || |
seq2  ATGTCCTG-AAGAACAAAGGTGTTCTTAGACCGGAAATGGCTTGGTCA-T  995

seq1  TTTGAGTTAGGAAGGCTTTGTCATCTCCTCTCTGCCTTGTACTGCTGTAA  1048
      ||||||||||||||   ||||||||||||||||  | ||||||||||| |
seq2  TTTGAGTTAGGAAG--CTTGTCATCTCCTCTCTTGCCTGTACTGCTGT-A  1042

seq1  GCATGTTGGTTCTTAAGAG-CATGTGTGTTTATATAGAAACATAGCATGA  1097
      ||||||| ||   |||||| |||||||| |||||||| |||| |||||||
seq2  GCATGTTTGT--CTAAGAGTCATGTGTG-TTATATAG-AACAAAGCATGA  1088

seq1  GGTGAGTTTTACTCATGTCCCCGAGGGGCTGCCCCAGCTTTGGATTTACT  1147
       |||||  ||||||||||  |||| ||||| ||||||| |||||||    
seq2  -GTGAG--TTACTCATGT--CCGA-GGGCTTCCCCAGCATTGGATT---A  1129

seq1  CAAGCTTTT  1156
      | |||||||
seq2  CCAGCTTTT  1138

seq1: chr5_122218628_122219752
seq2: B6Ng01-060E20.g_66_1175 (reverse)

seq1  TCATAGAAGCCAAGGGAGACATCCCACAACAGTTTCTGTGGCCTTGGCTG  50
      |||| |||||||| |||||||||||   || |||   |||||||||||||
seq2  TCAT-GAAGCCAA-GGAGACATCCC---ACCGTT--CGTGGCCTTGGCTG  43

seq1  TTCTAGAATTAGCTTCGTAGACCAGGTTAGCATCAAACTCAGATTTTGCC  100
       ||||||||||   ||||||||   |||||||||||||||||| |||| |
seq2  -TCTAGAATTAAGCTCGTAGAC--AGTTAGCATCAAACTCAGAATTTG-C  89

seq1  TGCCTTTGCCTCCATCTCCTGAGTGCTCGGGTTAACATCATGTCCCACCA  150
      |||||||| |||||||||||||||| ||||||||||||||||| ||| ||
seq2  TGCCTTTG-CTCCATCTCCTGAGTGGTCGGGTTAACATCATGT-CCAACA  137

seq1  CTGCCTGGCTTTATTTTAAATTATATATATGTGTGGTATGTGCACGTGCT  200
      ||||||||||||||||  ||||||||||||||||||||||||||||||||
seq2  CTGCCTGGCTTTATTT--AATTATATATATGTGTGGTATGTGCACGTGCT  185

seq1  CATGAGTGCCCACGTAGACCATAAGTTACATTAACAGATGGTTGTAGGCC  250
      |||||||||||||||||||||||| |||||||||||||||||||||||||
seq2  CATGAGTGCCCACGTAGACCATAAATTACATTAACAGATGGTTGTAGGCC  235

seq1  ATCCAACATTGGTGTTGGGAATTGGGTTTGGGTTATCTGGAAGAGCAGTA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCCAACATTGGTGTTGGGAATTGGGTTTGGGTTATCTGGAAGAGCAGTA  285

seq1  TGTGCTGCTGTTAAAATGCTTGAGGCATCTCTAGTCCCTTGAAGATTTGC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTGCTGCTGTTAAAATGCTTGAGGCATCTCTAGTCCCTTGAAGATTTGC  335

seq1  TTGTTTGGGGGACAAGATCTTACTTATCATGGGCTAACTCGGAAGTTTTT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGTTTGGGGGACAAGATCTTACTTATCATGGGCTAACTCGGAAGTTTTT  385

seq1  ATGTAGCTGAGCATGTCTTTTAACTTCCGTTTCTCCTGTCCTCACCGGAT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGTAGCTGAGCATGTCTTTTAACTTCCGTTTCTCCTGTCCTCACCGGAT  435

seq1  ACATACTGGGGATGGCAGACATTGTGCTGTTATGCCCAGTGTACTTCAGT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACATACTGGGGATGGCAGACATTGTGCTGTTATGCCCAGTGTACTTCAGT  485

seq1  ATTGTGTAACAGAAAAGAGAGATCATTTGTATGCCATTACATTTGCCTGT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTGTGTAACAGAAAAGAGAGATCATTTGTATGCCATTACATTTGCCTGT  535

seq1  GTAGTGTGTATACTTGTGATGCGGGGGCTTGAAAATAGAGCCGTGTGCAT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTAGTGTGTATACTTGTGATGCGGGGGCTTGAAAATAGAGCCGTGTGCAT  585

seq1  GACAGCCATGCATTCTGCCCCTCAGCCATCCCCGATTCCTGTCTGTTCTG  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACAGCCATGCATTCTGCCCCTCAGCCATCCCCGATTCCTGTCTGTTCTG  635

seq1  TTTAATCTGGTCCTCCTTCAGCTTCTGCCCTTTGCTGTTTTTAATTAACC  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTAATCTGGTCCTCCTTCAGCTTCTGCCCTTTGCTGTTTTTAATTAACC  685

seq1  AGGCATGGTGGCACAGGCACACTGAGGCAGGAGAATTGCCATATGTTACA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGCATGGTGGCACAGGCACACTGAGGCAGGAGAATTGCCATATGTTACA  735

seq1  GCTTAGTCTAGGTCTGCTGAGTTTGAGGTCATTCTAGGCTGTTTCAGAAT  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTTAGTCTAGGTCTGCTGAGTTTGAGGTCATTCTAGGCTGTTTCAGAAT  785

seq1  GAGCTCCAATCTCAAGAACAAACTCAGCTGGATGGTAGTAGCACATACCA  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGCTCCAATCTCAAGAACAAACTCAGCTGGATGGTAGTAGCACATACCA  835

seq1  TAAATACCAACACTTAGTAGGCAAGAGGCAGTCGGATCTCTGGGTTCAAG  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAATACCAACACTTAGTAGGCAAGAGGCAGTCGGATCTCTGGGTTCAAG  885

seq1  GCCAGCCTGGTCCTCAGATCAAGTTACTAGCTACACAGAGAAACCCTATG  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCAGCCTGGTCCTCAGATCAAGTTACTAGCTACACAGAGAAACCCTATG  935

seq1  TCTAGAGAGAGGAAAAACACCCAAAACACACTCCTGATTCTATGTGAGCA  1000
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTAGAGAGAGGAAAAACACCCAAAACACACTCCTGATTCTATGTGAGCA  985

seq1  CTCAGTTACCGTGTGTGAATTCCCTTTCTTTATGTATGTAGTCGGGGAAA  1050
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCAGTTACCGTGTGTGAATTCCCTTTCTTTATGTATGTAGTCGGGGAAA  1035

seq1  TGAAGCAGGCTGAATAAAAATGCCCTCTTAGCAGCCTACAGTGTAGACAG  1100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAAGCAGGCTGAATAAAAATGCCCTCTTAGCAGCCTACAGTGTAGACAG  1085

seq1  CAAGAGGAGCCTGATCTGGGAATTC  1125
      |||||||||||||||||||||||||
seq2  CAAGAGGAGCCTGATCTGGGAATTC  1110