BAC Information

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BAC

Clone NameB6Ng01-060N09
Chromosome5 (Build37)
Map Location 65,924,824 - 66,063,203
singlet/doubletdoublet
Overlap geneHip2, 9030416H16Rik
Upstream geneLOC100042198, Klf3, Tlr1, Tlr6, 9130005N14Rik, Tmem156, Klhl5, Wdr19, Rfc1, Klb, Rpl9, Lias, Ugdh, 1110003E01Rik, 4930589O11Rik
Downstream gene1700022K14Rik, LOC384261, B3bp, LOC100041809, Rhoh, LOC626641, EG666827, Chrna9, 9130230L23Rik, BC013481, LOC626714, LOC666854, LOC100042394, Nsun7, Apbb2
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-060N09.bB6Ng01-060N09.g
ACCDH881698DH881699
length1,1171,102
definitionDH881698|Mus musculus domesticus DNA, BAC clone: B6Ng01-060N09, 5' end.DH881699|Mus musculus domesticus DNA, BAC clone: B6Ng01-060N09, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(65,924,824 - 65,925,961)(66,062,096 - 66,063,203)
sequence
gaattcatgtgtttttatccccttcctgactttttacacaaaggtccaag
gcttgcagtattgcaggaacttgatggcccagggtagtgacccctttcat
tcttttcctttgcaccaagtcctttcattctaattaagactgtgaatcgg
gaccccagccagccaatggggaagagacacaggctctaccaaatgcactt
cctatctcaatgtgttgatgcttctgaggacatcttattggtaaagggta
aagtttgcctttttcagactcttcagtttgaatagtgggctcttttgtcc
acccctgaacttatttctaacactgctaagcctgatgaccctgtcactca
tatggtaaaagtagagaattgactccccaattctttctttgggaataatt
aaaaaaaaattttttttttgagtgaaggacttgatattattggggtcacc
ttctgtggtctgcccttactcctagaacctgggaggcagagacaggtgaa
ctctcttgagttcaaggccagactgcctggtctagagagtgagtttcagg
acagccaaaccaaacacagaaaaaccctttctcaaaaaaccaaaaaaatc
ccctaaaactcaaaactaaaaccaaccaactaaccaaccaaaaaagaggt
gtgtgtttaatgcaagcactcagaaggcagaggcaggagaatcttttttg
aggccagcccgtcggctgttgagctctgggcctgtcaaagctacattgag
actctgtttcaaaaacaaaaagaaaagaaaaacctcaagacagacaagct
atacatttcagcatctatcacgaggagataaggagggcggggagccattt
aaggtgacatcgaaggtcatggagaataagcacccacacagtggcaagcc
ttacagaagagtaagaagcccaaagtgctgggagaaagagcacaggtgtt
aaggagacgcatacttagcagacagaaagagaaagcaatacttggaaagt
ggggaactgagaagcacagctgccactcagctctactgtggcagggtggg
ctctgggacggaaagtcagcatccataagaactagtaatcgctatctcta
ggggctaagtggtccct
gaattccagtcttctttttcagagttatatatacttgtctactagaatct
taataatttttccatcctctcattctttttttttttttttagaaaaaaat
ttttttattggatattttatttatctacatttcaaccatcctctcattca
taatccatttaacaacaaaagaaattaaagagaaaggaagcaaccaatgt
tttcatttcttgtacaagcacaaagactttaaataatgattacaaataaa
tgattacaaaagactttacaaataggacaaatgatagaacatcgtcaagg
acaaaactgttgactcccaggacttgggaaaccgaggtaagaggaggtcc
ttgagtttgaggtcagcatgagctatacatagtgagttccaggccagcca
gggctttatagtgagatcttgtcacagaaaaggaggttggggtcaggagg
aaactgtgcaagccagtaagcagcattcttcttgttcttgctttagtttc
tgtcctgactcccttacccatggactatgacttggaagtgtaagctaaac
ccttccctccaagttggtgtggtgagtgtgtcctgatagcaacagagaag
caaatgaatggcctagtagcaccactctgggaaacgtttttttaaaaaaa
acacatgagcacttggaagaaaatattcaaaatcctcattgtattctgcc
acagattaccagagcgtttcttttgcttttttgtttgtttatttgttttg
ttttttgtttttcgatcttttgctcacttttaaaacacagaaaaccttgt
tgtctggctgggaattcactacatagatcaggctatccttcaacttatag
tggacatcttctaatcccaggtgttgaaattacagatgcaggcctatata
tttttcttaaaagtcattttcagtttagtgcactgctccttcagtttgac
tatttctgagtaaatcttgtaaatatacatatgtttattcttctagcaaa
ttattgacctgaaggagttgttagcaagcctagatttgtagctggtttta
tacagagtctgtggttctcaaagacttttgctggcatatgaagggctaag
gg
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr5_65924824_65925961
seq2: B6Ng01-060N09.b_46_1162

seq1  GAATTCATGTGTTTTTATCCCCTTCCTGACTTTTTACACAAAGGTCCAAG  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCATGTGTTTTTATCCCCTTCCTGACTTTTTACACAAAGGTCCAAG  50

seq1  GCTTGCAGTATTGCAGGAACTTGATGGCCCAGGGTAGTGACCCCTTTCAT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTTGCAGTATTGCAGGAACTTGATGGCCCAGGGTAGTGACCCCTTTCAT  100

seq1  TCTTTTCCTTTGCACCAAGTCCTTTCATTCTAATTAAGACTGTGAATCGG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTTTTCCTTTGCACCAAGTCCTTTCATTCTAATTAAGACTGTGAATCGG  150

seq1  GACCCCAGCCAGCCAATGGGGAAGAGACACAGGCTCTACCAAATGCACTT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACCCCAGCCAGCCAATGGGGAAGAGACACAGGCTCTACCAAATGCACTT  200

seq1  CCTATCTCAATGTGTTGATGCTTCTGAGGACATCTTATTGGTAAAGGGTA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTATCTCAATGTGTTGATGCTTCTGAGGACATCTTATTGGTAAAGGGTA  250

seq1  AAGTTTGCCTTTTTCAGACTCTTCAGTTTGAATAGTGGGCTCTTTTGTCC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGTTTGCCTTTTTCAGACTCTTCAGTTTGAATAGTGGGCTCTTTTGTCC  300

seq1  ACCCCTGAACTTATTTCTAACACTGCTAAGCCTGATGACCCTGTCACTCA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCCCTGAACTTATTTCTAACACTGCTAAGCCTGATGACCCTGTCACTCA  350

seq1  TATGGTAAAAGTAGAGAATTGACTCCCCAATTCTTTCTTTGGGAATAATT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATGGTAAAAGTAGAGAATTGACTCCCCAATTCTTTCTTTGGGAATAATT  400

seq1  AAAAAAAAATTTTTTTTTTGAGTGAAGGACTTGATATTATTGGGGTCACC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAAAAAAATTTTTTTTTTGAGTGAAGGACTTGATATTATTGGGGTCACC  450

seq1  TTCTGTGGTCTGCCCTTACTCCTAGAACCTGGGAGGCAGAGACAGGTGAA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTGTGGTCTGCCCTTACTCCTAGAACCTGGGAGGCAGAGACAGGTGAA  500

seq1  CTCTCTTGAGTTCAAGGCCAGACTGCCTGGTCTAGAGAGTGAGTTTCAGG  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCTCTTGAGTTCAAGGCCAGACTGCCTGGTCTAGAGAGTGAGTTTCAGG  550

seq1  ACAGCCAAACCAAACACAGAAAAACCCTTTCTCAAAAAACCAAAAAAATC  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAGCCAAACCAAACACAGAAAAACCCTTTCTCAAAAAACCAAAAAAATC  600

seq1  CCCTAAAACTCAAAACTAAAACCAACCAACTAACCAACCAAAAAAGAGGT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCTAAAACTCAAAACTAAAACCAACCAACTAACCAACCAAAAAAGAGGT  650

seq1  GTGTGTTTAATGCAAGCACTCAGAAGGCAGAGGCAGGAGAATCTTTTTTG  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGTGTTTAATGCAAGCACTCAGAAGGCAGAGGCAGGAGAATCTTTTTTG  700

seq1  AGGCCAGCCCGTCGGCTGTTGAGCTCTGGGCCTGTCAAAGCTACATTGAG  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGCCAGCCCGTCGGCTGTTGAGCTCTGGGCCTGTCAAAGCTACATTGAG  750

seq1  ACTCTGTTTCAAAAACAAAAAGAAAAGAAAAACCTCAAGACAGACAAGCT  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTCTGTTTCAAAAACAAAAAGAAAAGAAAAACCTCAAGACAGACAAGCT  800

seq1  ATACATTTCAGCATCTATCAGGAGGAGATAAGGAGGGCGGGGAGCCATTT  850
      |||||||||||||||||||| |||||||||||||||||||||||||||||
seq2  ATACATTTCAGCATCTATCACGAGGAGATAAGGAGGGCGGGGAGCCATTT  850

seq1  AAGGTGACATCG-AGGTCATGGAGAATAAGCACCCACACAGTGGCAAGCC  899
      |||||||||||| |||||||||||||||||||||||||||||||||||||
seq2  AAGGTGACATCGAAGGTCATGGAGAATAAGCACCCACACAGTGGCAAGCC  900

seq1  TTACAGAAAGAGTAAGGAAGCCCAAAGTGCTGGGAGAAAGAGCACAGGTG  949
      |||||| |||||||| ||||||||||||||||||||||||||||||||||
seq2  TTACAG-AAGAGTAA-GAAGCCCAAAGTGCTGGGAGAAAGAGCACAGGTG  948

seq1  TTAAGGAGACGCATACTTAGCAGACAGAAAGAAGAAAAGCAATACTTGGA  999
      ||||||||||||||||||||||||||||||||   |||||||||||||| 
seq2  TTAAGGAGACGCATACTTAGCAGACAGAAAGA--GAAAGCAATACTTGG-  995

seq1  AAAGTGGGGAAACTGAGAAGCACAGCTGCCACTCAGCTCCTACTGTGCAA  1049
      ||||||||| |||||||||||||||||||||||||||| ||||||||  |
seq2  AAAGTGGGG-AACTGAGAAGCACAGCTGCCACTCAGCT-CTACTGTGGCA  1043

seq1  GGGGTGGGGCTTCTGGGACGGAAAAGTACAGCATCTCATTAGAGAACTAA  1099
       |||||||   |||||||||| ||||| ||||||| |||   ||||||| 
seq2  -GGGTGGG--CTCTGGGACGG-AAAGT-CAGCATC-CAT--AAGAACTAG  1085

seq1  TTATTCCGCCTATCTCTAGTGGGGCTTAAGGTGGTCCCT  1138
      | ||  || |||||||||  ||||||  | |||||||||
seq2  TAAT--CG-CTATCTCTA--GGGGCT--AAGTGGTCCCT  1117

seq1: chr5_66062096_66063203
seq2: B6Ng01-060N09.g_67_1168 (reverse)

seq1  CCCTTAGCCACTTCATATGCCAGCCAAAAGTCTTGTGAGAA-CACAGGAC  49
      ||||||||| ||||||||||||| |||||||||| |||||| |||| |||
seq2  CCCTTAGCC-CTTCATATGCCAG-CAAAAGTCTT-TGAGAACCACA-GAC  46

seq1  TTCTG-ATAAAA-CAGCTACAAATCTAGGCTTTGCT-ACAACTCCTTCAG  96
       |||| |||||| ||||||||||||||||| ||||| |||||||||||||
seq2  -TCTGTATAAAACCAGCTACAAATCTAGGC-TTGCTAACAACTCCTTCAG  94

seq1  GTTCAATAATTTGCTAGAAGAATAAACAATATGTATATTTACAAGATATA  146
      | ||||||||||||||||||||||||| ||||||||||||||||||| | 
seq2  G-TCAATAATTTGCTAGAAGAATAAAC-ATATGTATATTTACAAGAT-TT  141

seq1  ACTCAGAAATAGTCAAACTGAAGGGGCAGTGCACTTAAAACTGAAAATGA  196
      |||||||||||||||||||||||| ||||||||||  |||||||||||||
seq2  ACTCAGAAATAGTCAAACTGAAGGAGCAGTGCACT--AAACTGAAAATGA  189

seq1  CTTTTAAG-AAAATATATAGGCCTGCATCTGTAATTTCAACACCTGGGAT  245
      |||||||| |||||||||||||||||||||||||||||||||||||||||
seq2  CTTTTAAGAAAAATATATAGGCCTGCATCTGTAATTTCAACACCTGGGAT  239

seq1  TAGAAGATGTCCACTATAAGTTGAAGGATAGCCTGATCTATGTAGTGAAT  295
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGAAGATGTCCACTATAAGTTGAAGGATAGCCTGATCTATGTAGTGAAT  289

seq1  TCCCAGCCAGACAACAAGGTTTTCTGTGTTTTAAAAGTGAGCAAAAGATC  345
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCCAGCCAGACAACAAGGTTTTCTGTGTTTTAAAAGTGAGCAAAAGATC  339

seq1  GAAAAACAAAAAACAAAACAAATAAACAAACAAAAAAGCAAAAGAAACGC  395
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAAAACAAAAAACAAAACAAATAAACAAACAAAAAAGCAAAAGAAACGC  389

seq1  TCTGGTAATCTGTGGCAGAATACAATGAGGATTTTGAATATTTTCTTCCA  445
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTGGTAATCTGTGGCAGAATACAATGAGGATTTTGAATATTTTCTTCCA  439

seq1  AGTGCTCATGTGTTTTTTTTAAAAAAACGTTTCCCAGAGTGGTGCTACTA  495
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTGCTCATGTGTTTTTTTTAAAAAAACGTTTCCCAGAGTGGTGCTACTA  489

seq1  GGCCATTCATTTGCTTCTCTGTTGCTATCAGGACACACTCACCACACCAA  545
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCCATTCATTTGCTTCTCTGTTGCTATCAGGACACACTCACCACACCAA  539

seq1  CTTGGAGGGAAGGGTTTAGCTTACACTTCCAAGTCATAGTCCATGGGTAA  595
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTGGAGGGAAGGGTTTAGCTTACACTTCCAAGTCATAGTCCATGGGTAA  589

seq1  GGGAGTCAGGACAGAAACTAAAGCAAGAACAAGAAGAATGCTGCTTACTG  645
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGAGTCAGGACAGAAACTAAAGCAAGAACAAGAAGAATGCTGCTTACTG  639

seq1  GCTTGCACAGTTTCCTCCTGACCCCAACCTCCTTTTCTGTGACAAGATCT  695
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTTGCACAGTTTCCTCCTGACCCCAACCTCCTTTTCTGTGACAAGATCT  689

seq1  CACTATAAAGCCCTGGCTGGCCTGGAACTCACTATGTATAGCTCATGCTG  745
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACTATAAAGCCCTGGCTGGCCTGGAACTCACTATGTATAGCTCATGCTG  739

seq1  ACCTCAAACTCAAGGACCTCCTCTTACCTCGGTTTCCCAAGTCCTGGGAG  795
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCTCAAACTCAAGGACCTCCTCTTACCTCGGTTTCCCAAGTCCTGGGAG  789

seq1  TCAACAGTTTTGTCCTTGACGATGTTCTATCATTTGTCCTATTTGTAAAG  845
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAACAGTTTTGTCCTTGACGATGTTCTATCATTTGTCCTATTTGTAAAG  839

seq1  TCTTTTGTAATCATTTATTTGTAATCATTATTTAAAGTCTTTGTGCTTGT  895
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTTTTGTAATCATTTATTTGTAATCATTATTTAAAGTCTTTGTGCTTGT  889

seq1  ACAAGAAATGAAAACATTGGTTGCTTCCTTTCTCTTTAATTTCTTTTGTT  945
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAAGAAATGAAAACATTGGTTGCTTCCTTTCTCTTTAATTTCTTTTGTT  939

seq1  GTTAAATGGATTATGAATGAGAGGATGGTTGAAATGTAGATAAATAAAAT  995
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTAAATGGATTATGAATGAGAGGATGGTTGAAATGTAGATAAATAAAAT  989

seq1  ATCCAATAAAAAAATTTTTTTCTAAAAAAAAAAAAAAAGAATGAGAGGAT  1045
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCCAATAAAAAAATTTTTTTCTAAAAAAAAAAAAAAAGAATGAGAGGAT  1039

seq1  GGAAAAATTATTAAGATTCTAGTAGACAAGTATATATAACTCTGAAAAAG  1095
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAAAAATTATTAAGATTCTAGTAGACAAGTATATATAACTCTGAAAAAG  1089

seq1  AAGACTGGAATTC  1108
      |||||||||||||
seq2  AAGACTGGAATTC  1102