BAC Information

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BAC

Clone NameB6Ng01-061C15
Chromosome5 (Build37)
Map Location 67,418,161 - 67,607,529
singlet/doubletdoublet
Overlap gene3732412D22Rik, Phox2b
Upstream geneBC013481, LOC626714, LOC666854, LOC100042394, Nsun7, Apbb2, Uchl1, LOC100041876, LOC624662
Downstream geneTmem33, Slc30a9, EG666938, C330024D21Rik, D830007B15Rik, Atp8a1, LOC100042458, EG330097, EG666977, AY616753
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-061C15.bB6Ng01-061C15.g
ACCDH881917DH881918
length1,157194
definitionDH881917|Mus musculus domesticus DNA, BAC clone: B6Ng01-061C15, 5' end.DH881918|Mus musculus domesticus DNA, BAC clone: B6Ng01-061C15, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(67,418,161 - 67,419,324)(67,607,336 - 67,607,529)
sequence
gaattcacctgtgcttgtgtttgttctcccccctgctcataaccttctct
acgaattctgcttgttctcagtcttgggtttgagtatttactgtgctggc
ctccaggctggggctccactcatcttgctttgaggtgatattagcccact
ttagggaaagctgccacgggaagcgatagtggatgcagcgggtactggct
ctgagatgctgcatttgtcctggcattcgccggaatgagcatgcaccctg
ggcatcttgctcaggagcacggatgcttctaagacatccttctgggagac
acggagccaagccttctctttcctgtggctaagcaccacatgtttccatg
gcccataggaggcacagaggcgtagaactgagtcaaagtaaaagcgttag
gtttgggaaatggtttctgccaccaaagaggacatttaaatgatgaagat
ttgtttctctgtcccttgggtgccatattgaggctgtcttctttcaccct
ggccagcccttgaggacctgcctcagttagttctgatcgtggggttgctt
tgtttttcctgaacagtttaagttctgggcatgggacccagaagaggagc
gccggcgacaggagaaatggcagcaggagcaggaacgtctgctgcaggta
ggactgacctgctgagctagctccctgtgctctggaactgaaccctcata
atgtctgtcgccttgaatagattttaacccaggaaacatggaatccagtt
cttctcagaaactcatgcatctgtcaaggctttgtgtgcaggcagcggag
tcttgggcctgattcttcttgccgtgggggagggaatcatgtctcattag
tgcttaagaacttgtctccgagcagtggttaagggttcagtctacctgca
tgcataactcctcagccaccagtcccagttcagaagcaacaaggatgaat
taccccgaagctattgatagcggttgggtagaatagaagttgacatcagt
tctaattcctcaatagaattatcgtcccattttttcctcatgtgaaagtt
gataatgatcaattctatgaaatggaatctaaaagaaatggaacctgctc
ctattgctctattccaagtgactcatgtacttcgaacctgtctatctgta
ccctcgg
gtccctgaatggggggtgggggggcagcagcggccacaacgtcaacagtg
cctcctttatgcgtttggccatttctgcttctcattcctgggctgttgca
ccttgtcgccttacaggcagagtgtggagcaggaggggcatgggcaggca
agtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtg
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr5_67418161_67419324
seq2: B6Ng01-061C15.b_43_1199

seq1  GAATTCACCTGTGCTTGTGTTTGTTCTCAGCCCTGCTCATAACCTTCTCT  50
      ||||||||||||||||||||||||||||  ||||||||||||||||||||
seq2  GAATTCACCTGTGCTTGTGTTTGTTCTCCCCCCTGCTCATAACCTTCTCT  50

seq1  ACGAATTCTGCTTGTTCTCAGTCTTGGGTTTGAGTATTTACTGTGCTGGC  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACGAATTCTGCTTGTTCTCAGTCTTGGGTTTGAGTATTTACTGTGCTGGC  100

seq1  CTCCAGGCTGGGGCTCCACTCATCTTGCTTTGAGGTGATATTAGCCCACT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCCAGGCTGGGGCTCCACTCATCTTGCTTTGAGGTGATATTAGCCCACT  150

seq1  TTAGGGAAAGCTGCCACGGGAAGCGATAGTGGATGCAGCGGGTACTGGCT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAGGGAAAGCTGCCACGGGAAGCGATAGTGGATGCAGCGGGTACTGGCT  200

seq1  CTGAGATGCTGCATTTGTCCTGGCATTCGCCGGAATGAGCATGCACCCTG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGAGATGCTGCATTTGTCCTGGCATTCGCCGGAATGAGCATGCACCCTG  250

seq1  GGCATCTTGCTCAGGAGCACGGATGCTTCTAAGACATCCTTCTGGGAGAC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCATCTTGCTCAGGAGCACGGATGCTTCTAAGACATCCTTCTGGGAGAC  300

seq1  ACGGAGCCAAGCCTTCTCTTTCCTGTGGCTAAGCACCACATGTTTCCATG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACGGAGCCAAGCCTTCTCTTTCCTGTGGCTAAGCACCACATGTTTCCATG  350

seq1  GCCCATAGGAGGCACAGAGGCGTAGAACTGAGTCAAAGTAAAAGCGTTAG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCCATAGGAGGCACAGAGGCGTAGAACTGAGTCAAAGTAAAAGCGTTAG  400

seq1  GTTTGGGAAATGGTTTCTGCCACCAAAGAGGACATTTAAATGATGAAGAT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTTGGGAAATGGTTTCTGCCACCAAAGAGGACATTTAAATGATGAAGAT  450

seq1  TTGTTTCTCTGTCCCTTGGGTGCCATATTGAGGCTGTCTTCTTTCACCCT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGTTTCTCTGTCCCTTGGGTGCCATATTGAGGCTGTCTTCTTTCACCCT  500

seq1  GGCCAGCCCTTGAGGACCTGCCTCAGTTAGTTCTGATCGTGGGGTTGCTT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCCAGCCCTTGAGGACCTGCCTCAGTTAGTTCTGATCGTGGGGTTGCTT  550

seq1  TGTTTTTCCTGAACAGTTTAAGTTCTGGGCATGGGACCCAGAAGAGGAGC  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTTTTTCCTGAACAGTTTAAGTTCTGGGCATGGGACCCAGAAGAGGAGC  600

seq1  GCCGGCGACAGGAGAAATGGCAGCAGGAGCAGGAACGTCTGCTGCAGGTA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCGGCGACAGGAGAAATGGCAGCAGGAGCAGGAACGTCTGCTGCAGGTA  650

seq1  GGACTGACCTGCTGAGCTAGCTCCCTGTGCTCTGGAACTGAACCCTCATA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGACTGACCTGCTGAGCTAGCTCCCTGTGCTCTGGAACTGAACCCTCATA  700

seq1  ATGTCTGTCGCCTTGAATAGATTTTAACCCAGGAAACATGGAATCCAGTT  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGTCTGTCGCCTTGAATAGATTTTAACCCAGGAAACATGGAATCCAGTT  750

seq1  CTTCTCAGAAACTCATGCATCTGTCAAGGCTTTGTGTGCAGGCAGCGGAG  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTCTCAGAAACTCATGCATCTGTCAAGGCTTTGTGTGCAGGCAGCGGAG  800

seq1  TCTTGGGCCTGATTCTTCCTGCCGTGGGGGAGGGAATCATGTC-CATTAG  849
      |||||||||||||||||| |||||||||||||||||||||||| ||||||
seq2  TCTTGGGCCTGATTCTTCTTGCCGTGGGGGAGGGAATCATGTCTCATTAG  850

seq1  TGCTTTAAGAACTTGTCTCCGAGCAGTGGTTAAGGG-TCAGTCCACCTGC  898
      ||| |||||||||||||||||||||||||||||||| |||||| ||||||
seq2  TGC-TTAAGAACTTGTCTCCGAGCAGTGGTTAAGGGTTCAGTCTACCTGC  899

seq1  ATGCATAACTCCTCAGCCACCAAGTCCCAGTTCAAGAAGCAACAAGGATG  948
      ||||||||||||||||||||| ||||||||||| ||||||||||||||||
seq2  ATGCATAACTCCTCAGCCACC-AGTCCCAGTTC-AGAAGCAACAAGGATG  947

seq1  AATTACCCCGAAGCTATTTGATAGCGTTTGGGTAGAATAGAATTTGACAT  998
      |||||||||||||||| ||||||||| ||||||||||||||| |||||||
seq2  AATTACCCCGAAGCTA-TTGATAGCGGTTGGGTAGAATAGAAGTTGACAT  996

seq1  CAG-TCTAATTCCTCCAATAGAATTATCGTCCCATTTTTTCCCCA-GTGA  1046
      ||| |||||||||| ||||||||||||||||||||||||||| || ||||
seq2  CAGTTCTAATTCCT-CAATAGAATTATCGTCCCATTTTTTCCTCATGTGA  1045

seq1  AAGCTGATAATGATCAATTCTA-GAAATAGAATTCTGAGAAGAAATGCAA  1095
      ||| |||||||||||||||||| ||||| ||| ||| | |||||||| ||
seq2  AAGTTGATAATGATCAATTCTATGAAATGGAA-TCT-AAAAGAAATGGAA  1093

seq1  CATGCTCCCATTTGCCCCATATCCAAAGTGACCCAGTGACCTTCGAAACT  1145
      | |||||| | |||| |  ||| | ||||||| || ||  ||||||| ||
seq2  CCTGCTCCTA-TTGCTC--TATTCCAAGTGACTCA-TGTACTTCGAACCT  1139

seq1  GGCCTACCTGTACCCTCGG  1164
       | ||| ||||||||||||
seq2  -GTCTATCTGTACCCTCGG  1157

seq1: chr5_67607336_67607529
seq2: B6Ng01-061C15.g_75_268 (reverse)

seq1  CACACACACACACACACACACACACACACACACACACACACACTTGCCTG  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACACACACACACACACACACACACACACACACACACACACACTTGCCTG  50

seq1  CCCATGCCCCTCCTGCTCCACACTCTGCCTGTAAGGCGACAAGGTGCAAC  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCATGCCCCTCCTGCTCCACACTCTGCCTGTAAGGCGACAAGGTGCAAC  100

seq1  AGCCCAGGAATGAGAAGCAGAAATGGCCAAACGCATAAAGGAGGCACTGT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCCCAGGAATGAGAAGCAGAAATGGCCAAACGCATAAAGGAGGCACTGT  150

seq1  TGACGTTGTGGCCGCTGCTGCCCCCCCACCCCCCATTCAGGGAC  194
      ||||||||||||||||||||||||||||||||||||||||||||
seq2  TGACGTTGTGGCCGCTGCTGCCCCCCCACCCCCCATTCAGGGAC  194