BAC Information

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BAC

Clone NameB6Ng01-061D10
Chromosome5 (Build37)
Map Location 31,328,981 - 31,460,645
singlet/doubletdoublet
Overlap geneSlc5a6, 0610007C21Rik, Cad, Slc30a3, Dnajc5g, Trim54, Ucn, Mpv17, Gtf3c2
Upstream geneLOC100039369, Il6, Tyms, EG242914, Gm444, Hadha, Hadhb, Gpr113, EG384325, D5Wsu178e, Gm1060, Otof, 1700001C02Rik, 1700041E20Rik, Kcnk3, 4930471M23Rik, Cenpa, Dpysl5, Mapre3, 1110039B18Rik, 9430057O19Rik, 2310016E02Rik, Emilin1, Khk, Cgref1, Abhd1, Preb, Tcf23
Downstream geneEif2b4, Snx17, Zfp513, Ppm1g, ENSMUSG00000055424, Nrbp1, Krtcap3, Ift172, Fndc4, Gckr, Zfp512, 4930548H24Rik, Xab1, Supt7l, Slc4a1ap, Mrpl33, Rbks, LOC100040000, Bre, Fosl2
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-061D10.bB6Ng01-061D10.g
ACCDH881955DH881956
length4021,050
definitionDH881955|Mus musculus domesticus DNA, BAC clone: B6Ng01-061D10, 5' end.DH881956|Mus musculus domesticus DNA, BAC clone: B6Ng01-061D10, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(31,328,981 - 31,329,388)(31,459,589 - 31,460,645)
sequence
aataaacaagtcctgtttgagatcagtgtcttggtggtttgtgcttgact
cccagaaccaacacaagtaataagcaaaagaatgtcaggtgataaatatt
tcttatggccagtcattaataagcaaaagaatgtcaggtgataaatattt
cttatggccagtcattattcaggggtggggtggggtgtggcaggaatgtg
ggctttagttgtaggatgctaattactgtgggttttgataccatttaacc
aaaatgaaatcacttttgatttgtcttactttgtgttttgttttgttttg
ttttgttttgttttgctttgctttatttctctgtgtcgtcttcatactat
agactagtctcgccttggagtcaggaatttgcttgcctctgcctccggag
tt
gaattccacttctgtttcccagagttccttccacaatctgcttcgtagag
aaccaatgcttcgcatgcaggaaggagagggacattctcagctttgcctg
gacaggctgcaacttgaagctattcacaaggtgagaaccttgtcttttat
ctctcccaccctctacaatcagtgaaataaaatgtttaaaggcagctgca
atggctggagggaaagcagccttgactctctcctgggtcatggtatatag
atctcattcattgactgtctcacatggtctagtcctcctgattgtggctt
tatttggttggttcgttttgggtggttttgatacagggtcagtagctgtt
ggggagctcatcttgtagactaggttggtgtcagactcacaagagatccg
cctgcttctgccttctgattgctgagatgaaaggtgtggtgatgtgtttt
taaagctcatgcaggtgcactctgaggctctgtgggttttctgctctctc
cacaggtacgcttcagcccaaacctggactcctatggatggctggtatct
ggggggcagtcagggttggttcggatccattttgttcgtggactcacctc
tccgctggcccaccgtgtacagcttgaaagccgagccaacttcaatgcta
tgttccaaccgtcctttccaactgaagggcctggtttctctccaagcagc
cattgccttctccccaatccctagtctgggccacacagaactcttggatt
gaagtctgccaagaacaaatggcgcccatgcatagagcatagcacctggg
cccttcctggacagtgatgggtgccaggccttaatctttaggtctacatg
ctccaaacttcttaaatcctcttctttccacagacttctatggtcacagc
tctctgcaggtagggggctcctcctccacacaatttctatgtcttaaatc
atggctcacagaacactcagtcaaacctaggcttgggagtcaaattgcca
tattgagtcatttgtgaggaagtaaaagttagtaaggtactgggtgtttt

quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr5_31328981_31329388
seq2: B6Ng01-061D10.b_46_453

seq1  GAATTCAATAAACAAGTCCTGTTTGAGATCAGTGTCTTGGTGGTTTGTGC  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCAATAAACAAGTCCTGTTTGAGATCAGTGTCTTGGTGGTTTGTGC  50

seq1  TTGACTCCCAGAACCAACACAAGTAATAAGCAAAAGAATGTCAGGTGATA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGACTCCCAGAACCAACACAAGTAATAAGCAAAAGAATGTCAGGTGATA  100

seq1  AATATTTCTTATGGCCAGTCATTAATAAGCAAAAGAATGTCAGGTGATAA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATATTTCTTATGGCCAGTCATTAATAAGCAAAAGAATGTCAGGTGATAA  150

seq1  ATATTTCTTATGGCCAGTCATTATTCAGGGGTGGGGTGGGGTGTGGCAGG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATATTTCTTATGGCCAGTCATTATTCAGGGGTGGGGTGGGGTGTGGCAGG  200

seq1  AATGTGGGCTTTAGTTGTAGGATGCTAATTACTGTGGGTTTTGATACCAT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATGTGGGCTTTAGTTGTAGGATGCTAATTACTGTGGGTTTTGATACCAT  250

seq1  TTAACCAAAATGAAATCACTTTTGATTTGTCTTACTTTGTGTTTTGTTTT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAACCAAAATGAAATCACTTTTGATTTGTCTTACTTTGTGTTTTGTTTT  300

seq1  GTTTTGTTTTGTTTTGTTTTGCTTTGCTTTATTTCTCTGTGTCGTCCTCA  350
      |||||||||||||||||||||||||||||||||||||||||||||| |||
seq2  GTTTTGTTTTGTTTTGTTTTGCTTTGCTTTATTTCTCTGTGTCGTCTTCA  350

seq1  AACTATAGACCAGGCTCGCCTTGGAGTCAGGAATTTGCCTGCCTCTGCCT  400
       ||||||||| || |||||||||||||||||||||||| |||||||||||
seq2  TACTATAGACTAGTCTCGCCTTGGAGTCAGGAATTTGCTTGCCTCTGCCT  400

seq1  CCGGAGTT  408
      ||||||||
seq2  CCGGAGTT  408

seq1: chr5_31459589_31460645
seq2: B6Ng01-061D10.g_68_1117 (reverse)

seq1  AAAACACCCAGTACCTTTACTTAGCTTTACCTCCTTCACAATATG-CTCA  49
      ||||||||||||||| ||||| |  ||||| ||| |||||| ||| ||||
seq2  AAAACACCCAGTACC-TTACTAACTTTTACTTCC-TCACAA-ATGACTCA  47

seq1  ATATGAGCAATTTGACTCCCAAGCCTAGGTTTGGCCTGAGTGTTTCTTGT  99
      ||||| |||||||||||||||||||||||||| | |||||||||   |||
seq2  ATATG-GCAATTTGACTCCCAAGCCTAGGTTT-GACTGAGTGTT--CTGT  93

seq1  GAGCCATGGTTTTAGGCATAGGAATTGTTGTGGAGGGGGAGCCCCCCTAC  149
      |||||||| ||| || ||||| ||||| |||||||| |||| ||||||||
seq2  GAGCCATGATTTAAGACATAGAAATTG-TGTGGAGGAGGAG-CCCCCTAC  141

seq1  CTGCAGGGAGCTGTGACCATAGAAGTCTGTGGAAGGAGAGGGATTTAAGG  199
      |||||| ||||||||||||||||||||||||||| ||   ||||||||| 
seq2  CTGCAGAGAGCTGTGACCATAGAAGTCTGTGGAAAGAAGAGGATTTAAGA  191

seq1  AGTTTGGGGCATGTAGGCCTAAAGATTTAGGCCTGGCA-CCATCACTGTC  248
      ||||||| |||||||| |||||||||| |||||||||| |||||||||||
seq2  AGTTTGGAGCATGTAGACCTAAAGATTAAGGCCTGGCACCCATCACTGTC  241

seq1  CAGGAAGGGCCCAGGTGCTATGCTCTATGCATGGGCGCCATTTGTTCTTG  298
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGGAAGGGCCCAGGTGCTATGCTCTATGCATGGGCGCCATTTGTTCTTG  291

seq1  GCAGACTTCAATCCAAGAGTTCTGTGTGGCCCAGACTAGGGATTGGGGAG  348
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCAGACTTCAATCCAAGAGTTCTGTGTGGCCCAGACTAGGGATTGGGGAG  341

seq1  AAGGCAATGGCTGCTTGGAGAGAAACCAGGCCCTTCAGTTGGAAAGGACG  398
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGGCAATGGCTGCTTGGAGAGAAACCAGGCCCTTCAGTTGGAAAGGACG  391

seq1  GTTGGAACATAGCATTGAAGTTGGCTCGGCTTTCAAGCTGTACACGGTGG  448
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTGGAACATAGCATTGAAGTTGGCTCGGCTTTCAAGCTGTACACGGTGG  441

seq1  GCCAGCGGAGAGGTGAGTCCACGAACAAAATGGATCCGAACCAACCCTGA  498
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCAGCGGAGAGGTGAGTCCACGAACAAAATGGATCCGAACCAACCCTGA  491

seq1  CTGCCCCCCAGATACCAGCCATCCATAGGAGTCCAGGTTTGGGCTGAAGC  548
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGCCCCCCAGATACCAGCCATCCATAGGAGTCCAGGTTTGGGCTGAAGC  541

seq1  GTACCTGTGGAGAGAGCAGAAAACCCACAGAGCCTCAGAGTGCACCTGCA  598
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTACCTGTGGAGAGAGCAGAAAACCCACAGAGCCTCAGAGTGCACCTGCA  591

seq1  TGAGCTTTAAAAACACATCACCACACCTTTCATCTCAGCAATCAGAAGGC  648
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAGCTTTAAAAACACATCACCACACCTTTCATCTCAGCAATCAGAAGGC  641

seq1  AGAAGCAGGCGGATCTCTTGTGAGTCTGACACCAACCTAGTCTACAAGAT  698
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAAGCAGGCGGATCTCTTGTGAGTCTGACACCAACCTAGTCTACAAGAT  691

seq1  GAGCTCCCCAACAGCTACTGACCCTGTATCAAAACCACCCAAAACGAACC  748
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGCTCCCCAACAGCTACTGACCCTGTATCAAAACCACCCAAAACGAACC  741

seq1  AACCAAATAAAGCCACAATCAGGAGGACTAGACCATGTGAGACAGTCAAT  798
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACCAAATAAAGCCACAATCAGGAGGACTAGACCATGTGAGACAGTCAAT  791

seq1  GAATGAGATCTATATACCATGACCCAGGAGAGAGTCAAGGCTGCTTTCCC  848
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATGAGATCTATATACCATGACCCAGGAGAGAGTCAAGGCTGCTTTCCC  841

seq1  TCCAGCCATTGCAGCTGCCTTTAAACATTTTATTTCACTGATTGTAGAGG  898
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCAGCCATTGCAGCTGCCTTTAAACATTTTATTTCACTGATTGTAGAGG  891

seq1  GTGGGAGAGATAAAAGACAAGGTTCTCACCTTGTGAATAGCTTCAAGTTG  948
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGGGAGAGATAAAAGACAAGGTTCTCACCTTGTGAATAGCTTCAAGTTG  941

seq1  CAGCCTGTCCAGGCAAAGCTGAGAATGTCCCTCTCCTTCCTGCATGCGAA  998
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGCCTGTCCAGGCAAAGCTGAGAATGTCCCTCTCCTTCCTGCATGCGAA  991

seq1  GCATTGGTTCTCTACGAAGCAGATTGTGGAAGGAACTCTGGGAAACAGAA  1048
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCATTGGTTCTCTACGAAGCAGATTGTGGAAGGAACTCTGGGAAACAGAA  1041

seq1  GTGGAATTC  1057
      |||||||||
seq2  GTGGAATTC  1050