BAC Information

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BAC

Clone NameB6Ng01-061F04
Chromosome5 (Build37)
Map Location 51,548,249 - 51,759,573
singlet/doubletdoublet
Overlap genenone
Upstream geneEG637307, LOC100041015, LOC242987, EG624734, LOC666265, LOC100041059
Downstream genePpargc1a, Dhx15, Sod3
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-061F04.bB6Ng01-061F04.g
ACCDH882033DH882034
length1,079525
definitionDH882033|Mus musculus domesticus DNA, BAC clone: B6Ng01-061F04, 5' end.DH882034|Mus musculus domesticus DNA, BAC clone: B6Ng01-061F04, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(51,548,249 - 51,549,333)(51,759,043 - 51,759,573)
sequence
gaattctttcaacaggctagatttttggcaatattttccacgagtcatta
aataaccattgagtacctggaatgttgacctcgttacacccagttgtgaa
caaagcattctggaagcttccttcaagggaactagaagtgatgccatttt
ctactcccaactaaggctgtgctgggcttgtctgtgcttccttgatcttc
catgtgtttcatacaacgtttttagagttgattgcatctgagttttctct
tcaggaatgtgtttactgtgtgagttaataccccattcattacaacttcc
aggatgattctcccctctgcatatactctgttactttcagttatgtataa
atatctgctgaaataccatctgaagtttttactaaatgaaccgtccccct
tatgtttataatttaggcatactcaaaataatgactttttactcaacaac
aaactgtgtaaacaaaaccgatttcatgggagcataaggagagctaggga
tctaattcagttgtgggaatgcttgctaggatcttataaaacaaaccatg
atgcacacccctataattgtagcagaaacaggtaaaggtaagataatcag
aatttcaaagtcatttgagttcaaggccagtttgaagtacatgaaaccct
agcttaaaaggaacttttactggaattaaaataatcctaccactcattga
tatagtcattataacttcatagtgagtatgcatttgctgtccatcataac
caattaaaatgcagagttggaaaacctaatccaaagagttatctctacaa
aataaagccatgcctaaggctcaggggacattgaggaagaggaggcagaa
agattctaagagccaaagaataaggtagcttgctctgagattctgtctcc
taggaataccagatgattcacccataaagtttcactgatagactgtccaa
atgtgaaatgagcaatgatgacaccaatggatatgccaactggatgaaga
aaagtcctggagacctcaacctacaaaagacctgtagaaatgaggaagtc
tgggagtggaagaggtactcatttttttt
aactttatattttaagtcctgatttgaatataaattttcttattatattt
ataaggaagtaaacaagaaaaaagatcctcatattcctcctgctctcaaa
atctccctttctcctctctctctctctctctctctctgcatttagaaaga
tttatttcaataaacaaggtcatgagacacagatattggcaggtgcataa
agaaagatatattaggttgtgctagatttttttctatttaataaacttgc
actgagttaaaaatacaacatgcaccacatagaaactccatacccacagt
gtgtagtacaaagagtcttttcttctcttgtcattcttgcttatgattcc
accaagtctgcaccaagcttttctcttgattcttcttaggatagtagtcc
tggagttttgaaatcaaatacaatgcttggcaggggtgttttacttattt
atttttattttcttttctctttttgcatattcatgtgtgtgtgtgtgtgt
gtgtgtgtgtgtgtgtgtgtgtgtg
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr5_51548249_51549333
seq2: B6Ng01-061F04.b_48_1126

seq1  GAATTCTTTCAACAGGCTAGATTTTTGGCAATATTTTCCACGAGTCATTA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTTTCAACAGGCTAGATTTTTGGCAATATTTTCCACGAGTCATTA  50

seq1  AATAACCATTGAGTACCTGGAATGTTGACCTCGTTACACCCAGTTGTGAA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATAACCATTGAGTACCTGGAATGTTGACCTCGTTACACCCAGTTGTGAA  100

seq1  CAAAGCATTCTGGAAGCTTCCTTCAAGGGAACTAGAAGTGATGCCATTTT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAAGCATTCTGGAAGCTTCCTTCAAGGGAACTAGAAGTGATGCCATTTT  150

seq1  CTACTCCCAACTAAGGCTGTGCTGGGCTTGTCTGTGCTTCCTTGATCTTC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTACTCCCAACTAAGGCTGTGCTGGGCTTGTCTGTGCTTCCTTGATCTTC  200

seq1  CATGTGTTTCATACAACGTTTTTAGAGTTGATTGCATCTGAGTTTTCTCT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATGTGTTTCATACAACGTTTTTAGAGTTGATTGCATCTGAGTTTTCTCT  250

seq1  TCAGGAATGTGTTTACTGTGTGAGTTAATACCCCATTCATTACAACTTCC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAGGAATGTGTTTACTGTGTGAGTTAATACCCCATTCATTACAACTTCC  300

seq1  AGGATGATTCTCCCCTCTGCATATACTCTGTTACTTTCAGTTATGTATAA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGATGATTCTCCCCTCTGCATATACTCTGTTACTTTCAGTTATGTATAA  350

seq1  ATATCTGCTGAAATACCATCTGAAGTTTTTACTAAATGAACCGTCCCCCT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATATCTGCTGAAATACCATCTGAAGTTTTTACTAAATGAACCGTCCCCCT  400

seq1  TATGTTTATAATTTAGGCATACTCAAAATAATGACTTTTTACTCAACAAC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATGTTTATAATTTAGGCATACTCAAAATAATGACTTTTTACTCAACAAC  450

seq1  AAACTGTGTAAACAAAACCGATTTCATGGGAGCATAAGGAGAGCTAGGGA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAACTGTGTAAACAAAACCGATTTCATGGGAGCATAAGGAGAGCTAGGGA  500

seq1  TCTAATTCAGTTGTGGGAATGCTTGCTAGGATCTTATAAAACAAACCATG  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTAATTCAGTTGTGGGAATGCTTGCTAGGATCTTATAAAACAAACCATG  550

seq1  ATGCACACCCCTATAATTGTAGCAGAAACAGGTAAAGGTAAGATAATCAG  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGCACACCCCTATAATTGTAGCAGAAACAGGTAAAGGTAAGATAATCAG  600

seq1  AATTTCAAAGTCATTTGAGTTCAAGGCCAGTTTGAAGTACATGAAACCCT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATTTCAAAGTCATTTGAGTTCAAGGCCAGTTTGAAGTACATGAAACCCT  650

seq1  AGCTTAAAAGGAACTTTTACTGGAATTAAAATAATCCTACCACTCATTGA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCTTAAAAGGAACTTTTACTGGAATTAAAATAATCCTACCACTCATTGA  700

seq1  TATAGTCATTATAACTTCATAGTGAGTATGCATTTGCTGTCCATCATAAC  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATAGTCATTATAACTTCATAGTGAGTATGCATTTGCTGTCCATCATAAC  750

seq1  CAATTAAAATGCAGAGTTGGAAAACCTAATCCAAAGAGTTATCTCTACAA  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAATTAAAATGCAGAGTTGGAAAACCTAATCCAAAGAGTTATCTCTACAA  800

seq1  AATAAAGCCATGCCTAAGGCTCAGGGGACATTGAGGAAGAGGAGGCAGAA  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATAAAGCCATGCCTAAGGCTCAGGGGACATTGAGGAAGAGGAGGCAGAA  850

seq1  AGATTCTAAGAGCCAAAGAATAAGGTAGCTTGCTCTGAGATTCTGTCTCC  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGATTCTAAGAGCCAAAGAATAAGGTAGCTTGCTCTGAGATTCTGTCTCC  900

seq1  TAGGAATACCAGATGATTCACCCATAAAGTTTCACTGATAAGACTGTCCA  950
      ||||||||||||||||||||||||||||||||||||||| ||||||||||
seq2  TAGGAATACCAGATGATTCACCCATAAAGTTTCACTGAT-AGACTGTCCA  949

seq1  AATGTGAAATGAGCAATGATGACACCAATGGATATGCCAAACTGGATGAA  1000
      |||||||||||||||||||||||||||||||||||||| |||||||||||
seq2  AATGTGAAATGAGCAATGATGACACCAATGGATATGCC-AACTGGATGAA  998

seq1  GAAAAGTCCTGGAGACCTCAAACCTACAAAAAGAACTGTAGGAAAATGAG  1050
      ||||||||||||||||||| ||||||| |||||| ||||||  |||||||
seq2  GAAAAGTCCTGGAGACCTC-AACCTAC-AAAAGACCTGTAG--AAATGAG  1044

seq1  GAAGTCTGGGAGTGGAAGAGGTACTCCTTTTTTTT  1085
      |||||||||||||||||||||||||| ||||||||
seq2  GAAGTCTGGGAGTGGAAGAGGTACTCATTTTTTTT  1079

seq1: chr5_51759043_51759573
seq2: B6Ng01-061F04.g_68_598 (reverse)

seq1  CACACACACACACACACACACACACACACACACACACACACATGAATATG  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACACACACACACACACACACACACACACACACACACACACATGAATATG  50

seq1  CAAAAAGAGAAAAGAAAATAAAAATAAATAAGTAAAACACCCCTGCCAAG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAAAAGAGAAAAGAAAATAAAAATAAATAAGTAAAACACCCCTGCCAAG  100

seq1  CATTGTATTTGATTTCAAAACTCCAGGACTACTATCCTAAGAAGAATCAA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATTGTATTTGATTTCAAAACTCCAGGACTACTATCCTAAGAAGAATCAA  150

seq1  GAGAAAAGCTTGGTGCAGACTTGGTGGAATCATAAGCAAGAATGACAAGA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGAAAAGCTTGGTGCAGACTTGGTGGAATCATAAGCAAGAATGACAAGA  200

seq1  GAAGAAAAGACTCTTTGTACTACACACTGTGGGTATGGAGTTTCTATGTG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAGAAAAGACTCTTTGTACTACACACTGTGGGTATGGAGTTTCTATGTG  250

seq1  GTGCATGTTGTATTTTTAACTCAGTGCAAGTTTATTAAATAGAAAAAAAT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGCATGTTGTATTTTTAACTCAGTGCAAGTTTATTAAATAGAAAAAAAT  300

seq1  CTAGCACAACCTAATATATCTTTCTTTATGCACCTGCCAATATCTGTGTC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTAGCACAACCTAATATATCTTTCTTTATGCACCTGCCAATATCTGTGTC  350

seq1  TCATGACCTTGTTTATTGAAATAAATCTTTCTAAATGCAGAGAGAGAGAG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCATGACCTTGTTTATTGAAATAAATCTTTCTAAATGCAGAGAGAGAGAG  400

seq1  AGAGAGAGAGAGGAGAAAGGGAGATTTTGAGAGCAGGAGGAATATGAGGA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAGAGAGAGAGGAGAAAGGGAGATTTTGAGAGCAGGAGGAATATGAGGA  450

seq1  TCTTTTTTCTTGTTTACTTCCTTATAAATATAATAAGAAAATTTATATTC  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTTTTTTCTTGTTTACTTCCTTATAAATATAATAAGAAAATTTATATTC  500

seq1  AAATCAGGACTTAAAATATAAAGTTGAATTC  531
      |||||||||||||||||||||||||||||||
seq2  AAATCAGGACTTAAAATATAAAGTTGAATTC  531