BAC Information

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BAC

Clone NameB6Ng01-061M21
Chromosome5 (Build37)X (Build37)
Map Location 18,084,511 - 18,084,577140,819,556 - 140,820,268
singlet/doubletsingletsinglet
Overlap genenone
Upstream geneSema3c, Cd36, Gnat3, Gnai1, LOC100041818, LOC668167
Downstream gene4921504A21Rik, Magi2
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-061M21.bB6Ng01-061M21.g
ACCDH882384DH882385
length1,028713
definitionDH882384|Mus musculus domesticus DNA, BAC clone: B6Ng01-061M21, 5' end.DH882385|Mus musculus domesticus DNA, BAC clone: B6Ng01-061M21, 3' end.
singlet/doubletsingletsinglet
BLAST hituniqueunique
Map location.(18,084,511 - 18,084,577)(140,819,556 - 140,820,268)
sequence
gaattctcaactgaggaatacagaagggctgagaagcacctgaaaaaatg
ttcaacatcattagtcatcagggaaatgcaaatcaaaacaaccctgagat
tctacctcacaccagtcagaatcgctaagatcaaaacttcaggtgacagc
agatgctgtcgaggatgtggagaaagagcaacactcctccattgctggtg
ggattgcaagctgtacaaccactctggaaatcagtctggtagttcttcag
aaaattggacatagtactactggaagatccagcattatctctcctgggca
tatacccagaaaatgttccaactggtaataaggacacatgctcaaatatg
ttcatagcagccttatttataatagccagaagctggaaagaacccaaaat
ctctcaacagaggaatggatcagaaagtgtggtacatttacacaatggag
tacttttcggttatttaaaacaatgaattatgaaattcctaggcaaatgg
atgcatctggaggatatcatcctgagtgaagtaacacactcacaaatgaa
gtcacttgatatgcactcactgataaatgcaaatcaaaacaaccctgaga
ttctacctcacaccagtcagaatcgctaagatcaaaaattcaggtgacag
cagatgctgtcgaggatgtggagaaaggggaacactcctccattgttggt
gggattgcaagcttgtaccaccactctggaaatcagtctggaggttcctc
agaaaattggacatagtactaccggaagatccagcaatacctctcctggg
catatatccagaagatgtcccaaccggtaagaaagacacatgctccacta
tgttcatagcagccttatttataatagccagaagctggaaagaaccagat
gcccctcaacagaggaatggatacagaaaatgtggtacattacacatgga
gtactactcagctataaaaacaatggatttatgaaattcttggacaaatg
gatgcatctggaggatatcatctggagt
gaattccattttcctatacaattcttattttttttaaaaaaaatatacat
ttagttgagcagtggtggtgcacttctttaatcccagcactcaggaggca
gagacagatagatctctgagttcaaaggcagcctgatctgcagaatgagt
tccaggccagaggtatacagagaacccctgtctcaaaaaataaaaggcct
taaaattattctttttaattaaagtcttgaaagatctgggattattttta
ttttatgtagatgggtattttgcctggatgtgcattgcctgtgggtgtca
gggttccctggtagtggagttacagatggttgcaagccactgtgtgggta
gtgagagcagaacccagttcctaaccactctgccattgctccataccctg
aaagccttattctgccatctagtaggtggacagatgagtttttttttcct
tttcttaaaaaaaaaaaaaccaatttgtatttgaaataaaattatattct
tttccctcatatttctcccatacacccccactcacaagttgatagctgct
ttaattttcattgtttcatacatgtgtgcgcatgtgtgcatgtccattca
catgtatgtgcaaatatatgtaaatacaactggtttgactctgattttgc
tgtttgtgcatatatagtttcagagctgacctctgcactggacaaccagt
ggggaggggggtg
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr5_18084511_18084577
seq2: B6Ng01-061M21.b_360_426 (reverse)

seq1  CTTCTGGCTATTATAAATAAGGCTGCTATGAACATAGTGGAGCATGTGTC  50
      |||||||||||||||||||||||||||||||||||| | |||||||||||
seq2  CTTCTGGCTATTATAAATAAGGCTGCTATGAACATATTTGAGCATGTGTC  50

seq1  CTTCTTACCAGTTGGAA  67
      ||| |||||||||||||
seq2  CTTATTACCAGTTGGAA  67

seq1: chrX_140819556_140820268
seq2: B6Ng01-061M21.g_70_782 (reverse)

seq1  CACCCCCCTCCCCACTGGTTGTCCAGTGCAGAGGTCAGCTCTGAAACTAT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACCCCCCTCCCCACTGGTTGTCCAGTGCAGAGGTCAGCTCTGAAACTAT  50

seq1  ATATGCACAAACAGCAAAATCAGAGTCAAACCAGTTGTATTTACATATAT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATATGCACAAACAGCAAAATCAGAGTCAAACCAGTTGTATTTACATATAT  100

seq1  TTGCACATACATGTGAATGGACATGCACACATGCGCACACATGTATGAAA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGCACATACATGTGAATGGACATGCACACATGCGCACACATGTATGAAA  150

seq1  CAATGAAAATTAAAGCAGCTATCAACTTGTGAGTGGGGGTGTATGGGAGA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAATGAAAATTAAAGCAGCTATCAACTTGTGAGTGGGGGTGTATGGGAGA  200

seq1  AATATGAGGGAAAAGAATATAATTTTATTTCAAATACAAATTGGTTTTTT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATATGAGGGAAAAGAATATAATTTTATTTCAAATACAAATTGGTTTTTT  250

seq1  TTTTTTTAAGAAAAGGAAAAAAAAACTCATCTGTCCACCTACTAGATGGC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTTTTAAGAAAAGGAAAAAAAAACTCATCTGTCCACCTACTAGATGGC  300

seq1  AGAATAAGGCTTTCAGGGTATGGAGCAATGGCAGAGTGGTTAGGAACTGG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAATAAGGCTTTCAGGGTATGGAGCAATGGCAGAGTGGTTAGGAACTGG  350

seq1  GTTCTGCTCTCACTACCCACACAGTGGCTTGCAACCATCTGTAACTCCAC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTCTGCTCTCACTACCCACACAGTGGCTTGCAACCATCTGTAACTCCAC  400

seq1  TACCAGGGAACCCTGACACCCACAGGCAATGCACATCCAGGCAAAATACC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACCAGGGAACCCTGACACCCACAGGCAATGCACATCCAGGCAAAATACC  450

seq1  CATCTACATAAAATAAAAATAATCCCAGATCTTTCAAGACTTTAATTAAA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATCTACATAAAATAAAAATAATCCCAGATCTTTCAAGACTTTAATTAAA  500

seq1  AAGAATAATTTTAAGGCCTTTTATTTTTTGAGACAGGGGTTCTCTGTATA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGAATAATTTTAAGGCCTTTTATTTTTTGAGACAGGGGTTCTCTGTATA  550

seq1  CCTCTGGCCTGGAACTCATTCTGCAGATCAGGCTGCCTTTGAACTCAGAG  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTCTGGCCTGGAACTCATTCTGCAGATCAGGCTGCCTTTGAACTCAGAG  600

seq1  ATCTATCTGTCTCTGCCTCCTGAGTGCTGGGATTAAAGAAGTGCACCACC  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCTATCTGTCTCTGCCTCCTGAGTGCTGGGATTAAAGAAGTGCACCACC  650

seq1  ACTGCTCAACTAAATGTATATTTTTTTTAAAAAAAATAAGAATTGTATAG  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTGCTCAACTAAATGTATATTTTTTTTAAAAAAAATAAGAATTGTATAG  700

seq1  GAAAATGGAATTC  713
      |||||||||||||
seq2  GAAAATGGAATTC  713