BAC Information

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BAC

Clone NameB6Ng01-062G07
Chromosome5 (Build37)
Map Location 38,223,680 - 38,426,335
singlet/doubletdoublet
Overlap genenone
Upstream genePpp2r2c, Wfs1, Jakmip1, EG330070, Gm1043, LOC100040936, Crmp1, Evc, Evc2, LOC100040355, LOC100040988, Stk32b, Cytl1, Msx1
Downstream geneStx18, Nsg1, LOC100040397, Zfp509, Lyar, Tmem128, Otop1, Drd5, 4930487D11Rik, Slc2a9, Wdr1, 4930421P07Rik, 6820424L24Rik, Clnk
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-062G07.bB6Ng01-062G07.g
ACCDH882806DH882807
length291377
definitionDH882806|Mus musculus domesticus DNA, BAC clone: B6Ng01-062G07, 5' end.DH882807|Mus musculus domesticus DNA, BAC clone: B6Ng01-062G07, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(38,426,044 - 38,426,335)(38,223,680 - 38,224,062)
sequence
tatgtcagctggctggctaatttcggaggctgggtaccacagactcggca
gcattggtcttggggaaatactattgtagtctcctatacaagtaaggtgt
caggaatacagacccagcaaggataggatgttgtggtacacacacataac
ctgattcagccctgaagatgttcatctttcagaggtcggcccagaaattt
gaacttatacaagtcttcactgcggttctgactgagtggtttttggaatc
aataaatgttcgtgctgagagtctaatcttgagtcgggggt
tggtgcacagagagacctgagtctctatgaagtcccacccctcccagctt
ccagagctcagatcctgacctaagtccagcctcaaagccataaaccttgg
ataaatgatcaaacctcaatagcctacttgcatcgcagggaaaggtcttt
ctcttggaggctgtgaagaagcccacttgtaggattaggcaggaaggtct
ggaatccaaggccaatttgggatatgtgacatcctgattcaaaaacaaaa
aaacaaataaaagcaagcaaataatagttaccaccattgccaatactatt
cttaacttgtttttaactaattcagtttcaatagtgactgtttttaatcc
ctaattcacactcgggggggggggggg
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr5_38426044_38426335
seq2: B6Ng01-062G07.b_53_343 (reverse)

seq1  ACCCCCCACTCAAGTTGTGACTCTCAGCATGAACATTTATTGACTCCAAG  50
      |||||| ||||||| |  ||||||||||| ||||||||||||| ||||| 
seq2  ACCCCCGACTCAAGATTAGACTCTCAGCACGAACATTTATTGATTCCAAA  50

seq1  AACCAATTTGTCAGAACCACAGTGAAGACTTGTATAAGTACAAACTTCTG  100
      ||||| |  ||||||||| |||||||||||||||||||| |||| |||||
seq2  AACCACTCAGTCAGAACCGCAGTGAAGACTTGTATAAGTTCAAATTTCTG  100

seq1  AGACGACTTCTGAAAGATGAACATCTTCAGGGCTGAATCAGGTTATGTGT  150
       | |||| ||||||||||||||||||||||||||||||||||||||||||
seq2  GGCCGACCTCTGAAAGATGAACATCTTCAGGGCTGAATCAGGTTATGTGT  150

seq1  GTGTACCACAACATCCTATCCTTGCTGGGTCTGTATTCCTGACACCTTAC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGTACCACAACATCCTATCCTTGCTGGGTCTGTATTCCTGACACCTTAC  200

seq1  TTGTATAGGAGACTACAAGAGTCTTTCCCCAAGACCAATGCTGCCGAGTC  250
      |||||||||||||||||| ||| |||||||||||||||||||||||||||
seq2  TTGTATAGGAGACTACAATAGTATTTCCCCAAGACCAATGCTGCCGAGTC  250

seq1  TGTGGTACCCAGACACCGAGGCTTAGCCAGCCAGCTGACATA  292
      |||||||||||| | ||||   ||||||||||||||||||||
seq2  TGTGGTACCCAGCCTCCGA-AATTAGCCAGCCAGCTGACATA  291

seq1: chr5_38223680_38224062
seq2: B6Ng01-062G07.g_71_453

seq1  GAATTCTGGTGCACAGAGAGACCTGAGTCTCTATGAAGTCCCACCCCTCC  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTGGTGCACAGAGAGACCTGAGTCTCTATGAAGTCCCACCCCTCC  50

seq1  CAGCTTCCAGAGCTCAGATCCTGACCTAAGTCCAGCCTCAAAGCCATAAA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGCTTCCAGAGCTCAGATCCTGACCTAAGTCCAGCCTCAAAGCCATAAA  100

seq1  CCTTGGATAAATGATCAAACCTCAATAGCCTACTTGCATCGCAGGGAAAG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTTGGATAAATGATCAAACCTCAATAGCCTACTTGCATCGCAGGGAAAG  150

seq1  GTCTTTCTCTTGGAGGCTGTGAAGAAGCCCACTTGTAGGATTAGGCAGGA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCTTTCTCTTGGAGGCTGTGAAGAAGCCCACTTGTAGGATTAGGCAGGA  200

seq1  AGGTCTGGAATCCAAGGCCAATTTGGGATATGTGACATCCTGATTCAAAA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGTCTGGAATCCAAGGCCAATTTGGGATATGTGACATCCTGATTCAAAA  250

seq1  ACAAAAAAACAAATAAAAGCAAGCAAATAATAGTTACCACCATTGCCAAT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAAAAAAACAAATAAAAGCAAGCAAATAATAGTTACCACCATTGCCAAT  300

seq1  ACTATTCTTAACTTGTTTTTAACTAATTCAGTTTCAATAGTGACTGTTTT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTATTCTTAACTTGTTTTTAACTAATTCAGTTTCAATAGTGACTGTTTT  350

seq1  TAATCCCTAATTCACACTCGGGGGGGGGGGGGG  383
      |||||||||||||||||||||||||||||||||
seq2  TAATCCCTAATTCACACTCGGGGGGGGGGGGGG  383