BAC Information

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BAC

Clone NameB6Ng01-062G13
Chromosome5 (Build37)
Map Location 11,204,315 - 11,205,417
singlet/doubletsinglet
Overlap geneLOC100042819
Upstream geneLOC100041395, LOC381612, EG625586, LOC242809, LOC623849, LOC100041408, LOC667880, EG667888, EG667901, EG667907, LOC667916, LOC100041472, EG545728, LOC667942
Downstream geneLOC667948, EG667949, Speer1-ps1, EG667956, LOC667961, EG667967, LOC100042858, LOC667974, EG667986, EG623898, EG668001, LOC668008, EG668011, LOC668017, EG668021, LOC623998, EG668043, LOC545732, LOC384144
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-062G13.bB6Ng01-062G13.g
ACCDH882816DH882817
length8741,091
definitionDH882816|Mus musculus domesticus DNA, BAC clone: B6Ng01-062G13, 5' end.DH882817|Mus musculus domesticus DNA, BAC clone: B6Ng01-062G13, 3' end.
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
gaattctttgttcagttctgagtcccattttttaatggggttattcgatt
ttctgaagtccaccttcttgagttctttatatatgttggatattaatccc
ctatctgatttaggataggtaaagatcctttcccaatctgttggtggtct
ttatgtcttattgacggtgtcttttgccttgcagaaactttggagtttca
ttaggtcctatttgtcaattctcgatcttacagcacaagccattgctgtt
ctgttcaggaatttttcccctgtgcccatatcttcaaggcttttcaccac
tttttcctctataagtttcagtgtctctggttttatgtgaagttctttga
tccacttagatttgaccttagtacaaggagataagtatggatcgattcgc
attttctacatgataacaaccagttgtgccagcaccaattgttgaaaatg
ctttctttcttccactggatggttttagctcccttgtcgaagatcaagtg
accataggtgtgtgggttcatttctgggtcttcaattctattccattggt
ctacttgtctgtctctatagcagtaccatgcagtttttatcacaattgct
ctgtagtaaagctgaagtcaggcattgtgattccaccagaggctctttta
tccttgagaagactttttgctatcctaggttttttgttattccagatgaa
ttgcaaattgctccttctaattcgttgaagaattgagttggaattttgat
ggggattgcatttaatctgtagattgctttgggaagatagccatattaca
gttgatcctgccaaccatgagctggagatctctccctcttctgagatttc
ttatttctttcttctagatgaatt
gaattctacaggaaagttggggaaattggggaagcgctgagggagtgaaa
atatatgatccaaaaataatatatgaaaaattaataaaaaggttcaaaga
ataaacaagtgagcatgtttctaaatattaattaaagtctttgcatttaa
gacaacagttattcaatttaaaattaaccattttgtctcatccttgtatt
ggtctccttgctgtgttcagctagtacaggatgtaacatagtgccctttc
ctcatacacaggctgaaaaatattctgcaaaaatttctttcaagcagtgt
ttgaattgacagagtttggtaaacttaaaatttgtttcctcacagttctt
tgaaactaagttcttgatgtgtttctctatatattggttctagtagctga
taacttatatgagaacggaataaagtgcaggttttattttccctcagtgt
cctggagacgcaggtgtttatgtatcactgcccatatcatagtgttcctg
tgataatgtggtgtcaattggcagctatagaagcaattgtgctctaagag
ttgatttctgatgtctttaccaaaactaggactttacacccatgatagta
ctttttatgatttggcttctccaatgcaaagtaaggggaatctgatttca
tgaaatcaatatagtttgctttaaacaactacaaagtagagatattggct
aagtgtggaaagccttaaacagtgatgggagcaggtgtgtctggaaataa
aaccaaaaaagaaagctaggcaaaaagaatataaataacattttatgtgt
tgtataatatttgctatgtgaaagatatgggatattaaaggattaactgg
aggtgagggcagtggacaataagtataataaataatagttaggtaaacca
aaactaagtacacatgaaaaacttgataggaaccaactattagtaagcta
atctcaaatatgtttaaaagattaaaggagcttgagacttgttctgcatt
cattagcctatgcagacacatttattcatgactatcacaaggcgagcaca
aaattcttcctatattattcgtcagccatatgaggaggctc
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr5_11204315_11205417
seq2: B6Ng01-062G13.g_70_1160

seq1  GAATTCTACAGGAAAGTTGGGGAAATTGGGGAAGCGCTGAGGGAGTGAAA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTACAGGAAAGTTGGGGAAATTGGGGAAGCGCTGAGGGAGTGAAA  50

seq1  ATATATGATCCAAAAATAATATATGAAAAATTAATAAAAAGGTTCAAAGA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATATATGATCCAAAAATAATATATGAAAAATTAATAAAAAGGTTCAAAGA  100

seq1  ATAAACAAGTGAGCATGTTTCTAAATATTAATTAAAGTCTTTGCATTTAA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAAACAAGTGAGCATGTTTCTAAATATTAATTAAAGTCTTTGCATTTAA  150

seq1  GACAACAGTTATTCAATTTAAAATTAACCATTTTGTCTCATCCTTGTATT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACAACAGTTATTCAATTTAAAATTAACCATTTTGTCTCATCCTTGTATT  200

seq1  GGTCTCCTTGCTGTGTTCAGCTAGTACAGGATGTAACATAGTGCCCTTTC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTCTCCTTGCTGTGTTCAGCTAGTACAGGATGTAACATAGTGCCCTTTC  250

seq1  CTCATACACAGGCTGAAAAATATTCTGCAAAAATTTCTTTCAAGCAGTGT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCATACACAGGCTGAAAAATATTCTGCAAAAATTTCTTTCAAGCAGTGT  300

seq1  TTGAATTGACAGAGTTTGGTAAACTTAAAATTTGTTTCCTCACAGTTCTT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGAATTGACAGAGTTTGGTAAACTTAAAATTTGTTTCCTCACAGTTCTT  350

seq1  TGAAACTAAGTTCTTGATGTGTTTCTCTATATATTGGTTCTAGTAGCTGA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAAACTAAGTTCTTGATGTGTTTCTCTATATATTGGTTCTAGTAGCTGA  400

seq1  TAACTTATATGAGAACGGAATAAAGTGCAGGTTTTATTTTCCCTCAGTGT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAACTTATATGAGAACGGAATAAAGTGCAGGTTTTATTTTCCCTCAGTGT  450

seq1  CCTGGAGACGCAGGTGTTTATGTATCACTGCCCATATCATAGTGTTCCTG  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTGGAGACGCAGGTGTTTATGTATCACTGCCCATATCATAGTGTTCCTG  500

seq1  TGATAATGTGGTGTCAATTGGCAGCTATAGAAGCAATTGTGCTCTAAGAG  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGATAATGTGGTGTCAATTGGCAGCTATAGAAGCAATTGTGCTCTAAGAG  550

seq1  TTGATTTCTGATGTCTTTACCAAAACTAGGACTTTACACCCATGATAGTA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGATTTCTGATGTCTTTACCAAAACTAGGACTTTACACCCATGATAGTA  600

seq1  CTTTTTATGATTTGGCTTCTCCAATGCAAAGTAAGGGGAATCTGATTTCA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTTTTATGATTTGGCTTCTCCAATGCAAAGTAAGGGGAATCTGATTTCA  650

seq1  TGAAATCAATATAGTTTGCTTTAAACAACTACAAAGTAGAGATATTGGCT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAAATCAATATAGTTTGCTTTAAACAACTACAAAGTAGAGATATTGGCT  700

seq1  AAGTGTGGAAAGCCTTAAACAGTGATGGGAGCAGGTGTGTCTGGAAATAA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGTGTGGAAAGCCTTAAACAGTGATGGGAGCAGGTGTGTCTGGAAATAA  750

seq1  AACCAAAAAAGAAAGCTAGGCAAAAAGAATATAAATAACATTTTATGTGT  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACCAAAAAAGAAAGCTAGGCAAAAAGAATATAAATAACATTTTATGTGT  800

seq1  TGTATAATATTTGCTATGTGAAAGATATGGGATATTAAAGGATTAACTGG  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTATAATATTTGCTATGTGAAAGATATGGGATATTAAAGGATTAACTGG  850

seq1  AGGTGAGGGCAGTGGACAATAAGTATAATAAATAATAGTTAGGTAAACCA  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGTGAGGGCAGTGGACAATAAGTATAATAAATAATAGTTAGGTAAACCA  900

seq1  AAACTAAGTACACATGAAAAAACTTGATAGGAACCAACTAATTAGTAAGC  950
      |||||||||||||||| |||||||||||||||||||||| ||||||||||
seq2  AAACTAAGTACACATG-AAAAACTTGATAGGAACCAACT-ATTAGTAAGC  948

seq1  TAATCTCAAAATATGTTTTAAAAGATTAAATGAGCTTGAGAACTTGTTCT  1000
      ||||||| ||||||| |||||||||||||| ||||||||| |||||||||
seq2  TAATCTC-AAATATG-TTTAAAAGATTAAAGGAGCTTGAG-ACTTGTTCT  995

seq1  GCATTCATTAGCCTATGCAGACACATTTATTCAATGACTATCACAAGGCG  1050
      |||||||||||||||||||||||||||||||| |||||||||||||||||
seq2  GCATTCATTAGCCTATGCAGACACATTTATTC-ATGACTATCACAAGGCG  1044

seq1  AGGCACAAAATACCTCCCTATAATTTATTCGTCAGGCCATATGAGGAAGG  1100
      | |||||||||  || ||||||  |||||||||| ||||||||||| |||
seq2  A-GCACAAAAT-TCTTCCTATA--TTATTCGTCA-GCCATATGAGG-AGG  1088

seq1  CTC  1103
      |||
seq2  CTC  1091