BAC Information

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BAC

Clone NameB6Ng01-062K16
Chromosome5 (Build37)
Map Location 104,370,287 - 104,458,789
singlet/doubletdoublet
Overlap geneHsd17b13, EG666629, Hsd17b11
Upstream geneMapk10, LOC666563, 4930429D17Rik, LOC100041039, 1700021F02Rik, LOC100041049, Ptpn13, Slc10a6, 1700016H13Rik, Aff1, Klhl8
Downstream geneNudt9, Sparcl1, LOC100041136, Dspp, Dmp1, LOC100041145, Ibsp, Mepe, Spp1, Pkd2, BC005561, LOC100042165, LOC100041172, D930016D06Rik, 2310012P17Rik, LOC640963, LOC100041199, LOC666726, C230055K05Rik, LOC100041216, Abcg3, LOC626471, EG545790, 5830443L24Rik
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-062K16.bB6Ng01-062K16.g
ACCDH882993DH882994
length791943
definitionDH882993|Mus musculus domesticus DNA, BAC clone: B6Ng01-062K16, 5' end.DH882994|Mus musculus domesticus DNA, BAC clone: B6Ng01-062K16, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(104,457,997 - 104,458,789)(104,370,287 - 104,371,216)
sequence
gaattccttactaggccactgtaatacccaatgcagagcatcaaaaggaa
aaaatagataaattagactttacgaaaattaaaaacattaagtgcttcca
aaggcactattgacaaaggggggaaaatcaacctattgaatgggaaaaaa
tattgacaaagcaaatatctgatataggcatccagaacatataaagaatt
ctggaaactcagcaactaaaagattgcccagtttttaaaagaaaaggaat
tttgtcaacacttgtcagagaaaatacatggccagtaaagacgtgtttaa
aagagaatacaacgttgagaggagtgggaagggtttaggaggatgtctgg
gcaggagtggggtaaatatcatcaaagtttgtgtatgagatcctcaaaga
attcattaaaatgttatgttcaacatcattttttaaatacaaaccagacc
cacagtgggatatcacatcatattcacaggattaatataaatataatttt
taaaatagaaaacaataaaagtcaggatgtggagaaataggagctttcat
acattgatggtggagatataaaacagtcaaaatgttaaacagatatcata
ttattatatggcctacacccctattcctgtgcctgttcctgtttggggct
ggggggggtggagagaattgaatacacacaaaaacttcttcagaagtgtt
catagtagcatcacttttgtgagtgtgaacacgcacaccatggcacatgt
gtagatgtcaaagacaactttgagaatcatttgtcttcttt
gaattcaaacctggacttgttcttggttaaacaactccaaggagtttctt
cccttaatgcaacagtgatgaattatcggtgacttggatttaaacactaa
tgctttataatccacaggttaaatacagtttaattggtgtgtgcagtaaa
tcttatctctatagataacatactcaaagaagtaaggagagattgtcaac
actgagaactgagtattaactcaggaggcattttattgaaacaggcttat
gagtatctccccttagtgctgttgtcttgccttttctggtaacgttctca
gtcggtggtcggatttcaccaatgccatgtaactctcttccatattgtga
aattactcatgggagccgttgtgtagacagggaccctgtagtccaagagt
ttttgactagttctgttttcttttttatgtttttttttttaaattttgtg
aagagcacatagaaaagatagtgtttaccctcttaactatttataaatat
atggacaggtcgggggcagtaagtatgctgatgttgctgtggacctatct
ccagaactcagtcatcatccttgtatctattaaatagcgacttccactcc
atgattccccagggtgctggaaactacccctccctttgtctctgggaact
tgatttttttcaggtatttctgataaatcacccaatacatgcaggattta
tctctgtgtcttgtttctttcacttagagtaaagcctaaggctcgtaggc
tgcagtagattcactctttccttccttccttccttccttccttccttcct
tccttccttccttcctttcttttgtttttgtttttcaagacagggtttct
ctgtgtagccctggctgtcctggaattcactctgtagtccaggctggctt
gaactcagaaaatctgcctgctctgcctcccaagtgctgggat
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr5_104457997_104458789
seq2: B6Ng01-062K16.b_50_840 (reverse)

seq1  AAAGAAGACAAATGATTCTGCAAAGTTGTCTTTGACATCTACACATGTGC  50
      ||||||||||||||||||| ||||||||||||||||||||||||||||||
seq2  AAAGAAGACAAATGATTCT-CAAAGTTGTCTTTGACATCTACACATGTGC  49

seq1  CATGGTGTGCGTGTTCACACTCACAATAGTGATTGCTACTATGAACACTT  100
      |||||||||||||||||||||||||| ||||| |||||||||||||||||
seq2  CATGGTGTGCGTGTTCACACTCACAAAAGTGA-TGCTACTATGAACACTT  98

seq1  ATGAAGAAGTTTTTGTGTGTCTTCAATTCTCTCCACCCCCCCCAGCCCCA  150
       ||||||||||||||||||| |||||||||||||||||||||||||||||
seq2  CTGAAGAAGTTTTTGTGTGTATTCAATTCTCTCCACCCCCCCCAGCCCCA  148

seq1  AACAGGAACAGGCACAGGAATAGGGGTGTAGGCCATATAATAATATGATA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACAGGAACAGGCACAGGAATAGGGGTGTAGGCCATATAATAATATGATA  198

seq1  TCTGTTTAACATTTTGACTGTTTTATATCTCCACCATCAATGTATGAAAG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTGTTTAACATTTTGACTGTTTTATATCTCCACCATCAATGTATGAAAG  248

seq1  CTCCTATTTCTCCACATCCTGACTTTTATTGTTTTCTATTTTAAAAATTA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCCTATTTCTCCACATCCTGACTTTTATTGTTTTCTATTTTAAAAATTA  298

seq1  TATTTATATTAATCCTGTGAATATGATGTGATATCCCACTGTGGGTCTGG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATTTATATTAATCCTGTGAATATGATGTGATATCCCACTGTGGGTCTGG  348

seq1  TTTGTATTTAAAAAATGATGTTGAACATAACATTTTAATGAATTCTTTGA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTGTATTTAAAAAATGATGTTGAACATAACATTTTAATGAATTCTTTGA  398

seq1  GGATCTCATACACAAACTTTGATGATATTTACCCCACTCCTGCCCAGACA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGATCTCATACACAAACTTTGATGATATTTACCCCACTCCTGCCCAGACA  448

seq1  TCCTCCTAAACCCTTCCCACTCCTCTCAACGTTGTATTCTCTTTTAAACA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCTCCTAAACCCTTCCCACTCCTCTCAACGTTGTATTCTCTTTTAAACA  498

seq1  CGTCTTTACTGGCCATGTATTTTCTCTGACAAGTGTTGACAAAATTCCTT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGTCTTTACTGGCCATGTATTTTCTCTGACAAGTGTTGACAAAATTCCTT  548

seq1  TTCTTTTAAAAACTGGGCAATCTTTTAGTTGCTGAGTTTCCAGAATTCTT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTTTTAAAAACTGGGCAATCTTTTAGTTGCTGAGTTTCCAGAATTCTT  598

seq1  TATATGTTCTGGATGCCTATATCAGATATTTGCTTTGTCAATATTTTTTC  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATATGTTCTGGATGCCTATATCAGATATTTGCTTTGTCAATATTTTTTC  648

seq1  CCATTCAATAGGTTGATTTTCCCCCCTTTGTCAATAGTGCCTTTGGAAGC  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCATTCAATAGGTTGATTTTCCCCCCTTTGTCAATAGTGCCTTTGGAAGC  698

seq1  ACTTAATGTTTTTAATTTTCGTAAAGTCTAATTTATCTATTTTTTCCTTT  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTTAATGTTTTTAATTTTCGTAAAGTCTAATTTATCTATTTTTTCCTTT  748

seq1  TGATGCTCTGCATTGGGTATTACAGTGGCCTAGTAAGGAATTC  793
      |||||||||||||||||||||||||||||||||||||||||||
seq2  TGATGCTCTGCATTGGGTATTACAGTGGCCTAGTAAGGAATTC  791

seq1: chr5_104370287_104371216
seq2: B6Ng01-062K16.g_68_993

seq1  GAATTCAAACCTGGACTTGTTCTTGGTTAAACAACTCCAAGGAGTTTCTT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCAAACCTGGACTTGTTCTTGGTTAAACAACTCCAAGGAGTTTCTT  50

seq1  CCCTTAATGCAACAGTGATGAATTATCGGTGACTTGGATTTAAACACTAA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCTTAATGCAACAGTGATGAATTATCGGTGACTTGGATTTAAACACTAA  100

seq1  TGCTTTATAATCCACAGGTTAAATACAGTTTAATTGGTGTGTGCAGTAAA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCTTTATAATCCACAGGTTAAATACAGTTTAATTGGTGTGTGCAGTAAA  150

seq1  TCTTATCTCTATAGATAACATACTCAAAGAAGTAAGGAGAGATTGTCAAC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTTATCTCTATAGATAACATACTCAAAGAAGTAAGGAGAGATTGTCAAC  200

seq1  ACTGAGAACTGAGTATTAACTCAGGAGGCATTTTATTGAAACAGGCTTAT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTGAGAACTGAGTATTAACTCAGGAGGCATTTTATTGAAACAGGCTTAT  250

seq1  GAGTATCTCCCCTTAGTGCTGTTGTCTTGCCTTTTCTGGTAACGTTCTCA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGTATCTCCCCTTAGTGCTGTTGTCTTGCCTTTTCTGGTAACGTTCTCA  300

seq1  GTCGGTGGTCGGATTTCACCAATGCCATGTAACTCTCTTCCATATTGTGA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCGGTGGTCGGATTTCACCAATGCCATGTAACTCTCTTCCATATTGTGA  350

seq1  AATTACTCATGGGAGCCGTTGTGTAGACAGGGACCCTGTAGTCCAAGAGT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATTACTCATGGGAGCCGTTGTGTAGACAGGGACCCTGTAGTCCAAGAGT  400

seq1  TTTTGACTAGTTCTGTTTTCTTTTTTATGTTTTTTTTTTTAAATTTTGTG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTGACTAGTTCTGTTTTCTTTTTTATGTTTTTTTTTTTAAATTTTGTG  450

seq1  AAGAGCACATAGAAAAGATAGTGTTTACCCTCTTAACTATTTATAAATAT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGAGCACATAGAAAAGATAGTGTTTACCCTCTTAACTATTTATAAATAT  500

seq1  ATGGACAGGTCGGGGGCAGTAAGTATGCTGATGTTGCTGTGGACCTATCT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGGACAGGTCGGGGGCAGTAAGTATGCTGATGTTGCTGTGGACCTATCT  550

seq1  CCAGAACTCAGTCATCATCCTTGTATCTATTAAATAGCGACTTCCACTCC  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAGAACTCAGTCATCATCCTTGTATCTATTAAATAGCGACTTCCACTCC  600

seq1  ATGATTCCCCAGGGTGCTGGAAACTACCCCTCCCTTTGTCTCTGGGAACT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGATTCCCCAGGGTGCTGGAAACTACCCCTCCCTTTGTCTCTGGGAACT  650

seq1  TGATTTTTTTCAGGTATTTCTGATAAATCACCCAATACATGCAGGATTTA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGATTTTTTTCAGGTATTTCTGATAAATCACCCAATACATGCAGGATTTA  700

seq1  TCTCTGTGTCTTGTTTCTTTCACTTAGAGTAAAGCCTAAGGCTCGTAGGC  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTCTGTGTCTTGTTTCTTTCACTTAGAGTAAAGCCTAAGGCTCGTAGGC  750

seq1  TGCAGTAGATTCACTCTTTCCTTCCTTCCTTCCTTCCTTCCTTCCTTCCT  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCAGTAGATTCACTCTTTCCTTCCTTCCTTCCTTCCTTCCTTCCTTCCT  800

seq1  TCCTTCCTTCCTTCCTTTCTTTTTGTTTTTTGTTTTTTCAAGACAGGGTT  850
      ||||||||||||||||||| ||||||||||   |||||||||||||||||
seq2  TCCTTCCTTCCTTCCTTTC-TTTTGTTTTT--GTTTTTCAAGACAGGGTT  847

seq1  TCTCTGTGTAGCCCTGGCTGTCCTGGAACTCACTCTGTAGTCCAGGCTGG  900
      |||||||||||||||||||||||||||| |||||||||||||||||||||
seq2  TCTCTGTGTAGCCCTGGCTGTCCTGGAATTCACTCTGTAGTCCAGGCTGG  897

seq1  CCTTGAACTCAG-AAATCTGCCTGCCTCTGC  930
       ||||||||||| ||||||||||| ||||||
seq2  -CTTGAACTCAGAAAATCTGCCTG-CTCTGC  926