BAC Information

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BAC

Clone NameB6Ng01-062L11
Chromosome5 (Build37)
Map Location 76,544,677 - 76,674,592
singlet/doubletdoublet
Overlap geneSrd5a2l, Tmem165, Apc-ps1, Clock, Ube2n-ps1
Upstream genePdgfra, LOC100039125, LOC100039143, LOC100039158, LOC100039169, Kit, EG664874, Kdr, Gabarapl2-ps5_758.1
Downstream geneEG665055, Pdcl2, Pafah1b1-ps3, Nmu, LOC665065, EG639545, Exoc1, Cep135, LOC100039117, A730089K16Rik, LOC665107, LOC100039299, C530008M17Rik, A230062G08Rik, Ppat, LOC664998, Paics, Srp72, Arl9, 1700023E05Rik, Hod, Spink2
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-062L11.bB6Ng01-062L11.g
ACCDH883025DH883026
length1,0831,061
definitionDH883025|Mus musculus domesticus DNA, BAC clone: B6Ng01-062L11, 5' end.DH883026|Mus musculus domesticus DNA, BAC clone: B6Ng01-062L11, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(76,673,499 - 76,674,592)(76,544,677 - 76,545,752)
sequence
gaattcacacaactttttatcacttattccagcaaaaaatcagttagaat
tctgttgtcacatgcttcgaggaacaatagacccaaaggagccatccacc
tatgaatatgtgagatttataggaaattttaaatctttaaccagtggtaa
gttaaaatgtttcttttataatgtgttttaactggctgtttttatttttc
caagctcttagatgcttaaatatcagtaacgacatgtctccttgctgttt
tagtatcaacttcaacacacaatggttttgaaggaactatacaacgcaca
cataggccttcttatgaagatagagtttgttttgtagctactgtcagatt
agctacacctcagttcatcaaggtatgcttctgattttaattgctctagt
gcattccagttcatgatatgagatttggtcttgtgagatttttgttatct
ttagaaggttgaaacttttacgaacattgaaatagtagtggccattgagt
tactaaatatgtatgaacttcatatttttaccacagttatcttagtgtat
tctttgcaggtatcccatggcagtatatcaccattttcctgcttttgtac
agagtttaatgtgtggtttaatgtgtgtagtttactatcaggaaagaagt
ctgaaaaaaaaaatccagatgaattaaaaagaaaaaaaaaagaatgtgct
ttactgggtataacttgctatttggttcttttttgattaatttttttaat
gtgtatggatgttttgtctgcgtgcatatttatgtatcacgtgcatgccg
gggagccagaggagggcctgcctgagactggagttacatacagttgtcag
ttaccatgttagaactgaaccaaagtccgcctggagaggccgagccatcg
ctctagccaacccctgctctttgagttttaaattacacatttttatttct
gtatccataagcacgtgtttagtagggagtagaaagtgactgcctcagtc
cctagagacaggaagagccagggtgacattaaatttgggtgacagcgttg
tttagaacagcgcctgatacagtagaagactat
gaattcaatgaacagcagcatcctgtagagactgcttatggtctcccatc
tgttctccctaacaaaacaaaggcaaggagatttcatgtgagccttcaca
ctacagaagtccacggtcaagaagtccattgcccatcaacgttatcaccg
gactttacgctggctgcccttgagaattccattacctaatgtgactctcc
cagcagctctgccaggctatcagcacagatggtatttgtgtttccaaagg
aggaaataaaggttaagaagctacgggacttgccagtgtcacttaggagc
aggtcagaaggtcaaatcagtttcctgtggttgtggagcctctgtgggaa
cacctctgctactcaccttatcccagtgaccaagagattccaggtagtca
gggcatgggacaggtgggggaggtaagaaggaagtcctaattcacaccag
tcactatctgtcacctgcctgctctacaaaaaggaaaccaaatgcccatt
tcctctgtaagaacgttcctttcaattaagcccctcacataattcaactc
cactgtgcttgagccagccttgggcacagggtgaaagcactcaaaacagg
ccgctgtcgtctgctcttctccgtgaggaagtcggccctcttttccagct
cacccctccttctccaagctcaccacacaggaaaactgttctccatgttt
gcctgcgctcttctgagtactgaaaggctgtcctgtggtcatatgccacc
tataaattcaccaaaaatacatcttccttccccattgaagtgacacgact
ttctggcctagtggctttgtttctagccaacaacaaaagaaggaatctga
ttaggaaaagtctcttggactggttttctagatccttaatacagtcttca
tgttgcagtgaccccaaccgtaaattattccgttgcttcttcacactgta
atttgctacagtcgtaaatgcaacataaatagctgtgtttccctatagtc
tcagatacccctgtgaaaggtgtgtgagtactcgaagggtctcgactcct
gccttaagtga
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr5_76673499_76674592
seq2: B6Ng01-062L11.b_49_1131 (reverse)

seq1  ATAGTCTTCTAACTGTTAACTCAGGCGCTGTTCTATACTACGCTGTCACC  50
      |||||||||| |||||    ||||||||||||||| || |||||||||||
seq2  ATAGTCTTCT-ACTGT---ATCAGGCGCTGTTCTAAACAACGCTGTCACC  46

seq1  CAAATTTAAATGTCACCCTGGCTTCTTTCCTGTCTCTAGGGACTGAGGCA  100
      ||||||| |||||||||||||||   ||||||||||||||||||||||||
seq2  CAAATTT-AATGTCACCCTGGCT--CTTCCTGTCTCTAGGGACTGAGGCA  93

seq1  GTTCACTTTTCTACTTCCCTACTAAACACGTGCTTATGGATACAAGAAAT  150
      | |||| ||||||| |||||||||||||||||||||||||||| ||||||
seq2  G-TCAC-TTTCTAC-TCCCTACTAAACACGTGCTTATGGATAC-AGAAAT  139

seq1  AAAAATGTGTAATTTAAAACTCAAAGAGCAGGGGTTGGCTAGAGCGATGG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAAATGTGTAATTTAAAACTCAAAGAGCAGGGGTTGGCTAGAGCGATGG  189

seq1  CTCGGCCTCTCCAGGCGGACTTTGGTTCAGTTCTAACATGGTAACTGACA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCGGCCTCTCCAGGCGGACTTTGGTTCAGTTCTAACATGGTAACTGACA  239

seq1  ACTGTATGTAACTCCAGTCTCAGGCAGGCCCTCCTCTGGCTCCCCGGCAT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTGTATGTAACTCCAGTCTCAGGCAGGCCCTCCTCTGGCTCCCCGGCAT  289

seq1  GCACGTGATACATAAATATGCACGCAGACAAAACATCCATACACATTAAA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCACGTGATACATAAATATGCACGCAGACAAAACATCCATACACATTAAA  339

seq1  AAAATTAATCAAAAAAGAACCAAATAGCAAGTTATACCCAGTAAAGCACA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAATTAATCAAAAAAGAACCAAATAGCAAGTTATACCCAGTAAAGCACA  389

seq1  TTCTTTTTTTTTTCTTTTTAATTCATCTGGATTTTTTTTTTCAGACTTCT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTTTTTTTTTTCTTTTTAATTCATCTGGATTTTTTTTTTCAGACTTCT  439

seq1  TTCCTGATAGTAAACTACACACATTAAACCACACATTAAACTCTGTACAA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCCTGATAGTAAACTACACACATTAAACCACACATTAAACTCTGTACAA  489

seq1  AAGCAGGAAAATGGTGATATACTGCCATGGGATACCTGCAAAGAATACAC  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGCAGGAAAATGGTGATATACTGCCATGGGATACCTGCAAAGAATACAC  539

seq1  TAAGATAACTGTGGTAAAAATATGAAGTTCATACATATTTAGTAACTCAA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAGATAACTGTGGTAAAAATATGAAGTTCATACATATTTAGTAACTCAA  589

seq1  TGGCCACTACTATTTCAATGTTCGTAAAAGTTTCAACCTTCTAAAGATAA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGCCACTACTATTTCAATGTTCGTAAAAGTTTCAACCTTCTAAAGATAA  639

seq1  CAAAAATCTCACAAGACCAAATCTCATATCATGAACTGGAATGCACTAGA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAAAATCTCACAAGACCAAATCTCATATCATGAACTGGAATGCACTAGA  689

seq1  GCAATTAAAATCAGAAGCATACCTTGATGAACTGAGGTGTAGCTAATCTG  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCAATTAAAATCAGAAGCATACCTTGATGAACTGAGGTGTAGCTAATCTG  739

seq1  ACAGTAGCTACAAAACAAACTCTATCTTCATAAGAAGGCCTATGTGTGCG  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAGTAGCTACAAAACAAACTCTATCTTCATAAGAAGGCCTATGTGTGCG  789

seq1  TTGTATAGTTCCTTCAAAACCATTGTGTGTTGAAGTTGATACTAAAACAG  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGTATAGTTCCTTCAAAACCATTGTGTGTTGAAGTTGATACTAAAACAG  839

seq1  CAAGGAGACATGTCGTTACTGATATTTAAGCATCTAAGAGCTTGGAAAAA  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAGGAGACATGTCGTTACTGATATTTAAGCATCTAAGAGCTTGGAAAAA  889

seq1  TAAAAACAGCCAGTTAAAACACATTATAAAAGAAACATTTTAACTTACCA  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAAAACAGCCAGTTAAAACACATTATAAAAGAAACATTTTAACTTACCA  939

seq1  CTGGTTAAAGATTTAAAATTTCCTATAAATCTCACATATTCATAGGTGGA  1000
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGGTTAAAGATTTAAAATTTCCTATAAATCTCACATATTCATAGGTGGA  989

seq1  TGGCTCCTTTGGGTCTATTGTTCCTCGAAGCATGTGACAACAGAATTCTA  1050
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGCTCCTTTGGGTCTATTGTTCCTCGAAGCATGTGACAACAGAATTCTA  1039

seq1  ACTGATTTTTTGCTGGAATAAGTGATAAAAAGTTGTGTGAATTC  1094
      ||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTGATTTTTTGCTGGAATAAGTGATAAAAAGTTGTGTGAATTC  1083

seq1: chr5_76544677_76545752
seq2: B6Ng01-062L11.g_70_1130

seq1  GAATTCAATGAACAGCAGCATCCTGTAGAGACTGCTTATGGTCTCCCATC  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCAATGAACAGCAGCATCCTGTAGAGACTGCTTATGGTCTCCCATC  50

seq1  TGTTCTCCCTAACAAAACAAAGGCAAGGAGATTTCATGTGAGCCTTCACA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTTCTCCCTAACAAAACAAAGGCAAGGAGATTTCATGTGAGCCTTCACA  100

seq1  CTACAGAAGTCCACGGTCAAGAAGTCCATTGCCCATCAACGTTATCACCG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTACAGAAGTCCACGGTCAAGAAGTCCATTGCCCATCAACGTTATCACCG  150

seq1  GACTTTACGCTGGCTGCCCTTGAGAATTCCATTACCTAATGTGACTCTCC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACTTTACGCTGGCTGCCCTTGAGAATTCCATTACCTAATGTGACTCTCC  200

seq1  CAGCAGCTCTGCCAGGCTATCAGCACAGATGGTATTTGTGTTTCCAAAGG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGCAGCTCTGCCAGGCTATCAGCACAGATGGTATTTGTGTTTCCAAAGG  250

seq1  AGGAAATAAAGGTTAAGAAGCTACGGGACTTGCCAGTGTCACTTAGGAGC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGAAATAAAGGTTAAGAAGCTACGGGACTTGCCAGTGTCACTTAGGAGC  300

seq1  AGGTCAGAAGGTCAAATCAGTTTCCTGTGGTTGTGGAGCCTCTGTGGGAA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGTCAGAAGGTCAAATCAGTTTCCTGTGGTTGTGGAGCCTCTGTGGGAA  350

seq1  CACCTCTGCTACTCACCTTATCCCAGTGACCAAGAGATTCCAGGTAGTCA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACCTCTGCTACTCACCTTATCCCAGTGACCAAGAGATTCCAGGTAGTCA  400

seq1  GGGCATGGGACAGGTGGGGGAGGTAAGAAGGAAGTCCTAATTCACACCAG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGCATGGGACAGGTGGGGGAGGTAAGAAGGAAGTCCTAATTCACACCAG  450

seq1  TCACTATCTGTCACCTGCCTGCTCTACAAAAAGGAAACCAAATGCCCATT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCACTATCTGTCACCTGCCTGCTCTACAAAAAGGAAACCAAATGCCCATT  500

seq1  TCCTCTGTAAGAACGTTCCTTTCAATTAAGCCCCTCACATAATTCAACTC  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCTCTGTAAGAACGTTCCTTTCAATTAAGCCCCTCACATAATTCAACTC  550

seq1  CACTGTGCTTGAGCCAGCCTTGGGCACAGGGTGAAAGCACTCAAAACAGG  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACTGTGCTTGAGCCAGCCTTGGGCACAGGGTGAAAGCACTCAAAACAGG  600

seq1  CCGCTGTCGTCTGCTCTTCTCCGTGAGGAAGTCGGCCCTCTTTTCCAGCT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCGCTGTCGTCTGCTCTTCTCCGTGAGGAAGTCGGCCCTCTTTTCCAGCT  650

seq1  CACCCCTCCTTCTCCAAGCTCACCACACAGGAAAACTGTTCTCCATGTTT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACCCCTCCTTCTCCAAGCTCACCACACAGGAAAACTGTTCTCCATGTTT  700

seq1  GCCTGCGCTCTTCTGAGTACTGAAAGGCTGTCCTGTGGTCATATGCCACC  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCTGCGCTCTTCTGAGTACTGAAAGGCTGTCCTGTGGTCATATGCCACC  750

seq1  TATAAATTCACC-AAAATACATCTTCCTTCCCCATTGAAGTGACACGACT  799
      |||||||||||| |||||||||||||||||||||||||||||||||||||
seq2  TATAAATTCACCAAAAATACATCTTCCTTCCCCATTGAAGTGACACGACT  800

seq1  TTCTGGCCTAAGTGGCTTTGTTTCTAGCCAACAACAAAAGAAGGAATCTG  849
      ||||||||| ||||||||||||||||||||||||||||||||||||||||
seq2  TTCTGGCCT-AGTGGCTTTGTTTCTAGCCAACAACAAAAGAAGGAATCTG  849

seq1  ATTAGGAAAAGTCTCTTGGACTGGTTTTCTAGATCCTTTAATACAGTTCT  899
      |||||||||||||||||||||||||||||||||||| ||||||||| |||
seq2  ATTAGGAAAAGTCTCTTGGACTGGTTTTCTAGATCC-TTAATACAG-TCT  897

seq1  TCATGTTGCAGTGAACCCCAACCGTAAAATTATTTCCGTTGCTTCTTCAC  949
      ||||||||||||| ||||||||||| |||||| |||||||||||||||||
seq2  TCATGTTGCAGTG-ACCCCAACCGT-AAATTA-TTCCGTTGCTTCTTCAC  944

seq1  AACTGTAATTTTGCTACAGTCGTAAATTGCAACATAAATAGCTGTGTTTT  999
       ||||||| ||||||||||||||||| ||||||||||||||||||| |||
seq2  -ACTGTAA-TTTGCTACAGTCGTAAA-TGCAACATAAATAGCTGTG-TTT  990

seq1  CCCTATAGTCTCAGATAACCCCTGTGAAAAGGGTGTGTGAGTACTCGAAG  1049
      |||||||||||||||| ||||||||||||  |||||||||||||||||| 
seq2  CCCTATAGTCTCAGAT-ACCCCTGTGAAA--GGTGTGTGAGTACTCGAA-  1036

seq1  GGGTCTCGACCCACTGCCTTAGAGTGA  1076
      |||||||||| | |||||||| |||||
seq2  GGGTCTCGACTC-CTGCCTTA-AGTGA  1061