BAC Information

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BAC

Clone NameB6Ng01-063B14
Chromosome2 (Build37)5 (Build37)
Map Location 150,040,158 - 150,041,242110,191,582 - 110,192,335
singlet/doubletsingletsinglet
Overlap geneEG245174
Upstream geneLOC433483, LOC383754, LOC100043593, LOC241715, Cst10, EG667048, C530025M09Rik, OTTMUSG00000015750, LOC279056, Zfp120
Downstream gene3300002I08Rik, LOC100043832, OTTMUSG00000015730, LOC668924, OTTMUSG00000015743, LOC545472, Cst7, 2310001A20Rik, Acss1, Vsx1, Entpd6, LOC100043605, Pygb, Abhd12, Gins1, LOC668925, 4930519N13Rik, LOC668926, Nanp, LOC433486, LOC381390, 4930442J19Rik
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-063B14.bB6Ng01-063B14.g
ACCDH883295DH883296
length1,074994
definitionDH883295|Mus musculus domesticus DNA, BAC clone: B6Ng01-063B14, 5' end.DH883296|Mus musculus domesticus DNA, BAC clone: B6Ng01-063B14, 3' end.
singlet/doubletsingletsinglet
BLAST hituniqueunique
Map location.(150,040,158 - 150,041,242)(110,191,582 - 110,192,335)
sequence
gaattcattttacatcccaatcgttgcctcccatcccgccatacgcagta
cctccccagactcactctccttcacctctgagagggatggggacaccacc
ctggtgcatacttttacaccagggataatgccaacttttttttaatgttg
tggtgaccccaatcctaaaataaacaacaaatttgcagacaaccatcgta
aaaatgtcttttgacccccaaaggattgcaactaataggtttgtgccaag
ttctttgtcagactgcctccggtcaacattgcatcataaaatatgaatac
gtcagtctgtggagtttagttgtggtcctaagttttagtcttttacttac
ctactcatcaagaccatatattaaacctaagctcctggttatgttttacc
ttgtaacaaaaagacagaatgacattcaaatgtttctttgtaaataattt
aaataacttctggaatttaccagcagtacttcctaccaggaaataagcgg
cttgtattccttgtgtaagagaactcatattgctattcactagcacatgc
tgtgtgttttacactgacttatcagtgtgaaaaatattgtataaatggcc
ttcccaatgtccaagaatcaccaacatgccaagattcccttgcaactgaa
atactttcaacagtggcctttcctatcttgaagtgttcaactgcattcaa
ccatgctatgtccctccagcacatacacacccagctaatttttcatctgt
gcctatcagaggcaggcaggatctctgaattcttttgcagtgttagaaaa
tgcactttctgtcttctaagtttcaagggactggggtcacaggtgttgat
tcatagaataatcaaaagggatcctggaataaatatccaaattcatacat
gatttttaaaaaaacctgggttttcagtctgcatgacagagctagcagaa
atgatagcagtcattttagaatttttctgtagtgacagtagagtgagata
tctgaagatcactggagagtgacacagctcatcagattttttctaaggga
tttctgaagtcagaacccaagaat
gaattcatactgtagagaaaccctataaatgtaatcaatgtggtaaattc
tttgcacaaagcaaccattttgtacgacataaaagaacacatactggaga
gaaaccctatgaatgtaatcaatgtgataaagcctttgcatgtcaaacta
gtctcctgtatcataaaagaacacattctggagagaaactctatgtctgt
aatgaatgtggcaaagcctttgtacttcaaagttatcttcagatacataa
aagaacacatactggagagaaaccctttggatgtgaccagtgtgataagg
catttgcacaaaacagtcatctcctaacacataaaagaacacatactgga
gagaaaccctttggatgtgaccagtgtgataaggcatttgcacaaaacag
tcatctcttaacacataaaagaactcatactggagagaaaccctatgaat
gtgagcaatgtggcaaagcctttgcaagtaatagtaatctgcaagtgcat
aaaaaaatgcacactggagagaaaccctatgaatgtaagcagtgtggtaa
agcctttgggtatcaaagtggtctgcaaaagcataaacgaacacatactg
gagagaaaccctatgaatgtaatcagtgtgataaggcatttgcatgtcaa
gctagtctcctgaatcataaacgatcacacactggtgagaagccatatga
atgtagtgaatgtggtaaagcctttgtacttccccgttatcttcaaatac
ataaaaggacacatactggagagaaaccctttgaatgtgaccaatgtgat
aaagcctttgctcgaaacactcttctcctaaaacataaaagaatacatac
tggacagaaagcctatggatgcaagcaatgtggcaaagcctttgcaaatc
acagtaatctccaagtgcataaaagaacacatactggagagaagccctac
gaatgtaagcagtgtggtaaagctttgggtgtcaaagtggtctg
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr2_150040158_150041242
seq2: B6Ng01-063B14.b_45_1118

seq1  GAATTCATTTTACATCCCAATCGTTGCCTCCCATCCCGCCATACGCAGTA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCATTTTACATCCCAATCGTTGCCTCCCATCCCGCCATACGCAGTA  50

seq1  CCTCCCCAGACTCACTCTCCTTCACCTCTGAGAGGGATGGGGACACCACC  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTCCCCAGACTCACTCTCCTTCACCTCTGAGAGGGATGGGGACACCACC  100

seq1  CTGGTGCATACTTTTACACCAGGGATAATGCCAACTTTTTTTTAATGTTG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGGTGCATACTTTTACACCAGGGATAATGCCAACTTTTTTTTAATGTTG  150

seq1  TGGTGACCCCAATCCTAAAATAAACAACAAATTTGCAGACAACCATCGTA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGTGACCCCAATCCTAAAATAAACAACAAATTTGCAGACAACCATCGTA  200

seq1  AAAATGTCTTTTGACCCCCAAAGGATTGCAACTAATAGGTTTGTGCCAAG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAATGTCTTTTGACCCCCAAAGGATTGCAACTAATAGGTTTGTGCCAAG  250

seq1  TTCTTTGTCAGACTGCCTCCGGTCAACATTGCATCATAAAATATGAATAC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTTTGTCAGACTGCCTCCGGTCAACATTGCATCATAAAATATGAATAC  300

seq1  GTCAGTCTGTGGAGTTTAGTTGTGGTCCTAAGTTTTAGTCTTTTACTTAC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCAGTCTGTGGAGTTTAGTTGTGGTCCTAAGTTTTAGTCTTTTACTTAC  350

seq1  CTACTCATCAAGACCATATATTAAACCTAAGCTCCTGGTTATGTTTTACC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTACTCATCAAGACCATATATTAAACCTAAGCTCCTGGTTATGTTTTACC  400

seq1  TTGTAACAAAAAGACAGAATGACATTCAAATGTTTCTTTGTAAATAATTT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGTAACAAAAAGACAGAATGACATTCAAATGTTTCTTTGTAAATAATTT  450

seq1  AAATAACTTCTGGAATTTACCAGCAGTACTTCCTACCAGGAAATAAGCGG  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATAACTTCTGGAATTTACCAGCAGTACTTCCTACCAGGAAATAAGCGG  500

seq1  CTTGTATTCCTTGTGTAAGAGAACTCATATTGCTATTCACTAGCACATGC  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTGTATTCCTTGTGTAAGAGAACTCATATTGCTATTCACTAGCACATGC  550

seq1  TGTGTGTTTTACACTGACTTATCAGTGTGAAAAATATTGTATAAATGGCC  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTGTGTTTTACACTGACTTATCAGTGTGAAAAATATTGTATAAATGGCC  600

seq1  TTCCCAATGTCCAAGAATCACCAACATGCCAAGATTCCCTTGCAACTGAA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCCCAATGTCCAAGAATCACCAACATGCCAAGATTCCCTTGCAACTGAA  650

seq1  ATACTTTCAACAGTGGCCTTTCCTATCTTGAAGTGTTCAACTGCATTCAA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATACTTTCAACAGTGGCCTTTCCTATCTTGAAGTGTTCAACTGCATTCAA  700

seq1  CCATGCTATGTCCCTCCAGCACATACACACCCAGCTAATTTTTCATCTGT  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCATGCTATGTCCCTCCAGCACATACACACCCAGCTAATTTTTCATCTGT  750

seq1  GCCTATCAGAGGCAGGCAGGATCTCTGAATTCTTTTGCAGTGTTAGAAAA  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCTATCAGAGGCAGGCAGGATCTCTGAATTCTTTTGCAGTGTTAGAAAA  800

seq1  TGCACTTTCTGTCTTCTAAGTTTCAAGGGACTGGGGTCACAGGTGTTGAT  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCACTTTCTGTCTTCTAAGTTTCAAGGGACTGGGGTCACAGGTGTTGAT  850

seq1  TCATAGAATAATCAAAAGGGATCCTGGAATAAATATCCAAATTCATACAT  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCATAGAATAATCAAAAGGGATCCTGGAATAAATATCCAAATTCATACAT  900

seq1  GATTTTTAAAAAAAACCTGGGTTTTCAGTCTGCATGACAAGAGCTAGCAG  950
      ||||||| |||||||||||||||||||||||||||||| |||||||||| 
seq2  GATTTTT-AAAAAAACCTGGGTTTTCAGTCTGCATGAC-AGAGCTAGCA-  947

seq1  GAAATGATAGCAGTTCATTTTTAGAATTTTTCTGTAGTGACAGTAGAGTG  1000
      ||||||||||||| ||| ||||||||||||||||||||||||||||||||
seq2  GAAATGATAGCAG-TCA-TTTTAGAATTTTTCTGTAGTGACAGTAGAGTG  995

seq1  AGATATCTGAAGATCACTGGAGAGTGAACACAGCTCATCAAGAATTTTTT  1050
      |||||||||||||||||||||||||| |||||||||||||   |||||||
seq2  AGATATCTGAAGATCACTGGAGAGTG-ACACAGCTCATCA--GATTTTTT  1042

seq1  CTAAAGGGATTTCTGAGGTCAGAAACCCAAAGAAT  1085
      || ||||||||||||| |||||||  || ||||||
seq2  CT-AAGGGATTTCTGAAGTCAGAA--CCCAAGAAT  1074

seq1: chr5_110191582_110192335
seq2: B6Ng01-063B14.g_153_338 (reverse)

seq1  GTTTCTTTCCAGTATGTGTTCTTTTATGTATATGTAGAGAACTGTGATAT  50
                                                        
seq2  --------------------------------------------------  0

seq1  ACAAATTTTAGGAACAAGCAAAATAAACATGTTCTAAGTACTCCCTTTTT  100
                                                        
seq2  --------------------------------------------------  0

seq1  TATTATTGGACTCCATTTAATCATAGAATGAAACTACGTTCAAGTTCCTA  150
                                                        
seq2  --------------------------------------------------  0

seq1  AGCTATAGGGGAGCTGGAGACTTCCCAATAGCTGAATAGCTTCTGTTACT  200
                                                        
seq2  --------------------------------------------------  0

seq1  CATCTTTTCTTTCACAAAATATAATCACTATTCTTAACCACACACACACA  250
                                                        
seq2  --------------------------------------------------  0

seq1  AACAAACAAATGGATATGATTGGTTAGACTGTAACACCTATATTCTGTAT  300
                                                        
seq2  --------------------------------------------------  0

seq1  CCATTAATAGCCGCCAATCACATAAAGAAAGCCCCTATCCCTAAGTGCTG  350
                                                        
seq2  --------------------------------------------------  0

seq1  ATGGGTGGGAAATGTATCGGTAACTTGGAACACGTTTGTGGTTTTCAAGA  400
                                                        
seq2  --------------------------------------------------  0

seq1  TTAAAAGCTTTGTTACATGGGTTGCAGTTCAGCTCCTGACTATATTCTAC  450
                                                        
seq2  --------------------------------------------------  0

seq1  AGTCCTGATTGATCAGTAGTGGCTTGTTTATAATAAATTCTTGTCATCTT  500
                                                        
seq2  --------------------------------------------------  0

seq1  CATTGACCTGGTGTTGGAGTTGTACTGGACTTAAGTGGACACATAACACA  550
                                                        
seq2  --------------------------------------------------  0

seq1  AAGGCTTTATCCCGTTGCTTATATGCATAGAATCTCTCCAGTATGAATAC  600
                                   |  |||||||||||||  | |
seq2  -----------------------------GTTTCTCTCCAGTATGTGTTC  21

seq1  TTTCATG---ATGAAGAAGACTATAAAATGTGCAGACTTCACCATATTAA  647
      ||| |||    ||||||  ||| | || |    || |||  ||| ||| |
seq2  TTTTATGTATCTGAAGATAACTTTGAAGTACAAAGGCTTTGCCACATTCA  71

seq1  ACAAGTTCGTGGCGTATGTATGCATTCTTTCTGCCTTT--------GAAG  689
        |    | | | || | | | ||   | | | | |||        | ||
seq2  TTACAGACATAGAGTTTCTCTCCAGAATGTGTTCTTTTATGATACAGGAG  121

seq1  ATGACTTTGATGTGCAAAGGCTTTACCACTTTGATTACATTCATAGGGTT  739
      |  | |||||  ||||||||||||| ||| ||||||||||||||||||||
seq2  ACTAGTTTGACATGCAAAGGCTTTATCACATTGATTACATTCATAGGGTT  171

seq1  TCTCTCCAGTATGTG  754
      |||||||||||||||
seq2  TCTCTCCAGTATGTG  186