BAC Information

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BAC

Clone NameB6Ng01-063D01
Chromosome5 (Build37)
Map Location 148,476,780 - 148,637,462
singlet/doubletdoublet
Overlap geneFlt1, LOC100039825
Upstream geneUsp12, 1700041I07Rik, Rpl21, Rasl11a, LOC100039699, LOC627218, Gtf3a, Mtif3, Lnx2, Rpo1-3, Gsh1, Pdx1, Cdx2, EG231903, LOC622952, Flt3, Map1lc3-ps3, LOC384254, LOC100039805, Pan3
Downstream genePomp, Slc46a3, C130038G02Rik, LOC100041819, Slc7a1, LOC100041842, Ubl3, 2210417A02Rik, LOC100041869
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-063D01.bB6Ng01-063D01.g
ACCDH883359DH883360
length1,235642
definitionDH883359|Mus musculus domesticus DNA, BAC clone: B6Ng01-063D01, 5' end.DH883360|Mus musculus domesticus DNA, BAC clone: B6Ng01-063D01, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(148,476,780 - 148,478,075)(148,636,821 - 148,637,462)
sequence
gaattctgggtaacaacaccaaaccctgctgagaagaccctaataaagcc
agtgcaaactgcccaggacgcagtgttctggcttaattcaaaacacaaaa
tgaaatgtttgatagcaattgtaagagacagttaattcattagaaacaat
tacttgttgggttccctgcagtaggatgaagagtgggcaaagagagagat
tttataaagcacgggcaagtggagagggggcattggtctggaagatgaag
tagcgcttctgttctcaggactgtgtatgaaatattaataagggccgttg
tctggacattcgtgttgggcagtatgtgggggtgcttcctcgtctcacaa
ttatctacgagaacgcaagaagtgtctcattagtcagtggacattcactc
tcttggctactgataaaagtctcttgtatcagatggccggttttacttgg
ctgagtttggtctcaaatgtccagttcaagaggcctgggcaagtggtctt
cttaaatcctcatttggaccccaggttttgtttacggccaattaaaattc
cctacagaatgtcttattggagccctcggacttagacgcactctgcaaag
actgatgtcagagccttgggtggaaagtctcagagtactgaaggacagtg
cagtagatattaaaacaggaggaaagtggtcatatttacacagacacagc
cttcttagatgaccacttccttcagacatctgacccgctgaaaactctcc
ttctgaaggaagagagcagaatacagggcctaaaatggcggcagcgtaaa
aactaatccacgttcttgccagccgccgattcaattgggtccttgaggac
atttctaattaactgccagccacaattgtcttgtttgtatcctgttcgtt
ctgcacaccccgctggtgcccaaactatgattctctggaacgagctaccc
ctgacacatccctaatgattctggcggctttctgcagatttgcaactata
aacaataaaaggatgcattagacgccctctcgagccatctttccctgatt
tgtagcaacctctcccgcagagcaggggcgaatgaactagtctgatgtga
cttctcttagctgtgcaccctgaccctcattgtgtttcagattgggagtc
aagatctgatggcagataagtgctattgttctacaagtactgtgactcta
tgaccatatagaccttgcaacaggtttttggggtc
gaattcttcagaaggaactgagcagcctctccgtctctatctacttccct
ctggagagtctctcgggatgaaatcaaagcgaacgaaacaggaagtggtc
cttatcctgcgatctcactttggtgcccaaagggaggcctcttccccatg
gcgataagaacacgtgtcttctcaaagatgtgagcagggtaagggagcct
ctgacgcgcttgtcagcaggatgctgaatgcttggccaggacccgaatca
taatctcggggagctaaaagctgacatgaaggcccaagccatgaatgaac
cccgccccccgcatggaaggagagtggcgggtgtgggggccaggccttca
cagtatcacacagaactttcacaccgggactacatatccttcctgcctgt
gtatctgccttccggattcccggtgaagatgctgatgcctttaacaggaa
aggatgtgggagcgttggggccccagagcccatcaggttgcatcaggagc
aatcagcacccaaagaacaaagcccagaagggaaactgactgacaatatc
tgtgtgggtctgctggatgccagagaaatcctctcactctgagcttcatg
aagctcagtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtg
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr5_148476780_148478075
seq2: B6Ng01-063D01.b_49_1283

seq1  GAATTCTGGGTAACAACACCAAACCCTGCTGAGAAGACCCTAATAAAGCC  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTGGGTAACAACACCAAACCCTGCTGAGAAGACCCTAATAAAGCC  50

seq1  AGTGCAAACTGCCCAGGACGCAGTGTTCTGGCTTAATTCAAAACACAAAA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTGCAAACTGCCCAGGACGCAGTGTTCTGGCTTAATTCAAAACACAAAA  100

seq1  TGAAATGTTTGATAGCAATTGTAAGAGACAGTTAATTCATTAGAAACAAT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAAATGTTTGATAGCAATTGTAAGAGACAGTTAATTCATTAGAAACAAT  150

seq1  TACTTGTTGGGTTCCCTGCAGTAGGATGAAGAGTGGGCAAAGAGAGAGAT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACTTGTTGGGTTCCCTGCAGTAGGATGAAGAGTGGGCAAAGAGAGAGAT  200

seq1  TTTATAAAGCACGGGCAAGTGGAGAGGGGGCATTGGTCTGGAAGATGAAG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTATAAAGCACGGGCAAGTGGAGAGGGGGCATTGGTCTGGAAGATGAAG  250

seq1  TAGCGCTTCTGTTCTCAGGACTGTGTATGAAATATTAATAAGGGCCGTTG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGCGCTTCTGTTCTCAGGACTGTGTATGAAATATTAATAAGGGCCGTTG  300

seq1  TCTGGACATTCGTGTTGGGCAGTATGTGGGGGTGCTTCCTCGTCTCACAA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTGGACATTCGTGTTGGGCAGTATGTGGGGGTGCTTCCTCGTCTCACAA  350

seq1  TTATCTACGAGAACGCAAGAAGTGTCTCATTAGTCAGTGGACATTCACTC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTATCTACGAGAACGCAAGAAGTGTCTCATTAGTCAGTGGACATTCACTC  400

seq1  TCTTGGCTACTGATAAAAGTCTCTTGTATCAGATGGCCGGTTTTACTTGG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTTGGCTACTGATAAAAGTCTCTTGTATCAGATGGCCGGTTTTACTTGG  450

seq1  CTGAGTTTGGTCTCAAATGTCCAGTTCAAGAGGCCTGGGCAAGTGGTCTT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGAGTTTGGTCTCAAATGTCCAGTTCAAGAGGCCTGGGCAAGTGGTCTT  500

seq1  CTTAAATCCTCATTTGGACCCCAGGTTTTGTTTACGGCCAATTAAAATTC  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTAAATCCTCATTTGGACCCCAGGTTTTGTTTACGGCCAATTAAAATTC  550

seq1  CCTACAGAATGTCTTATTGGAGCCCTCGGACTTAGACGCACTCTGCAAAG  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTACAGAATGTCTTATTGGAGCCCTCGGACTTAGACGCACTCTGCAAAG  600

seq1  ACTGATGTCAGAGCCTTGGGTGGAAAGTCTCAGAGTACTGAAGGACAGTG  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTGATGTCAGAGCCTTGGGTGGAAAGTCTCAGAGTACTGAAGGACAGTG  650

seq1  CAGTAGATATTAAAACAGGAGGAAAGTGGTCATATTTACACAGACACAGC  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGTAGATATTAAAACAGGAGGAAAGTGGTCATATTTACACAGACACAGC  700

seq1  CTTCTTAGATGACCACTTCCTTCAGACATCTGACCCGCTGAAAACTCTCC  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTCTTAGATGACCACTTCCTTCAGACATCTGACCCGCTGAAAACTCTCC  750

seq1  TTCTGAAGGAAGAGAGCAGAATACAGGGCCTAAAATGGCGGCAGCGTAAA  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTGAAGGAAGAGAGCAGAATACAGGGCCTAAAATGGCGGCAGCGTAAA  800

seq1  AACTAATCCACGTTCTTGCCAGCCGCCGATTCAATTGGGTCCTTGAGGAC  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACTAATCCACGTTCTTGCCAGCCGCCGATTCAATTGGGTCCTTGAGGAC  850

seq1  ATTTCTAATTAACTGCCAGCCACAATTGTCTTGTTTGTATCCTGTTCGTT  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTCTAATTAACTGCCAGCCACAATTGTCTTGTTTGTATCCTGTTCGTT  900

seq1  CTGCACACCCCGCTGGTGCCCAAACTATGATTCTCTGGAACGAGCTACCC  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGCACACCCCGCTGGTGCCCAAACTATGATTCTCTGGAACGAGCTACCC  950

seq1  CTGACACATCCCTAATGATTCTGGCCGGCTTTTCTTGCAGATTTGCAACT  1000
      |||||||||||||||||||||||| |||||||   |||||||||||||||
seq2  CTGACACATCCCTAATGATTCTGG-CGGCTTT--CTGCAGATTTGCAACT  997

seq1  ATAAACAATAGAGGAATGCAATTAGGACGGCCCTTCTCCGAGCCCATCTT  1050
      |||||||||| | | |||| |||| ||||  || ||| |||| |||||||
seq2  ATAAACAATAAAAGGATGC-ATTA-GACG--CCCTCT-CGAG-CCATCTT  1041

seq1  TCCCTGATTTTGTAGGCCACCCTTCCTCCCGCAGGAGCAAGGGGCGAATG  1100
      ||||||| |||||||  || |||  |||||||| |||| |||||||||||
seq2  TCCCTGA-TTTGTAG--CAACCT--CTCCCGCA-GAGC-AGGGGCGAATG  1084

seq1  ACACTTAGTCCTGAATTGGTGAACTTTCTCTAGCTGTGCACCCTGAGCCC  1150
      | || |||| ||||    ||||  | ||| ||||||||||||||||  ||
seq2  A-AC-TAGT-CTGA---TGTGACTTCTCT-TAGCTGTGCACCCTGA--CC  1125

seq1  CTCAATTGGGTGTTTCAGCGATGGGATGTCAAAGAGTCATTGAGTGGCAG  1200
      |||| |   ||||||||  ||| ||  ||| |||| ||  ||| ||||||
seq2  CTCATT---GTGTTTCA--GATTGGGAGTC-AAGA-TC--TGA-TGGCAG  1165

seq1  GGAATAATGTTGCCTATTTGTCTTCTAACAGATGTAACTAGGTTAGACTC  1250
         |||| ||   ||||   | |||||  ||     |||  ||  |||||
seq2  ---ATAA-GT--GCTAT---TGTTCTACAAG----TACT--GT--GACTC  1198

seq1  CATAGTGACCTACTTAAGAGCTTTAGAAACAGTGGTTTTTGGGGTC  1296
       |   |||||   |  ||| |||  | ||||  |||||||||||||
seq2  TA---TGACC--ATATAGACCTT--GCAACA--GGTTTTTGGGGTC  1235

seq1: chr5_148636821_148637462
seq2: B6Ng01-063D01.g_66_707 (reverse)

seq1  CACACACACACACACACACACACACACACACACACTGAGCTTCATGAAGC  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACACACACACACACACACACACACACACACACACTGAGCTTCATGAAGC  50

seq1  TCAGAGTGAGAGGATTTCTCTGGCATCCAGCAGACCCACACAGATATTGT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAGAGTGAGAGGATTTCTCTGGCATCCAGCAGACCCACACAGATATTGT  100

seq1  CAGTCAGTTTCCCTTCTGGGCTTTGTTCTTTGGGTGCTGATTGCTCCTGA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGTCAGTTTCCCTTCTGGGCTTTGTTCTTTGGGTGCTGATTGCTCCTGA  150

seq1  TGCAACCTGATGGGCTCTGGGGCCCCAACGCTCCCACATCCTTTCCTGTT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCAACCTGATGGGCTCTGGGGCCCCAACGCTCCCACATCCTTTCCTGTT  200

seq1  AAAGGCATCAGCATCTTCACCGGGAATCCGGAAGGCAGATACACAGGCAG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAGGCATCAGCATCTTCACCGGGAATCCGGAAGGCAGATACACAGGCAG  250

seq1  GAAGGATATGTAGTCCCGGTGTGAAAGTTCTGTGTGATACTGTGAAGGCC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAGGATATGTAGTCCCGGTGTGAAAGTTCTGTGTGATACTGTGAAGGCC  300

seq1  TGGCCCCCACACCCGCCACTCTCCTTCCATGCGGGGGGCGGGGTTCATTC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGCCCCCACACCCGCCACTCTCCTTCCATGCGGGGGGCGGGGTTCATTC  350

seq1  ATGGCTTGGGCCTTCATGTCAGCTTTTAGCTCCCCGAGATTATGATTCGG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGGCTTGGGCCTTCATGTCAGCTTTTAGCTCCCCGAGATTATGATTCGG  400

seq1  GTCCTGGCCAAGCATTCAGCATCCTGCTGACAAGCGCGTCAGAGGCTCCC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCCTGGCCAAGCATTCAGCATCCTGCTGACAAGCGCGTCAGAGGCTCCC  450

seq1  TTACCCTGCTCACATCTTTGAGAAGACACGTGTTCTTATCGCCATGGGGA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTACCCTGCTCACATCTTTGAGAAGACACGTGTTCTTATCGCCATGGGGA  500

seq1  AGAGGCCTCCCTTTGGGCACCAAAGTGAGATCGCAGGATAAGGACCACTT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAGGCCTCCCTTTGGGCACCAAAGTGAGATCGCAGGATAAGGACCACTT  550

seq1  CCTGTTTCGTTCGCTTTGATTTCATCCCGAGAGACTCTCCAGAGGGAAGT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTGTTTCGTTCGCTTTGATTTCATCCCGAGAGACTCTCCAGAGGGAAGT  600

seq1  AGATAGAGACGGAGAGGCTGCTCAGTTCCTTCTGAAGAATTC  642
      ||||||||||||||||||||||||||||||||||||||||||
seq2  AGATAGAGACGGAGAGGCTGCTCAGTTCCTTCTGAAGAATTC  642