BAC Information

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BAC

Clone NameB6Ng01-063F02
Chromosome5 (Build37)
Map Location 145,494,680 - 145,689,083
singlet/doubletdoublet
Overlap geneTmem130, LOC100039427, Trrap, Smurf1
Upstream geneEif2ak1, 4921520G13Rik, Jtv1, Pms2, 4930526H21Rik, AU022870, Ocm, Lmtk2, Bhlhb8, 2210010N04Rik, Bri3, Baiap2l1, 4930568B11Rik, Nptx2, EG621967
Downstream geneAW146299, EG231885, EG666992, 1700018F24Rik, Arpc1a, Arpc1b, Pdap1, Bud31, Ptcd1, Cpsf4, Atp5j2, Zkscan14, Zkscan5, EG622116, Zfp655, LOC677270, EG666311, EG622127, LOC100039566, Cyp3a16, LOC100041375, LOC667065, Cyp3a41, Cyp3a44, Cyp3a11
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-063F02.bB6Ng01-063F02.g
ACCDH883449DH883450
length1,1151,081
definitionDH883449|Mus musculus domesticus DNA, BAC clone: B6Ng01-063F02, 5' end.DH883450|Mus musculus domesticus DNA, BAC clone: B6Ng01-063F02, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(145,494,680 - 145,495,806)(145,688,026 - 145,689,083)
sequence
gaattccacgtctttctcttttgctttctagggatgaaaaagccattcac
cctgccatgcatttcccaccatgggtctttggcatcccaccagagaccca
aagcaagactgcacaccagtcttggtctgaaatctccaaaagtcagtcaa
agaaacctttactcaatgttggatcctgtgaatttagattagtaacgaag
gttcaggcagttgttggagatttgaagggaatgaactgatttgggaagct
gcgtggctgcagacagacagcccaggctctctgtgaaagaagttcatccc
ctgccatactggccttctgtgacttcttgcaaaggctcatagcaccccct
gatgtccactactggaattgcactggaatttcatggagggattcaggggg
tgagatgtttggatatgtagaaagttccagctcagaggataggtttggga
tcgactggactctagttctgggcacagaagatgtgaggagtcaaagagca
agccaaacatagatgggctcatcgtgggctcagggcatagtctgagctgg
acacaaatacttggagtcatgtctatggaaagggtgtgttttatatcaac
ttgacaagttagaatcatctgagaagagggagccacattggaaaaaaatg
cctccataagatctggctgcaaacatgtctataaggtattttgttaatta
gtgattgataatggacggcccagctcattgtggtcctgggttttataaga
aagcacgctgagcaagccatggggagcaagccagtaggcagtatccctcc
acggcctctgcatcagctcctgcctccagatcctgcccttactgcttttg
atgatgaactgtgatgtggaactgtgagcaaaataaaccctttcctccca
agtagctcttgaccacggtgtttcatcacagcaataagcaaaccctaact
aagcagaaagtaacccacaccacccggtgggctttctgcgaaagcatctt
cagaaaagaaatgcagaataagatggaaacttggggttcataagaagaga
aggaagaagtcagatatctctgcccttgtgagcatctgggtacagaccgg
gaggcgaaaatccac
gaattctatctgtagaccaggctgccttgaacttacagagatctgcctgc
atctgccctccaccctcacccctggaatgctgggattaaagtgcaccatc
atacccagctctggttttctgtttcgtgaggtataagcttagacttgcga
tttatgacttttcttcttttccagcaaagacatttcatctttttctttct
cttataagggctgggcaacaagatagctcagcaggtaaaagtgtgtgctg
tgtgtgctgagttcaggcccttgtacaaagcagatgtggtggtgcacatc
tgtaactccagcatttctgtgctgagacagaaggcagaggaaggagagct
gccctacagctcaagggccagctagcctgaaacgtgcaggttgtcacaga
gttcatacctcataggtgaaaggagagctgcaagggccagctagcctgaa
acgtgcaggttgtcacagagttcacacctcacaggtggagggagagctgc
cctacagctcaagggccagctagcctgaaacatgcaggttgtcacagagt
tcacacctcacaggtggaaggagaagatggagctccaagagccggccaag
gattatttagaagtgtgatgtttaatgtccgagggttgaagagtttcctg
tcttctcgtgttgcttcctagtttaattccgtgaccagagaacatgcgct
gcagggttcagttttgtctgttgacatctccagctgctcttctgggtttt
cctgtttctcttgacgttctgtccattgtgttttgctttgtttattttga
ggatttaggtaccattatggatagaatgaaaatcctttggtgagctgatc
cgtttgttcatctttcccctcctcattttctttgccctgaggtctccctg
gtgtgtaggaatgtagctggtctagctttccatgattaatcatttacatg
tttcgcctttgtcttctcttgagctgagattgccatggctagtcattgga
tgtgtaccaccagggccttactctgcgtttctaaaagaatttttgctgca
tgaactatggtacatgtgctgcagacccagg
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr5_145494680_145495806
seq2: B6Ng01-063F02.b_44_1158

seq1  GAATTCCACGTCTTTCTCTTTTGCTTTCTAGGGATGAAAAAGCCATTCAC  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCCACGTCTTTCTCTTTTGCTTTCTAGGGATGAAAAAGCCATTCAC  50

seq1  CCTGCCATGCATTTCCCACCATGGGTCTTTGGCATCCCACCAGAGACCCA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTGCCATGCATTTCCCACCATGGGTCTTTGGCATCCCACCAGAGACCCA  100

seq1  AAGCAAGACTGCACACCAGTCTTGGTCTGAAATCTCCAAAAGTCAGTCAA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGCAAGACTGCACACCAGTCTTGGTCTGAAATCTCCAAAAGTCAGTCAA  150

seq1  AGAAACCTTTACTCAATGTTGGATCCTGTGAATTTAGATTAGTAACGAAG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAAACCTTTACTCAATGTTGGATCCTGTGAATTTAGATTAGTAACGAAG  200

seq1  GTTCAGGCAGTTGTTGGAGATTTGAAGGGAATGAACTGATTTGGGAAGCT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTCAGGCAGTTGTTGGAGATTTGAAGGGAATGAACTGATTTGGGAAGCT  250

seq1  GCGTGGCTGCAGACAGACAGCCCAGGCTCTCTGTGAAAGAAGTTCATCCC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCGTGGCTGCAGACAGACAGCCCAGGCTCTCTGTGAAAGAAGTTCATCCC  300

seq1  CTGCCATACTGGCCTTCTGTGACTTCTTGCAAAGGCTCATAGCACCCCCT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGCCATACTGGCCTTCTGTGACTTCTTGCAAAGGCTCATAGCACCCCCT  350

seq1  GATGTCCACTACTGGAATTGCACTGGAATTTCATGGAGGGATTCAGGGGG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATGTCCACTACTGGAATTGCACTGGAATTTCATGGAGGGATTCAGGGGG  400

seq1  TGAGATGTTTGGATATGTAGAAAGTTCCAGCTCAGAGGATAGGTTTGGGA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAGATGTTTGGATATGTAGAAAGTTCCAGCTCAGAGGATAGGTTTGGGA  450

seq1  TCGACTGGACTCTAGTTCTGGGCACAGAAGATGTGAGGAGTCAAAGAGCA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCGACTGGACTCTAGTTCTGGGCACAGAAGATGTGAGGAGTCAAAGAGCA  500

seq1  AGCCAAACATAGATGGGCTCATCGTGGGCTCAGGGCATAGTCTGAGCTGG  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCCAAACATAGATGGGCTCATCGTGGGCTCAGGGCATAGTCTGAGCTGG  550

seq1  ACACAAATACTTGGAGTCATGTCTATGGAAAGGGTGTGTTTTATATCAAC  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACACAAATACTTGGAGTCATGTCTATGGAAAGGGTGTGTTTTATATCAAC  600

seq1  TTGACAAGTTAGAATCATCTGAGAAGAGGGAGCCACATTGGAAAAAAATG  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGACAAGTTAGAATCATCTGAGAAGAGGGAGCCACATTGGAAAAAAATG  650

seq1  CCTCCATAAGATCTGGCTGCAAACATGTCTATAAGGTATTTTGTTAATTA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTCCATAAGATCTGGCTGCAAACATGTCTATAAGGTATTTTGTTAATTA  700

seq1  GTGATTGATAATGGACGGCCCAGCTCATTGTGGTCCTGGGTTTTATAAGA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGATTGATAATGGACGGCCCAGCTCATTGTGGTCCTGGGTTTTATAAGA  750

seq1  AAGCAGGCTGAGCAAGCCATGGGGAGCAAGCCAGTAGGCAGTATCCCTCC  800
      ||||| ||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGCACGCTGAGCAAGCCATGGGGAGCAAGCCAGTAGGCAGTATCCCTCC  800

seq1  ACGGCCTCTGCATCAGCTCCTGCCTCCAGATCCTGCCCTTACTGCTTTTG  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACGGCCTCTGCATCAGCTCCTGCCTCCAGATCCTGCCCTTACTGCTTTTG  850

seq1  ATGATGAACTGTGATGTGGAACTGTGAGCAAAATAAACCCTTTCCTCCCC  900
      |||||||||||||||||||||||||||||||||||||||||||||| |||
seq2  ATGATGAACTGTGATGTGGAACTGTGAGCAAAATAAACCCTTTCCT-CCC  899

seq1  AAGTAGCTCTTGACCACGGTGTTTCATCACAGCAATAAGCAAACCCTAAC  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGTAGCTCTTGACCACGGTGTTTCATCACAGCAATAAGCAAACCCTAAC  949

seq1  TAAGGCAGAAAGTAACCCACACCACCCGGTGGGCTTTCTGCGAAAGGCAT  1000
      ||| ||||||||||||||||||||||||||||||||||||||||| ||||
seq2  TAA-GCAGAAAGTAACCCACACCACCCGGTGGGCTTTCTGCGAAA-GCAT  997

seq1  CTTCCAGAAAAGAAAATGCAGAATAAAGATGGAAACTTGGGGTTCCATAA  1050
      ||| |||||||| ||||||||||| ||||||||||||||||||| |||||
seq2  CTT-CAGAAAAG-AAATGCAGAAT-AAGATGGAAACTTGGGGTT-CATAA  1043

seq1  GAAGAGAAAGAAAGAAGTCAGAATATCTCTGCCCCTTGTGAGCATCTGGG  1100
      |||||| ||| |||||||||| ||||||||| ||||||||||||||| ||
seq2  GAAGAG-AAGGAAGAAGTCAG-ATATCTCTG-CCCTTGTGAGCATCT-GG  1089

seq1  GTACAGACGGGGAGGCAGAAAACCCAC  1127
      |||||||| ||||||| ||||| ||||
seq2  GTACAGACCGGGAGGC-GAAAATCCAC  1115

seq1: chr5_145688026_145689083
seq2: B6Ng01-063F02.g_105_1149 (reverse)

seq1  CGTGGGTACTGCACGCACATGGTACACATAGATACATGCAGGCAAAATAT  50
      | ||||| ||||| |||||| |||| ||||| | |||||| ||||||  |
seq2  CCTGGGT-CTGCA-GCACAT-GTAC-CATAG-TTCATGCA-GCAAAAATT  44

seq1  CTTTTAGAAAACGGCAGAGTAGGGCCCTGGTTGGTACACATCATATGACT  100
      ||||||||||   |||||||| |||||||| |||||||||||  ||||||
seq2  CTTTTAGAAA--CGCAGAGTAAGGCCCTGG-TGGTACACATCCAATGACT  91

seq1  AGCCATGGCAATCTCAGCTCAAAGAGGAAGACAAAGGCGGAACATGTAAA  150
      |||||||||||||||||||| |||| ||||||||||||| ||||||||||
seq2  AGCCATGGCAATCTCAGCTC-AAGA-GAAGACAAAGGCGAAACATGTAAA  139

seq1  TGA-TAATCATGGAAAGGCTAGACCAGCTACATTCCTACACACCAGGGAG  199
      ||| |||||||||||| |||||||||||||||||||||||||||||||||
seq2  TGATTAATCATGGAAA-GCTAGACCAGCTACATTCCTACACACCAGGGAG  188

seq1  ACCTCAGGGCAAAGAAAATGAGGAGGGGGAAAGATGAACAAACGGATCAG  249
      |||||||||||||||||||||||| |||||||||||||||||||||||||
seq2  ACCTCAGGGCAAAGAAAATGAGGA-GGGGAAAGATGAACAAACGGATCAG  237

seq1  CTCACCAAAGGATTTTCAATTCTATCCATATTGGTACCTAAATCCTCAAA  299
      ||||||||||||||||| |||||||||||| |||||||||||||||||||
seq2  CTCACCAAAGGATTTTC-ATTCTATCCATAATGGTACCTAAATCCTCAAA  286

seq1  ATAAACAAAGCAAAACACAATGGACAGAACGTCAAGAGAAACAGGAAAAC  349
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAAACAAAGCAAAACACAATGGACAGAACGTCAAGAGAAACAGGAAAAC  336

seq1  CCAGAAGAGCAGCTGGAGATGTCAACAGACAAAACTGAACCCTGCAGCGC  399
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAGAAGAGCAGCTGGAGATGTCAACAGACAAAACTGAACCCTGCAGCGC  386

seq1  ATGTTCTCTGGTCACGGAATTAAACTAGGAAGCAACACGAGAAGACAGGA  449
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGTTCTCTGGTCACGGAATTAAACTAGGAAGCAACACGAGAAGACAGGA  436

seq1  AACTCTTCAACCCTCGGACATTAAACATCACACTTCTAAATAATCCTTGG  499
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACTCTTCAACCCTCGGACATTAAACATCACACTTCTAAATAATCCTTGG  486

seq1  CCGGCTCTTGGAGCTCCATCTTCTCCTTCCACCTGTGAGGTGTGAACTCT  549
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCGGCTCTTGGAGCTCCATCTTCTCCTTCCACCTGTGAGGTGTGAACTCT  536

seq1  GTGACAACCTGCATGTTTCAGGCTAGCTGGCCCTTGAGCTGTAGGGCAGC  599
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGACAACCTGCATGTTTCAGGCTAGCTGGCCCTTGAGCTGTAGGGCAGC  586

seq1  TCTCCCTCCACCTGTGAGGTGTGAACTCTGTGACAACCTGCACGTTTCAG  649
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTCCCTCCACCTGTGAGGTGTGAACTCTGTGACAACCTGCACGTTTCAG  636

seq1  GCTAGCTGGCCCTTGCAGCTCTCCTTTCACCTATGAGGTATGAACTCTGT  699
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTAGCTGGCCCTTGCAGCTCTCCTTTCACCTATGAGGTATGAACTCTGT  686

seq1  GACAACCTGCACGTTTCAGGCTAGCTGGCCCTTGAGCTGTAGGGCAGCTC  749
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACAACCTGCACGTTTCAGGCTAGCTGGCCCTTGAGCTGTAGGGCAGCTC  736

seq1  TCCTTCCTCTGCCTTCTGTCTCAGCACAGAAATGCTGGAGTTACAGATGT  799
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCTTCCTCTGCCTTCTGTCTCAGCACAGAAATGCTGGAGTTACAGATGT  786

seq1  GCACCACCACATCTGCTTTGTACAAGGGCCTGAACTCAGCACACACAGCA  849
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCACCACCACATCTGCTTTGTACAAGGGCCTGAACTCAGCACACACAGCA  836

seq1  CACACTTTTACCTGCTGAGCTATCTTGTTGCCCAGCCCTTATAAGAGAAA  899
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACACTTTTACCTGCTGAGCTATCTTGTTGCCCAGCCCTTATAAGAGAAA  886

seq1  GAAAAAGATGAAATGTCTTTGCTGGAAAAGAAGAAAAGTCATAAATCGCA  949
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAAAAGATGAAATGTCTTTGCTGGAAAAGAAGAAAAGTCATAAATCGCA  936

seq1  AGTCTAAGCTTATACCTCACGAAACAGAAAACCAGAGCTGGGTATGATGG  999
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTCTAAGCTTATACCTCACGAAACAGAAAACCAGAGCTGGGTATGATGG  986

seq1  TGCACTTTAATCCCAGCATTCCAGGGGTGAGGGTGGAGGGCAGATGCAGG  1049
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCACTTTAATCCCAGCATTCCAGGGGTGAGGGTGGAGGGCAGATGCAGG  1036

seq1  CAGATCTCT  1058
      |||||||||
seq2  CAGATCTCT  1045