BAC Information

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BAC

Clone NameB6Ng01-063G10
ChromosomeY (Build37)5 (Build37)
Map Location 1,870,535 - 1,870,64814,136,710 - 14,137,769
singlet/doubletsingletsinglet
Overlap genenone
Upstream geneLOC100039278, EG667079, LOC667089, Rhoay-ps1, Zfy2, Ube1y1-ps2, LOC667137, LOC100039373, LOC100039381, LOC667143, LOC100039401, LOC100039430, Vmn2r-ps137, LOC100039450, LOC547210
Downstream geneUbe1y1-ps1, Sry, LOC100042840, LOC100042849, LOC620228, LOC667181, Rbmy1a1, LOC667189, LOC100042874, LOC667194, LOC100042881, LOC667201, LOC100039546, Rhoay-ps2, LOC100039568, LOC100041505, LOC100039581, LOC676356, LOC667217, LOC100039613, LOC100041537, LOC667227, LOC667236, EG631479, LOC667244, LOC100039652
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-063G10.bB6Ng01-063G10.g
ACCDH883511DH883512
length1471,047
definitionDH883511|Mus musculus domesticus DNA, BAC clone: B6Ng01-063G10, 5' end.DH883512|Mus musculus domesticus DNA, BAC clone: B6Ng01-063G10, 3' end.
singlet/doubletsingletsinglet
BLAST hituniqueunique
Map location.(1,870,535 - 1,870,648)(14,136,710 - 14,137,769)
sequence
cagggccaaaaagggggagtgggtgggcaggggagtgggggtgggtggat
atgggggacttttggtatagcattggaaatgtaaatgagttaaataccta
ataaaaaatggaaaaaaattcaggtgacagcagatgctggcgtggat
gaattctttttgttttctttttaattatatcaaatcaaaatgttaagaaa
ttataggagagcttccattttaacttgtattctctatgaggctgtgccaa
aaacaaaaattacgttactgatacagtataatttcattatcaactagact
ctttttaggtttatttatttattgtgttttatgtatatgggtgctatgcc
tgcatttctgtgtgcatatccaaagagagcattaggttccgttatagata
gttttgagctgctatgtgcgtgctggttactgaactcaggaatccttgaa
gaacagccactgctcttaactcatgagctctcttccaggtctccaccccc
tttgaaatcatttatttatttttattttatgtgcactggtgttttgcttg
catgtatgtctgggtgaaggtttgggcctcttggaactggagttacagac
agttagaagtcaccatgcgggttctgggaattccacctaggtcctctgga
agaatagtcaatgctcttagccactaagacatctctccatcctcgaccaa
actttctttttcttttctttttttttctttctatttttatttttattttt
attttggttttttgagacagggtttctctgtctagctctggctgtcctgg
aactcactgtgtagaccaggctggccttgaactcagaaatccacctgcct
ctgcctcccaagtgctcggattaaaggtgtgagccaccacgcccggctca
gaatttcttataataaattgtaaaatatgcatttattttatcactcatca
aatcattattataaagagaaaacttgtaataaatccagcaattgttttac
ttttggtattgggaacagaggagagactgggttgtctgagatcccattga
tgatttcatttggagtctaaaatttgtattaaacattttctttatatatt
gagcacatatttctccctcgcctttgtcatcaaacccatatactcctctg
actttttcgattactttttgctttgattgatgataaatacatacatt
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chrY_1870535_1870648
seq2: B6Ng01-063G10.b_54_168

seq1  CAGGGCCAAAAAGGGGCAGTGGGTGGGTAGGGGAGTGGGGGTGGGTGGCT  50
      |||||||||||||||| |||||||||| |||||||||||||||||||| |
seq2  CAGGGCCAAAAAGGGGGAGTGGGTGGGCAGGGGAGTGGGGGTGGGTGGAT  50

seq1  ATGGGGGACTTTTGGTATAGCATTGGAAATGTAAATGAGCTAAATACCTT  100
      ||||||||||||||||||||||||||||||||||||||| ||||||||| 
seq2  ATGGGGGACTTTTGGTATAGCATTGGAAATGTAAATGAGTTAAATACCTA  100

seq1  A-AAAAAATGGAAAA  114
      | |||||||||||||
seq2  ATAAAAAATGGAAAA  115

seq1: chr5_14136710_14137769
seq2: B6Ng01-063G10.g_72_1118

seq1  GAATTCTTTTTGTTTTCTTTTTAATTATATCAAATCAAAATGTTAAGAAA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTTTTTGTTTTCTTTTTAATTATATCAAATCAAAATGTTAAGAAA  50

seq1  TTATAGGAGAGCTTCCATTTTAACTTGTATTCTCTATGAGGCTGTGCCAA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTATAGGAGAGCTTCCATTTTAACTTGTATTCTCTATGAGGCTGTGCCAA  100

seq1  AAACAAAAATTACGTTACTGATACAGTATAATTTCATTATCAACTAGACT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAACAAAAATTACGTTACTGATACAGTATAATTTCATTATCAACTAGACT  150

seq1  CTTTTTAGGTTTATTTATTTATTGTGTTTTATGTATATGGGTGCTATGCC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTTTTAGGTTTATTTATTTATTGTGTTTTATGTATATGGGTGCTATGCC  200

seq1  TGCATTTCTGTGTGCATATCCAAAGAGAGCATTAGGTTCCGTTATAGATA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCATTTCTGTGTGCATATCCAAAGAGAGCATTAGGTTCCGTTATAGATA  250

seq1  GTTTTGAGCTGCTATGTGCGTGCTGGTTACTGAACTCAGGAATCCTTGAA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTTTGAGCTGCTATGTGCGTGCTGGTTACTGAACTCAGGAATCCTTGAA  300

seq1  GAACAGCCACTGCTCTTAACTCATGAGCTCTCTTCCAGGTCTCCACCCCC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAACAGCCACTGCTCTTAACTCATGAGCTCTCTTCCAGGTCTCCACCCCC  350

seq1  TTTGAAATCATTTATTTATTTTTATTTTATGTGCACTGGTGTTTTGCTTG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTGAAATCATTTATTTATTTTTATTTTATGTGCACTGGTGTTTTGCTTG  400

seq1  CATGTATGTCTGGGTGAAGGTTTGGGCCTCTTGGAACTGGAGTTACAGAC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATGTATGTCTGGGTGAAGGTTTGGGCCTCTTGGAACTGGAGTTACAGAC  450

seq1  AGTTAGAAGTCACCATGCGGGTTCTGGGAATTCCACCTAGGTCCTCTGGA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTTAGAAGTCACCATGCGGGTTCTGGGAATTCCACCTAGGTCCTCTGGA  500

seq1  AGAATAGTCAATGCTCTTAGCCACTAAGACATCTCTCCATCCTCGACCAA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAATAGTCAATGCTCTTAGCCACTAAGACATCTCTCCATCCTCGACCAA  550

seq1  ACTTTCTTTTTCTTTTCTTTTTTTTTCTTTCTATTTTTATTTTTATTTTT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTTTCTTTTTCTTTTCTTTTTTTTTCTTTCTATTTTTATTTTTATTTTT  600

seq1  ATTTTGGTTTTTTGAGACAGGGTTTCTCTGTCTAGCTCTGGCTGTCCTGG  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTTGGTTTTTTGAGACAGGGTTTCTCTGTCTAGCTCTGGCTGTCCTGG  650

seq1  AACTCACTGTGTAGACCAGGCTGGCCTTGAACTCAGAAATCCACCTGCCT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACTCACTGTGTAGACCAGGCTGGCCTTGAACTCAGAAATCCACCTGCCT  700

seq1  CTGCCTCCCAAGTGCTCGGATTAAAGGTGTGAGCCACCACGCCCGGCTCA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGCCTCCCAAGTGCTCGGATTAAAGGTGTGAGCCACCACGCCCGGCTCA  750

seq1  GAATTTCTTATAATAAATTGTAAAATATGCATTTATTTTATCACTCATCA  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTTCTTATAATAAATTGTAAAATATGCATTTATTTTATCACTCATCA  800

seq1  AATCATTATTAATAAAGAGAAAACTTGTAATAAATCCAGCAATTGTTTTA  850
      |||||||||| |||||||||||||||||||||||||||||||||||||||
seq2  AATCATTATT-ATAAAGAGAAAACTTGTAATAAATCCAGCAATTGTTTTA  849

seq1  CTTTTGGTATTGGGAACAGAGGAGAGACTGGGTTGTCTGAGATCACATTG  900
      |||||||||||||||||||||||||||||||||||||||||||| |||||
seq2  CTTTTGGTATTGGGAACAGAGGAGAGACTGGGTTGTCTGAGATCCCATTG  899

seq1  ATGATTTCATTTGGAGTCTTAAAATTTGTATTTAAAACATTTTCTTTATA  950
      |||||||||||||||||| |||||||||||||  ||||||||||||||||
seq2  ATGATTTCATTTGGAGTC-TAAAATTTGTATT--AAACATTTTCTTTATA  946

seq1  TTATGAGCACATTATTTTCTCCCTCGCCTTTGTCATCAAACCCCAATATA  1000
      |  |||||||||   ||||||||||||||||||||||||||||  |||||
seq2  TATTGAGCACAT--ATTTCTCCCTCGCCTTTGTCATCAAACCC--ATATA  992

seq1  CTCCTCCTGACTTTTTTTCAGATTTACTTTTTGCTTTGATTGATGATAAA  1050
      ||||| ||||||||||    || |||||||||||||||||||||||||||
seq2  CTCCT-CTGACTTTTT---CGA-TTACTTTTTGCTTTGATTGATGATAAA  1037

seq1  TACATACATT  1060
      ||||||||||
seq2  TACATACATT  1047