BAC Information

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BAC

Clone NameB6Ng01-063J22
Chromosome5 (Build37)
Map Location 14,211,987 - 14,213,116
singlet/doubletsinglet
Overlap geneSema3e
Upstream geneSema3a, LOC208055, LOC626053, Speer3, EG626067, LOC668085, LOC384149, LOC384148, LOC100042957
Downstream genePclo, ENSMUSG00000033219, LOC624245, Speer8-ps1, Speer4c, Speer4d, 4930572O03Rik, Speer7-ps1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-063J22.bB6Ng01-063J22.g
ACCDH883657DH883658
length1,2291,117
definitionDH883657|Mus musculus domesticus DNA, BAC clone: B6Ng01-063J22, 5' end.DH883658|Mus musculus domesticus DNA, BAC clone: B6Ng01-063J22, 3' end.
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
gaattcatgtgtacagctgcacttctgtgtcctgaagacactaattcttt
aaagtcatctactgattctggttcatactcttcttgttctcctccttcca
gaacaacaccaaatcttgagaggcaagggtgtagtgtatatgctccattt
aagaatgaccattctgtagtcttttattctcttggacctttgttagtctc
tgtgtggttcagtaaatactgcaaatagaagcttctcatgctacagttga
gagatgcattgatctacaataatcaatggtcagtagactgtttaactctg
tattcctttatcagaagaaagtagtaggttctatgactgtcctaggtcct
atgacttgtttagccatgagtatgttggtccaatacttgtgtcaggtatg
ggtttcataaaaagatttaaagggaattaatgggacatggggtgttaaat
ttgcttggcggagtgggagctagagtagaggttagagtatgtggagggat
aaacaaaactaaataccttctgaaaaaaatcacattgaaacttgctgtta
taaaagcttctcttacacgcgttctcgcgaccggccaggaaagacgcaac
aaaccggaatcttctgcggcaaagctttattgcttacatcttcaggagcc
agagagaaagagagcaagagagcaagagagcaagagagcaagagagcaag
agagcaagagagcaagagagcaaaagagcaagagagcaagagagcaagag
agcaagagagcaagagagagagaatggcgaaaccccgtcccttttaagag
aattatcctccgcctaggacgtgtcactccctgattggctgcagcccatc
ggccgagttgtcgtcacaggaaagcagagcacatggagtggagaactacc
cttggcacatgcacagattatttgtttaccacttagacacagatgtcagt
gccatcttgcacggcgatgtgaggcgctcctacatatccccttctttata
gagcatagcaccatatatgagagtgagatgaggtcaatcccagtggcagt
agagcgtaccaaactcttccagctacaccgaagggtctggttgtcggtcc
ttcctggagactggaacctcactcttgaagtctgttctgaatgtccttat
ggcgacctctctacgaggcttaactggcactctcggtctgtgaacaccaa
tatcctgctatagtaatcgacgctcttga
gaattcctatatctaaaatggatggaagtaattcctgatacctaacaagt
cagctaagagttcttagaatggagagactctgagggtccctatgaacaag
atgctattattacattttcattgtatattttcagtcatttctcatgacca
tcagtgctcatttctcttggaaaaaaatgagaaactgtaagttgtagaga
catcatattctaagaaaactgataaaacttggaataatttgctgatgttt
aaaaatatactctgaagggctggagaaatggcttgttgtttaaagacact
ggttgcccttgcagagctctgaggttcaaatctcagcactgacacagtgt
ctcacaaccttctctaatgctagtcccagggactctgatgtcctcttctg
accccacatatacacagacacacatgcaaacaaaacacccatacaataac
aatcaagattaaaaatataaaattaaaatatgctatacttgattcacact
gtacgctggaaaccctgtttacttcaagtgttccaagacttgataagctc
tgtattctgctcactacacttttctatctggatcattgttctcagaccaa
caagaaaaattttgtagagaaataaaatctttattagtcagaagctatgg
cattaacattataattaaaatattctaaaatatgaatttcatgtagtaag
ttgagacttgactatgtatttttaaaatgtacaatttaaaaatgtttatt
taaaaatattttatctcttttataaatttgtacacaaaatgtggtgtgtg
tgtgtgcgtttatgtagagcatgaagagaccttaaatataaaaacagtgc
tgttaagaaaagcttagacagtagtaatcacacattagggaatggcattc
ttgttgatactatatcatatttgctagacattccacaggaactggcagga
tctgagtgaaatgcttacatttgataaactgaatgtctggatggaataca
gactgagaaactttggcaaacagaaaacagtttgagattttcttcttata
aaaaagattggaggtgaaattacacacgtacgttctttacaggaatcctc
aagtttggagtgaagac
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr5_14211987_14213116
seq2: B6Ng01-063J22.g_68_1184

seq1  GAATTCCTATATCTAAAATGGATGGAAGTAATTCCTGATACCTAACAAGT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCCTATATCTAAAATGGATGGAAGTAATTCCTGATACCTAACAAGT  50

seq1  CAGCTAAGAGTTCTTAGAATGGAGAGACTCTGAGGGTCCCTATGAACAAG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGCTAAGAGTTCTTAGAATGGAGAGACTCTGAGGGTCCCTATGAACAAG  100

seq1  ATGCTATTATTACATTTTCATTGTATATTTTCAGTCATTTCTCATGACCA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGCTATTATTACATTTTCATTGTATATTTTCAGTCATTTCTCATGACCA  150

seq1  TCAGTGCTCATTTCTCTTGGAAAAAAATGAGAAACTGTAAGTTGTAGAGA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAGTGCTCATTTCTCTTGGAAAAAAATGAGAAACTGTAAGTTGTAGAGA  200

seq1  CATCATATTCTAAGAAAACTGATAAAACTTGGAATAATTTGCTGATGTTT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATCATATTCTAAGAAAACTGATAAAACTTGGAATAATTTGCTGATGTTT  250

seq1  AAAAATATACTCTGAAGGGCTGGAGAAATGGCTTGTTGTTTAAAGACACT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAAATATACTCTGAAGGGCTGGAGAAATGGCTTGTTGTTTAAAGACACT  300

seq1  GGTTGCCCTTGCAGAGCTCTGAGGTTCAAATCTCAGCACTGACACAGTGT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTTGCCCTTGCAGAGCTCTGAGGTTCAAATCTCAGCACTGACACAGTGT  350

seq1  CTCACAACCTTCTCTAATGCTAGTCCCAGGGACTCTGATGTCCTCTTCTG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCACAACCTTCTCTAATGCTAGTCCCAGGGACTCTGATGTCCTCTTCTG  400

seq1  ACCCCACATATACACAGACACACATGCAAACAAAACACCCATACAATAAC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCCCACATATACACAGACACACATGCAAACAAAACACCCATACAATAAC  450

seq1  AATCAAGATTAAAAATATAAAATTAAAATATGCTATACTTGATTCACACT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATCAAGATTAAAAATATAAAATTAAAATATGCTATACTTGATTCACACT  500

seq1  GTACGCTGGAAACCCTGTTTACTTCAAGTGTTCCAAGACTTGATAAGCTC  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTACGCTGGAAACCCTGTTTACTTCAAGTGTTCCAAGACTTGATAAGCTC  550

seq1  TGTATTCTGCTCACTACACTTTTCTATCTGGATCATTGTTCTCAGACCAA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTATTCTGCTCACTACACTTTTCTATCTGGATCATTGTTCTCAGACCAA  600

seq1  CAAGAAAAATTTTGTAGAGAAATAAAATCTTTATTAGTCAGAAGCTATGG  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAGAAAAATTTTGTAGAGAAATAAAATCTTTATTAGTCAGAAGCTATGG  650

seq1  CATTAACATTATAATTAAAATATTCTAAAATATGAATTTCATGTAGTAAG  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATTAACATTATAATTAAAATATTCTAAAATATGAATTTCATGTAGTAAG  700

seq1  TTGAGACTTGACTATGTATTTTTAAAATGTACAATTTAAAAATGTTTATT  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGAGACTTGACTATGTATTTTTAAAATGTACAATTTAAAAATGTTTATT  750

seq1  TAAAAATATTTTATCTCTTTTATAAATTTGTACACAAAATGTGGTGTGTG  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAAAATATTTTATCTCTTTTATAAATTTGTACACAAAATGTGGTGTGTG  800

seq1  TGTGTGCGTTTATGTAGAGCATGAAGAGACCTTAAATATAAAAACAGTGC  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTGTGCGTTTATGTAGAGCATGAAGAGACCTTAAATATAAAAACAGTGC  850

seq1  TGTTAAG-ACAGCTTAGACAGTAGTAATCACAACATTA-GGAATGGCATT  898
      ||||||| | ||||||||||||||||||||| |||||| |||||||||||
seq2  TGTTAAGAAAAGCTTAGACAGTAGTAATCAC-ACATTAGGGAATGGCATT  899

seq1  CTTGTTGAATACTATATCCATATTTGCTAGACATTCCACAGGAACTGGCA  948
      ||||||| ||||||||| ||||||||||||||||||||||||||||||||
seq2  CTTGTTG-ATACTATAT-CATATTTGCTAGACATTCCACAGGAACTGGCA  947

seq1  GGATCTGAGTGAAAATGCTTACATTTGATAAACTGAATGTCTGGATGGAA  998
      ||||||||||| ||||||||||||||||||||||||||||||||||||||
seq2  GGATCTGAGTG-AAATGCTTACATTTGATAAACTGAATGTCTGGATGGAA  996

seq1  TACAGACTGAGAAACTTTGGCAAACAGAAAACAAGTTTTGAGATATTTCT  1048
      |||||||||||||||||||||||||||||||||   |||||||| ||  |
seq2  TACAGACTGAGAAACTTTGGCAAACAGAAAACA--GTTTGAGATTTTCTT  1044

seq1  CTTATTAAAAAGATTTGAGGTTGGATATTACACACCGTACGTTCCTATAC  1098
      ||||| ||||||||| |||||  || |||||||| |||||||| || |||
seq2  CTTATAAAAAAGATTGGAGGT--GAAATTACACA-CGTACGTT-CTTTAC  1090

seq1  AGTGAAATCCTCAAGTGTTTGGAAGTGAAGAC  1130
      |  | |||||||||  |||||| |||||||||
seq2  A--GGAATCCTCAA--GTTTGG-AGTGAAGAC  1117