BAC Information

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BAC

Clone NameB6Ng01-063M17
Chromosome5 (Build37)
Map Location 43,991,457 - 44,152,109
singlet/doubletdoublet
Overlap geneC1qtnf7, 5730509K17Rik, Fbxl5
Upstream geneLOC433883, EG665934, Cpeb2, 4833430A08Rik
Downstream geneBst1, Cd38, EG665989, EG665994, LOC100040677, EG384179, Fgfbp1, Prom1, LOC100041413, Tapt1, LOC100040717, LOC545747, Ldb2, LOC100041481
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-063M17.bB6Ng01-063M17.g
ACCDH883778DH883779
length1,158907
definitionDH883778|Mus musculus domesticus DNA, BAC clone: B6Ng01-063M17, 5' end.DH883779|Mus musculus domesticus DNA, BAC clone: B6Ng01-063M17, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(44,150,933 - 44,152,109)(43,991,457 - 43,992,364)
sequence
gaattcattttacagaagagtctgcagaggaatcggttgctatcagcatt
gcacaaatggaaaaacgtgtactccatggcttaattcataatgttctgcc
atatgttggtacctctgtaaaaactttagtgttagcgtacagctctgcag
tctccagcaaaatggtatgtacaaatgaacactagctcgagtattaagga
aaatagcagtgagacaactttagtttacttattaatgtttaagagggaaa
aaatagtgtcttcccatggataggagtacactgttcgcattcatataatt
tcatttcttagggtattctatgtagcatagaaatcttgcctgtgttatag
ataagggaactaaaactaggcagctaagcgtttacttggctttatagatg
ttacgtggtgagtcttaattctatagagttgattataacatgtaaggcat
aggaagatgcacaagtgagataattagttttataaaattatgacttccta
catataatctccttgagtattcctttaaaagggtgatttttctgggtcta
atttctaagaaactttaagaagattactagaaatatgggcccagggattg
gagaggtaaaagttcatttggtaaagtgccttttgtgcaagtgtgagacc
ctggatccccagaatgtagatatatgtataatggcatgtatttgtaacca
tagtgctgggaccaggagaaatgggtgcagagacaggcagatacctggtg
cttactgtgcagttacactagcagaacctatggtttagagttcagcgaga
gattgtggctcaaattagatggagggagacacactggcttaacttcaggc
tccacacacacctcaccaaacagaatttgagcacagagtgtaactatttt
agtgcattgttggagtgattttttttttttctttcagtatgcatgtagac
taaggaaaaaccacggtgttatatttatcattgttgcttctactgaagtt
ccacaggtcctcaaggtggatttcctttccttcttaggtaggcagattag
agctttgtctaacctggaacatctggatcttaccagaccgacattcggat
tctgctttgacaggtaattattttaattcctaaattagtgatataaaaaa
acaaagcc
gaattctaggacaatcagagctacatagtgagacttcatctcaaattaaa
aaagagaagatggtagggagaaaaagaaagagaaaaaaagaaagaaagga
gaaaaacgaatgaacgagtgaacaaaggaacaagatggaaaagaacacac
atccccagttactggtcaacagattaggtcaaattccccagcagagatta
ttctactctatgggcagcaagaaaagtccatcaaagtcattatatgttta
aaaaaaaaaactaaaaatagaccttgtttagatttatagcattgactttt
acacactctctctcacacacacacacaatcagttcctatgtctttgggtt
cctcctttttccaagtgaaaaggatgtgactgcctaacctaggtatacta
gctgtctccctcagtggagaagatgagaaaaacatcttggggtacttttc
cattataggatcccctccctgatgcctaaaatacttgtagctacacttaa
aagggttttgctttgggatttttgtttgtttggtttttttgggttttttg
tttgtttgtttgtttgtttttgtttttagaaaaagaaaaatgagaagaaa
aaaaaactagtaattaattaagaggctgggccacctaaaattaagcttgt
ctgtagctgacactcaatgcactttataagtacatattaaggactataag
aaaaacttaccaatagctaagaacaaccactttatttgaggatgagaagt
aaaacatcggcaccctctatgactagaattctacactgatctagaaaatg
aaatacctgcctggaggtttatgatttgcacatgctacgatgctattcca
gttttgaaagtcaccaaatttaaaggatccttggtcaaatctgtgatcag
tgttcac
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr5_44150933_44152109
seq2: B6Ng01-063M17.b_49_1206 (reverse)

seq1  GGCTTTGTTTTATTTTATTTACTATATTTAGATATTTAAAATAATTAACC  50
      ||||||||||| || || | |||| ||||||  | ||||||||||| |||
seq2  GGCTTTGTTTTTTTATA-TCACTA-ATTTAG-GAATTAAAATAATT-ACC  46

seq1  TGTCAAATGCAGAATCAGAAATGTCGGTCTGGGTAAGATCCAGATGTTCC  100
      ||||||| |||||||| | ||||||||||| |||||||||||||||||||
seq2  TGTCAAA-GCAGAATCCG-AATGTCGGTCT-GGTAAGATCCAGATGTTCC  93

seq1  AGGTTAGGACAAAGCTCTAAAATCTGCCTAACCTAAGAAGGAAAGGAAAT  150
      |||||| |||||||||||  ||||||||| ||||||||||||||||||||
seq2  AGGTTA-GACAAAGCTCT--AATCTGCCT-ACCTAAGAAGGAAAGGAAAT  139

seq1  CCACTGTGAGGACCTGTGGGAACTTCAGTTAGAAAAGCAACAATGATAAA  200
      ||||  ||||||||||| |||||||||||   | ||||||||||||||||
seq2  CCACCTTGAGGACCTGT-GGAACTTCAGT---AGAAGCAACAATGATAAA  185

seq1  TATAACACCGTGGTTTTTTCCTAAGTCTACATGCATACTGAAAGAAAAAA  250
      ||||||||||||| |||||||| |||||||||||||||||||||||||||
seq2  TATAACACCGTGG-TTTTTCCTTAGTCTACATGCATACTGAAAGAAAAAA  234

seq1  AAAAAATCACTCCAACAATGCACTAAAATAGTTACACTCTGTGCTCAAAT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAAAATCACTCCAACAATGCACTAAAATAGTTACACTCTGTGCTCAAAT  284

seq1  TCTGTTTTGGTGAGGTGTGTGTGGAGGCCTGAAGTTAAGCCAGTGTGTCT  350
      |||| |||||||||||||||||||| ||||||||||||||||||||||||
seq2  TCTG-TTTGGTGAGGTGTGTGTGGA-GCCTGAAGTTAAGCCAGTGTGTCT  332

seq1  CCCTCCATCTAATTTTGAGCCACAATCTCTCGCTGAACTCTAAACCATAG  400
      |||||||||||| |||||||||||||||||||||||||||||||||||||
seq2  CCCTCCATCTAA-TTTGAGCCACAATCTCTCGCTGAACTCTAAACCATAG  381

seq1  GTTCTGCTAGTGTAACTGCACAGTAAGCACCAGGTATCTGCCTGTCTCTG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTCTGCTAGTGTAACTGCACAGTAAGCACCAGGTATCTGCCTGTCTCTG  431

seq1  CACCCATTTCTCCTGGTCCCAGCACTATGGTTACAAATACATGCCATTAT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACCCATTTCTCCTGGTCCCAGCACTATGGTTACAAATACATGCCATTAT  481

seq1  ACATATATCTACATTCTGGGGATCCAGGGTCTCACACTTGCACAAAAGGC  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACATATATCTACATTCTGGGGATCCAGGGTCTCACACTTGCACAAAAGGC  531

seq1  ACTTTACCAAATGAACTTTTACCTCTCCAATCCCTGGGCCCATATTTCTA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTTTACCAAATGAACTTTTACCTCTCCAATCCCTGGGCCCATATTTCTA  581

seq1  GTAATCTTCTTAAAGTTTCTTAGAAATTAGACCCAGAAAAATCACCCTTT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTAATCTTCTTAAAGTTTCTTAGAAATTAGACCCAGAAAAATCACCCTTT  631

seq1  TAAAGGAATACTCAAGGAGATTATATGTAGGAAGTCATAATTTTATAAAA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAAGGAATACTCAAGGAGATTATATGTAGGAAGTCATAATTTTATAAAA  681

seq1  CTAATTATCTCACTTGTGCATCTTCCTATGCCTTACATGTTATAATCAAC  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTAATTATCTCACTTGTGCATCTTCCTATGCCTTACATGTTATAATCAAC  731

seq1  TCTATAGAATTAAGACTCACCACGTAACATCTATAAAGCCAAGTAAACGC  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTATAGAATTAAGACTCACCACGTAACATCTATAAAGCCAAGTAAACGC  781

seq1  TTAGCTGCCTAGTTTTAGTTCCCTTATCTATAACACAGGCAAGATTTCTA  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAGCTGCCTAGTTTTAGTTCCCTTATCTATAACACAGGCAAGATTTCTA  831

seq1  TGCTACATAGAATACCCTAAGAAATGAAATTATATGAATGCGAACAGTGT  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCTACATAGAATACCCTAAGAAATGAAATTATATGAATGCGAACAGTGT  881

seq1  ACTCCTATCCATGGGAAGACACTATTTTTTCCCTCTTAAACATTAATAAG  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTCCTATCCATGGGAAGACACTATTTTTTCCCTCTTAAACATTAATAAG  931

seq1  TAAACTAAAGTTGTCTCACTGCTATTTTCCTTAATACTCGAGCTAGTGTT  1000
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAACTAAAGTTGTCTCACTGCTATTTTCCTTAATACTCGAGCTAGTGTT  981

seq1  CATTTGTACATACCATTTTGCTGGAGACTGCAGAGCTGTACGCTAACACT  1050
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATTTGTACATACCATTTTGCTGGAGACTGCAGAGCTGTACGCTAACACT  1031

seq1  AAAGTTTTTACAGAGGTACCAACATATGGCAGAACATTATGAATTAAGCC  1100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAGTTTTTACAGAGGTACCAACATATGGCAGAACATTATGAATTAAGCC  1081

seq1  ATGGAGTACACGTTTTTCCATTTGTGCAATGCTGATAGCAACCGATTCCT  1150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGGAGTACACGTTTTTCCATTTGTGCAATGCTGATAGCAACCGATTCCT  1131

seq1  CTGCAGACTCTTCTGTAAAATGAATTC  1177
      |||||||||||||||||||||||||||
seq2  CTGCAGACTCTTCTGTAAAATGAATTC  1158

seq1: chr5_43991457_43992364
seq2: B6Ng01-063M17.g_72_978

seq1  GAATTCTAGGACAATCAGAGCTACATAGTGAGACTTCATCTCAAATTAAA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTAGGACAATCAGAGCTACATAGTGAGACTTCATCTCAAATTAAA  50

seq1  AAAGAGAAGATGGTAGGGAGAAAAAGAAAGAGAAAAAAAGAAAGAAAGGA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAGAGAAGATGGTAGGGAGAAAAAGAAAGAGAAAAAAAGAAAGAAAGGA  100

seq1  GAAAAACGAATGAACGAGTGAACAAAGGAACAAGATGGAAAAGAACACAC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAAAACGAATGAACGAGTGAACAAAGGAACAAGATGGAAAAGAACACAC  150

seq1  ATCCCCAGTTACTGGTCAACAGATTAGGTCAAATTCCCCAGCAGAGATTA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCCCCAGTTACTGGTCAACAGATTAGGTCAAATTCCCCAGCAGAGATTA  200

seq1  TTCTACTCTATGGGCAGCAAGAAAAGTCCATCAAAGTCATTATATGTTTA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTACTCTATGGGCAGCAAGAAAAGTCCATCAAAGTCATTATATGTTTA  250

seq1  AAAAAAAAAACTAAAAATAGACCTTGTTTAGATTTATAGCATTGACTTTT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAAAAAAAACTAAAAATAGACCTTGTTTAGATTTATAGCATTGACTTTT  300

seq1  ACACACTCTCTCTCACACACACACACAATCAGTTCCTATGTCTTTGGGTT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACACACTCTCTCTCACACACACACACAATCAGTTCCTATGTCTTTGGGTT  350

seq1  CCTCCTTTTTCCAAGTGAAAAGGATGTGACTGCCTAACCTAGGTATACTA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTCCTTTTTCCAAGTGAAAAGGATGTGACTGCCTAACCTAGGTATACTA  400

seq1  GCTGTCTCCCTCAGTGGAGAAGATGAGAAAAACATCTTGGGGTACTTTTC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTGTCTCCCTCAGTGGAGAAGATGAGAAAAACATCTTGGGGTACTTTTC  450

seq1  CATTATAGGATCCCCTCCCTGATGCCTAAAATACTTGTAGCTACACTTAA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATTATAGGATCCCCTCCCTGATGCCTAAAATACTTGTAGCTACACTTAA  500

seq1  AAGGGTTTTGCTTTGGGATTTTTGTTTGTTTGGTTTTTTTGGGTTTTTTG  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGGGTTTTGCTTTGGGATTTTTGTTTGTTTGGTTTTTTTGGGTTTTTTG  550

seq1  TTTGTTTGTTTGTTTGTTTTTGTTTTTAGAAAAAGAAAAATGAGAAGAAA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTGTTTGTTTGTTTGTTTTTGTTTTTAGAAAAAGAAAAATGAGAAGAAA  600

seq1  AAAAAACTAGTAATTAATTAAGAGGCTGGGCCACCTAAAATTAAGCTTGT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAAAACTAGTAATTAATTAAGAGGCTGGGCCACCTAAAATTAAGCTTGT  650

seq1  CTGTAGCTGACACTCAATGCACTTTATAAGTACATATTAAGGACTATAAG  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGTAGCTGACACTCAATGCACTTTATAAGTACATATTAAGGACTATAAG  700

seq1  AAAAACTTACCAAATAGCTAAGAACAACCACTTTATTTGAGGATGAGAAG  750
      ||||||||||| ||||||||||||||||||||||||||||||||||||||
seq2  AAAAACTTACC-AATAGCTAAGAACAACCACTTTATTTGAGGATGAGAAG  749

seq1  TAAAACATCGGCACCCTCTATGACTAGAATTCTACACTGATCTAGAAAAT  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAAACATCGGCACCCTCTATGACTAGAATTCTACACTGATCTAGAAAAT  799

seq1  GAAATACCTGCCT-GAGGTTTATGACTTTGCACATGCTACGATGCTATTC  849
      ||||||||||||| ||||||||||| ||||||||||||||||||||||||
seq2  GAAATACCTGCCTGGAGGTTTATGA-TTTGCACATGCTACGATGCTATTC  848

seq1  CAGTTTTGAAAGTCACCAAATTTAAAGGACCCTTGGTCAAATCTGTGATC  899
      ||||||||||||||||||||||||||||| ||||||||||||||||||||
seq2  CAGTTTTGAAAGTCACCAAATTTAAAGGATCCTTGGTCAAATCTGTGATC  898

seq1  AGTGTTCAC  908
      |||||||||
seq2  AGTGTTCAC  907