BAC Information

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BAC

Clone NameB6Ng01-064H03
Chromosome5 (Build37)9 (Build37)
Map Location 4,172,700 - 4,173,21692,096,905 - 92,097,997
singlet/doubletsingletsinglet
Overlap genenone
Upstream geneLOC100034726, Cdk6, 5830415L20Rik, 1700109H08Rik, C030048B08Rik, Pex1, Gatad1, 4930511M11Rik, Ankib1, Krit1, 4932412H11Rik, LOC100041009, LOC667617, Mterf, Akap9, Cyp51
Downstream geneENSMUSG00000053178, LOC100041073, Fzd1, LOC667678, Pftk1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-064H03.bB6Ng01-064H03.g
ACCDH884229DH884230
length9511,082
definitionDH884229|Mus musculus domesticus DNA, BAC clone: B6Ng01-064H03, 5' end.DH884230|Mus musculus domesticus DNA, BAC clone: B6Ng01-064H03, 3' end.
singlet/doubletsingletsinglet
BLAST hituniqueunique
Map location.(4,172,700 - 4,173,216)(92,096,905 - 92,097,997)
sequence
gaattcattttctgttggctacccactcctgagcatgcaacctattcttt
tttttttctttttttttttcattttttattaggtatttagttcatttaca
tttccaatgctataccaaaagtcccccatatccacccacccccactcccc
cgcccacctactccccctttttggccctggtgttcccctgtactggggca
tataaagtttgcaagtccaatgggcctctctttccagtgatggccgacta
ggccatctttcgatatatatgcagctagagtcaagagctccggggtactg
gttagttcataatgttgttccacctatagggttgcagatccctttagctt
cttggctactttctctagctcctccattgggagccctatggtccatccat
tagctgactgtgagcatccacttcagtgtttgctaggccccggcatagtc
tcacaagagacagctacatctgggtcctttcaataaaatcttgctagtgt
atgcaatggtgtcagcgtttggatgctgattatggggtggatccctggat
atggcagtctctacatggtccatcctttcatctcagctccaaactttgtc
tctgtaactccttccatgggtgttttgttgccgaatctaagaaggggcat
agtgtccacacttcagtcttcattcttcatgagtttcatgtgtttagcaa
attatatcttatatcttgggtatcctaggtttggggctatatccacttat
cagtgagtacatattgtgtgagtttctttgtgaatgtgttacctcactca
gatgatgccctccaggtccatccatttggctaggaatttcataaatttca
ttctttttaatagctgagtagtactccattgtgtagatgtaccacatttt
ctgtatccattcctcttttgagggcatcttggttctctcagcttctggct
a
gaattcattactcaaatcatgaccctataattcttctatgagaccatgcc
ttgtttacaggatgtgtgagctgtcttcatcaactgttattgttcaacta
ataatttacagaactcttattgaaagtccaaaggcaaaggctccaatagt
aagaagagcaagagtttttatgctgtgtgacaatgaaaaagagagctgag
actacaaattatttaattgtgtgtgaacaataatggagaagactttaatt
tcttttttactttttaatttatttacatttctagtgttatccttttacct
ggtttccctcctggaaattccttatcccattccccctccacctgcttcta
tgagggtgttcctccacccacctacccactcttgtctccccttcctcgat
tctcctacactggcacgtctatcaagcctggagaagacattttaaaacgt
cctcatctcttgtctgaggaaatgaagtcacaggatgaatactgggcatc
ccgcttcttctagtccctgttttctcactgactccttcaggtggccccgt
gctttcatggaataaatatctatttaagctgaacgatgatattttataaa
aagttctaatttttattctaattctcagaccaaggaaaacagaaaacttt
cagacaccaacagaaagtcaagtgaagcagagaaagtgttctggtatcaa
atatcggccacctttggcctaggtaattaataatgaagtatgtaactcag
attgttgcttaggaatttattggctattattgggtgtgtttgtgagcgtg
atgtatgctgtacatacaacagtgcccatgtggtagttagacgacacatt
ttaggggtgtttctgttctttatgtggactctgaggggtggaactcatgt
gctaggcttacagaggatgaccggcactcccagctatctaccagctcata
tattacctttgcaatgaatattaaaatatttgtttagagcagcctcattt
gtttttattcgtagcttatcttcctgctccttaccccatgaatgccaatc
gtcagcctttactgaagtgctgtacctgcatt
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr5_4172700_4173216
seq2: B6Ng01-064H03.b_90_588

seq1  TTCTTTTTTTTTTTTCTGAATTTGTGTTTTTATTTTTTTTTTCCATTTTT  50
      ||||||||                  ||||| |||||||||| |||||||
seq2  TTCTTTTT------------------TTTTTCTTTTTTTTTTTCATTTTT  32

seq1  TATTAGGTATTTAACTCATTTACATTTCCAATGCTATACCAAAAGTCCCC  100
      |||||||||||||  |||||||||||||||||||||||||||||||||||
seq2  TATTAGGTATTTAGTTCATTTACATTTCCAATGCTATACCAAAAGTCCCC  82

seq1  CATATCCACCCACCCCCACTCCCCTGCCCACCCACTCCCCCTTTTTGGCC  150
      |||||||||||||||||||||||| ||||||| |||||||||||||||||
seq2  CATATCCACCCACCCCCACTCCCCCGCCCACCTACTCCCCCTTTTTGGCC  132

seq1  CTGGTATTCCCCTGTACTGGGGCATATAAAGTTTGCAAGTCCAATGGGCC  200
      ||||| ||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGGTGTTCCCCTGTACTGGGGCATATAAAGTTTGCAAGTCCAATGGGCC  182

seq1  TCTCTTTCCAGTGATGGCCGACTAGGCCATCTTTTGATATATATGCAGCT  250
      |||||||||||||||||||||||||||||||||| |||||||||||||||
seq2  TCTCTTTCCAGTGATGGCCGACTAGGCCATCTTTCGATATATATGCAGCT  232

seq1  AGAGTCAAGAGCTCCGGGGTACTGGTTAGCTCATAATGTTGTTCCACCTA  300
      ||||||||||||||||||||||||||||| ||||||||||||||||||||
seq2  AGAGTCAAGAGCTCCGGGGTACTGGTTAGTTCATAATGTTGTTCCACCTA  282

seq1  TAGGGTTGCAGATCCCTTTAGCTCCTTGGCTACTTTCTCTAGCTCCTCCA  350
      ||||||||||||||||||||||| ||||||||||||||||||||||||||
seq2  TAGGGTTGCAGATCCCTTTAGCTTCTTGGCTACTTTCTCTAGCTCCTCCA  332

seq1  TTGGGAGCCCTATGATCCATCCATTAGCTGACTGTGAGCATCCACTTCGG  400
      |||||||||||||| ||||||||||||||||||||||||||||||||| |
seq2  TTGGGAGCCCTATGGTCCATCCATTAGCTGACTGTGAGCATCCACTTCAG  382

seq1  TGTTTGCTGGGCCCCGGCATAGTCTCACAAGGGACAGCTACATCTGCGTC  450
      |||||||| |||||||||||||||||||||| |||||||||||||| |||
seq2  TGTTTGCTAGGCCCCGGCATAGTCTCACAAGAGACAGCTACATCTGGGTC  432

seq1  CTTTCAATAAAATCTTGCTAGTGTATGCAATGGTGTCAGCGTTTGGATGC  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTTCAATAAAATCTTGCTAGTGTATGCAATGGTGTCAGCGTTTGGATGC  482

seq1  TGATTATGGGGTGGATC  517
      |||||||||||||||||
seq2  TGATTATGGGGTGGATC  499

seq1: chr9_92096905_92097997
seq2: B6Ng01-064H03.g_67_1148 (reverse)

seq1  AATGCAGTGATCAGCACTTCAGTAAAGGCTGACGATTTGGCATTCATGGG  50
      ||||||| |  |||||||||||||||||||||||| ||||||||||||||
seq2  AATGCAG-GTACAGCACTTCAGTAAAGGCTGACGA-TTGGCATTCATGGG  48

seq1  GTTAGGAGCAGAGAAGATTAAGCTACGAATATAAACAAATGAGGCTGCTC  100
      || |||||||| ||||| ||||||||||||| ||||||||||||||||||
seq2  GTAAGGAGCAG-GAAGA-TAAGCTACGAATAAAAACAAATGAGGCTGCTC  96

seq1  TAAAACAAATATTTTATATTTCATTTGCAAAGGTAATATATGAGCTGGTA  150
      | ||||||||||||||   |||| ||||||||||||||||||||||||| 
seq2  T-AAACAAATATTTTAATATTCA-TTGCAAAGGTAATATATGAGCTGGT-  143

seq1  AGATAGCTTGGGAGTGCCGGTCATCCTCTGTAAGCCTAGCAACATGAGTT  200
      ||||||| |||||||||||||||||||||||||||||||| |||||||||
seq2  AGATAGC-TGGGAGTGCCGGTCATCCTCTGTAAGCCTAGC-ACATGAGTT  191

seq1  CCACCCCCTCAGAGTCCACATAAAGAACAGAAACACCCCCTAAAATGTGT  250
      ||| ||||||||||||||||||||||||||||||| ||||||||||||||
seq2  CCA-CCCCTCAGAGTCCACATAAAGAACAGAAACA-CCCCTAAAATGTGT  239

seq1  CGTCTAACTACCACATGGGCACTGTTGTATGTACAGCATACATCACGCTC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGTCTAACTACCACATGGGCACTGTTGTATGTACAGCATACATCACGCTC  289

seq1  ACAAACACACCCAATAATAGCCAATAAATTCCTAAGCAACAATCTGAGTT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAAACACACCCAATAATAGCCAATAAATTCCTAAGCAACAATCTGAGTT  339

seq1  ACATACTTCATTATTAATTACCTAGGCCAAAGGTGGCCGATATTTGATAC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACATACTTCATTATTAATTACCTAGGCCAAAGGTGGCCGATATTTGATAC  389

seq1  CAGAACACTTTCTCTGCTTCACTTGACTTTCTGTTGGTGTCTGAAAGTTT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGAACACTTTCTCTGCTTCACTTGACTTTCTGTTGGTGTCTGAAAGTTT  439

seq1  TCTGTTTTCCTTGGTCTGAGAATTAGAATAAAAATTAGAACTTTTTATAA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTGTTTTCCTTGGTCTGAGAATTAGAATAAAAATTAGAACTTTTTATAA  489

seq1  AATATCATCGTTCAGCTTAAATAGATATTTATTCCATGAAAGCACGGGGC  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATATCATCGTTCAGCTTAAATAGATATTTATTCCATGAAAGCACGGGGC  539

seq1  CACCTGAAGGAGTCAGTGAGAAAACAGGGACTAGAAGAAGCGGGATGCCC  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACCTGAAGGAGTCAGTGAGAAAACAGGGACTAGAAGAAGCGGGATGCCC  589

seq1  AGTATTCATCCTGTGACTTCATTTCCTCAGACAAGAGATGAGGACGTTTT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTATTCATCCTGTGACTTCATTTCCTCAGACAAGAGATGAGGACGTTTT  639

seq1  AAAATGTCTTCTCCAGGCTTGATAGACGTGCCAGTGTAGGAGAATCGAGG  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAATGTCTTCTCCAGGCTTGATAGACGTGCCAGTGTAGGAGAATCGAGG  689

seq1  AAGGGGAGACAAGAGTGGGTAGGTGGGTGGAGGAACACCCTCATAGAAGC  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGGGGAGACAAGAGTGGGTAGGTGGGTGGAGGAACACCCTCATAGAAGC  739

seq1  AGGTGGAGGGGGAATGGGATAAGGAATTTCCAGGAGGGAAACCAGGTAAA  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGTGGAGGGGGAATGGGATAAGGAATTTCCAGGAGGGAAACCAGGTAAA  789

seq1  AGGATAACACTAGAAATGTAAATAAATTAAAAAGTAAAAAAGAAATTAAA  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGATAACACTAGAAATGTAAATAAATTAAAAAGTAAAAAAGAAATTAAA  839

seq1  GTCTTCTCCATTATTGTTCACACACAATTAAATAATTTGTAGTCTCAGCT  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCTTCTCCATTATTGTTCACACACAATTAAATAATTTGTAGTCTCAGCT  889

seq1  CTCTTTTTCATTGTCACACAGCATAAAAACTCTTGCTCTTCTTACTATTG  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCTTTTTCATTGTCACACAGCATAAAAACTCTTGCTCTTCTTACTATTG  939

seq1  GAGCCTTTGCCTTTGGACTTTCAATAAGAGTTCTGTAAATTATTAGTTGA  1000
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGCCTTTGCCTTTGGACTTTCAATAAGAGTTCTGTAAATTATTAGTTGA  989

seq1  ACAATAACAGTTGATGAAGACAGCTCACACATCCTGTAAACAAGGCATGG  1050
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAATAACAGTTGATGAAGACAGCTCACACATCCTGTAAACAAGGCATGG  1039

seq1  TCTCATAGAAGAATTATAGGGTCATGATTTGAGTAATGAATTC  1093
      |||||||||||||||||||||||||||||||||||||||||||
seq2  TCTCATAGAAGAATTATAGGGTCATGATTTGAGTAATGAATTC  1082