BAC Information

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BAC

Clone NameB6Ng01-065B14
Chromosome5 (Build37)
Map Location 43,684,206 - 43,918,669
singlet/doubletdoublet
Overlap geneC1qtnf7
Upstream geneEG636612, LOC433883, EG665934, Cpeb2
Downstream gene4833430A08Rik, 5730509K17Rik, Fbxl5, Bst1, Cd38, EG665989, EG665994, LOC100040677, EG384179, Fgfbp1, Prom1, LOC100041413, Tapt1, LOC100040717, LOC545747, Ldb2
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-065B14.bB6Ng01-065B14.g
ACCDH884677DH884678
length385859
definitionDH884677|Mus musculus domesticus DNA, BAC clone: B6Ng01-065B14, 5' end.DH884678|Mus musculus domesticus DNA, BAC clone: B6Ng01-065B14, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(43,684,206 - 43,684,590)(43,917,803 - 43,918,669)
sequence
gaattctatgatactagaaagatgactcatcagttaaaaactcttccaga
ggaccagagttcagttctcagtacccatgtcaggtgggtcaaaactttaa
ctccaggggataaactgtaaccctcttccaagaagaaggctttccagtat
cagtgggagagagaagatggttgctaggtgacggtcatgggtaaagatgg
caggctaatgtgtcactaggcaatacaatttctattccagttaggtgact
actttaaggttctagcaccttagcattgttacatggtttacttcctcata
gcaaaggagcaaacttactttgttccttattttcgaatttaagatacgtg
tgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgt
gaattcatttcctctcctttggctcttcaccctccatgcgccagagaatg
tgtgggtctaaaaattccctggtgggctgccaggaagcagaatttcatgg
tcaatcactctaactagactgatcctttcgggtcacatattttatttttc
ctccttttcatggctctgattttatgtttccacttcacttgtttattttg
catatttctttcccttcacctaaaatcgcatacaaaaggactgactggta
tttatggaatgtttgctagaaaccccagttatctagggacatagaaactg
aaggagacagatgcacaaataaaaatggagagagagagagagagagagag
agagagagagagatagaggtcagactttactgggtgtggggaaacacaaa
aggagaggacttggagagacaggaatgggaagaacagagaatgcggtatg
actagatcggtaaacaaaaagcagaaaatgaaagatgggcacggtgataa
gaaaagagcaaggagaaagcagtggaggaggcagctgtcagacagtggcc
ctggttaatgaccatgaacaaggatctaatggggaaactgattctctgca
gaagatctttggggtatagagatgacatggcctatagcagatgataaaat
catcggatcgtaagctccatggcgtaccctcttgggaacgggcagtgaac
tatattttacatgtaaccctctgaacttatgaccaagatgtagagatact
agagtccctggcaaacaaattatatattcatttatgtggttgtcatgatg
ggctgtaaggctttgggtcctacagggcatatgtataatgtgaccgtgag
tgttgtggg
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr5_43684206_43684590
seq2: B6Ng01-065B14.b_44_428

seq1  GAATTCTATGATACTAGAAAGATGACTTAGCAGTTAAAAACTCTTCCAGA  50
      ||||||||||||||||||||||||||| | ||||||||||||||||||||
seq2  GAATTCTATGATACTAGAAAGATGACTCATCAGTTAAAAACTCTTCCAGA  50

seq1  GGACCAGAGTTCAGTTCTCAGTACCCATGTCAGGTGGGTCAAAACTTTAA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGACCAGAGTTCAGTTCTCAGTACCCATGTCAGGTGGGTCAAAACTTTAA  100

seq1  CTCCAGGGGATAAACTGTAACCCTCTTCCAAGAAGAAGGCTTTCCAGTAT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCCAGGGGATAAACTGTAACCCTCTTCCAAGAAGAAGGCTTTCCAGTAT  150

seq1  CAGTGGGAGAGAGAAGATGGTTGCTAGGTGACGGTCATGGGTAAAGATGG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGTGGGAGAGAGAAGATGGTTGCTAGGTGACGGTCATGGGTAAAGATGG  200

seq1  CAGGCTAATGTGTCACTAGGCAATACAATTTCTATTCCAGTTAGGTGACT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGGCTAATGTGTCACTAGGCAATACAATTTCTATTCCAGTTAGGTGACT  250

seq1  ACTTTAAGGTTCTAGCACCTTAGCATTGTTACATGGTTTACTTCCTCATA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTTTAAGGTTCTAGCACCTTAGCATTGTTACATGGTTTACTTCCTCATA  300

seq1  GCAAAGGAGCAAACTTACTTTGTTCCTTATTTTCGAATTTAAGATACGTG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCAAAGGAGCAAACTTACTTTGTTCCTTATTTTCGAATTTAAGATACGTG  350

seq1  TGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGT  385
      |||||||||||||||||||||||||||||||||||
seq2  TGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGT  385

seq1: chr5_43917803_43918669
seq2: B6Ng01-065B14.g_68_925 (reverse)

seq1  CCACAACACCACTCCACGGCTCACACTATACATCTGCCCCTGTAGGACCC  50
      |||||||||     ||||| ||||| ||||||| || |||||||||||||
seq2  CCACAACAC----TCACGG-TCACATTATACATATG-CCCTGTAGGACCC  44

seq1  AAAGCCTTACAG-CCATCATGACAACCACATAAATGAATATATAATTTGT  99
      |||||||||||| |||||||||||||||||||||||||||||||||||||
seq2  AAAGCCTTACAGCCCATCATGACAACCACATAAATGAATATATAATTTGT  94

seq1  TTGCCAGTGACTCTAGTATCTTCACATCTTTGGTCATAAGTCTCAGAGGG  149
      ||||||| |||||||||||||  ||||| |||||||||||| ||||||||
seq2  TTGCCAGGGACTCTAGTATCTCTACATC-TTGGTCATAAGT-TCAGAGGG  142

seq1  TTACATGTAAAATATAGTTCACTGCCCGTTCCCAAAAGGGTACACCATGG  199
      ||||||||||||||||||||||||||||||||||| ||||||| ||||||
seq2  TTACATGTAAAATATAGTTCACTGCCCGTTCCCAAGAGGGTACGCCATGG  192

seq1  AGCTTACGATCAGATGATTTTATCATCTGCTCTTGGCCATGTCAGTCTCT  249
      ||||||||||| ||||||||||||||||||| | |||||||||| |||||
seq2  AGCTTACGATCCGATGATTTTATCATCTGCTATAGGCCATGTCA-TCTCT  241

seq1  ATACCCCTTAGTTCCTCTGCAGTGACTCAGTTTCCCCTTCAGCTCCCTCT  299
      |||||||  || || ||||||| || ||||||||||| | || | |||  
seq2  ATACCCCAAAGATCTTCTGCAGAGAATCAGTTTCCCCATTAGAT-CCTTG  290

seq1  TTTCTGGTCCTTAACCAGGGCCACTGTCTGACAGCTGCCTCCTCCACTGC  349
      ||  ||||| ||||||||||||||||||||||||||||||||||||||||
seq2  TTCATGGTCATTAACCAGGGCCACTGTCTGACAGCTGCCTCCTCCACTGC  340

seq1  TCTCTCCCTGCTCTCTTCTTTGAACCGTGCCCATCTTTCATTTTCTGCTT  399
      | ||||| |||||| |||||   |||||||||||||||||||||||||||
seq2  TTTCTCCTTGCTCTTTTCTTATCACCGTGCCCATCTTTCATTTTCTGCTT  390

seq1  TCTGTTTACCGATCTTGTCATACCGCATTCTCTGTTCTTCCCATTCCTGT  449
      | ||||||||||||| ||||||||||||||||||||||||||||||||||
seq2  TTTGTTTACCGATCTAGTCATACCGCATTCTCTGTTCTTCCCATTCCTGT  440

seq1  CTCTCCAAGTCCTCTCCTTTTGTGTTTCCCCACACCCAGTCTAGTCTGAC  499
      ||||||||||||||||||||||||||||||||||||||||  ||||||||
seq2  CTCTCCAAGTCCTCTCCTTTTGTGTTTCCCCACACCCAGTAAAGTCTGAC  490

seq1  CTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCCATTTTTAT  549
      |||| |||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCTATCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCCATTTTTAT  540

seq1  TTGTGCATCTGTCTCCTTCAGTTTCTATGTCCCTAGATAACTGGGGTTTC  599
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGTGCATCTGTCTCCTTCAGTTTCTATGTCCCTAGATAACTGGGGTTTC  590

seq1  TAGCAAACATTCCATAAATACCAGTCAGTCCTTTTGTATGCGATTTTAGG  649
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGCAAACATTCCATAAATACCAGTCAGTCCTTTTGTATGCGATTTTAGG  640

seq1  TGAAGGGAAAGAAATATGCAAAATAAACAAGTGAAGTGGAAACATAAAAT  699
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAAGGGAAAGAAATATGCAAAATAAACAAGTGAAGTGGAAACATAAAAT  690

seq1  CAGAGCCATGAAAAGGAGGAAAAATAAAATATGTGACCCGAAAGGATCAG  749
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGAGCCATGAAAAGGAGGAAAAATAAAATATGTGACCCGAAAGGATCAG  740

seq1  TCTAGTTAGAGTGATTGACCATGAAATTCTGCTTCCTGGCAGCCCACCAG  799
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTAGTTAGAGTGATTGACCATGAAATTCTGCTTCCTGGCAGCCCACCAG  790

seq1  GGAATTTTTAGACCCACACATTCTCTGGCGCATGGAGGGTGAAGAGCCAA  849
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAATTTTTAGACCCACACATTCTCTGGCGCATGGAGGGTGAAGAGCCAA  840

seq1  AGGAGAGGAAATGAATTC  867
      ||||||||||||||||||
seq2  AGGAGAGGAAATGAATTC  858