BAC Information

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BAC

Clone NameB6Ng01-065F17
Chromosome5 (Build37)
Map Location 37,067,273 - 37,218,033
singlet/doubletdoublet
Overlap geneLOC100040278, Cno, Mrfap1, Man2b2
Upstream geneAblim2, Afap1, LOC100040209, Sorcs2, 2310020A21Rik, Grpel1, Ccdc96, Tbc1d14, D5Ertd579e, LOC100040825
Downstream genePpp2r2c, Wfs1, Jakmip1, EG330070, Gm1043, LOC100040936, Crmp1, Evc, Evc2, LOC100040355, LOC100040988, Stk32b, Cytl1, Msx1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-065F17.bB6Ng01-065F17.g
ACCDH884855DH884856
length1,036853
definitionDH884855|Mus musculus domesticus DNA, BAC clone: B6Ng01-065F17, 5' end.DH884856|Mus musculus domesticus DNA, BAC clone: B6Ng01-065F17, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(37,216,986 - 37,218,033)(37,067,273 - 37,067,899)
sequence
gaattcctggtctcgttttgcacatgtgaaaccgagacccaggcgactag
gttaaggatcattactgttcttaagaggatctgggtgcagctcctagaat
caacaccaggaagctcagaggtgtctgtaactccagctccagggcaccca
gcaccctcctctggcctctgtgggcacctgcactcacaaacacttatcca
cctgcattcacatgtttgttaaaagtaaatctttcttcacgtctgcgctg
agccaggcacataaggaccagaactttgggatcatatggaacgatgttgc
tgggggctgggaagccatgtttcagttttgcagattgaaagttctggaac
tgaatggcggtatgtgtaaatgtaattgactctaagaactgtacatctag
agactggtggtaaattgttcgatgtatacagttaaaagttaatataaaac
tgtcctctgcagccctcaggacttacccagcctcacactgaagcctcaca
ggacacccagagagccagggtgagggtgatgatgggagaggccactctgg
tgagccccgctgggtgacttctgtctttgcagaaggacatggctttctct
atgaaacgtttggaatccggccacagttctcctggcacgtggaccctttc
ggtgcatcagcaacgacccctaccctgtttgccctggcaggcttcaatgc
ccatctcatctctcgtattgactacgacctcagggatgccatgcaggaag
ctcaggtgtgtcccacgcaatacctactgtcacctcctgccgccttcctg
ccctgcattttgtgcattggattttgtggcaactgccaccccttagctgg
gcctgggcctgggctggcgccttcctagagtattcatgtgattggagctg
agctgaactcctgggattgtggatgaaggatagaggacagggaggtaggt
tcaactggggacttacacacatctcctaatgggtgaatggcttgaatgga
cccggctggtgctgacgtgttcacacagcatcccat
gaattcaaaaacaccaggacctgggaaattagaatttacagtgtctgaca
actattcaaaataggagacaagaatgagaaaaataaattcacttaaatat
actaaaagctgatatctgtactttaattatcactttttcaaaactgatag
aaactaaatgagcaagatagtcaaagactccaagcacatgaatgaagaaa
atggcacagcacagaaaacctcaagcctctaaccaacataaaaattctaa
agcggggctggagagatggctcagtgggtaagagcacccgactgctcttc
tgaaggtccggagttcaaatcccagcaaccacatggtggctcacaaccat
ctgtaacaagatctgatgccctcttctggagtgtctgaagacagctacag
tgtacttacatataataaataaataaatcttttaaaaaaaaattctaaag
cagccagggtgaggcagagacattaagtatagtagcaaagggtaaggata
gcatccagctcttgttgaaatcagtgtaagtgagcagatgatcaggtaag
atttgaaacaccaaggaccttgtcaacctagtactcccatacttataaaa
ctgtctttcaaagccaagatgaaatagatttctcagacacatgaaaattt
gaactattcccaacaaaccctgccctataggaaatatgaagtcttttaga
cagaagaaaagggcattgcaccatagaggactggagagatgactcagtgg
gttaagagcactgactgctcttccagaggtcctggagctcaattcccagc
aaccacatggatggctcacacccatctgtataacatccaatgccctcttt
tgg
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr5_37216986_37218033
seq2: B6Ng01-065F17.b_48_1083 (reverse)

seq1  ATGGAGATGCTGGGTGAACACAGCCAGCACCAGGCCGGGTCCATCCCAGC  50
      |||| ||||||| |||||||| | |||||||| ||||||||||| | |||
seq2  ATGG-GATGCTGTGTGAACAC-GTCAGCACCA-GCCGGGTCCATTCAAGC  47

seq1  ACAATCAACCCATTATGGAGGATGTGTGTGATGTCCCCAGCTGAACCTAC  100
       || || |||||||| ||| ||||||||| | |||||||| |||||||| 
seq2  -CATTC-ACCCATTA-GGA-GATGTGTGT-AAGTCCCCAGTTGAACCTA-  91

seq1  CCTCCCTGTCCCTCTAATCCTTCATCCACATTCCCA-GAGTTCAGCTCAG  149
      ||||||||| ||||| |||||||||||||| ||||| |||||||||||||
seq2  CCTCCCTGT-CCTCT-ATCCTTCATCCACAATCCCAGGAGTTCAGCTCAG  139

seq1  CTCCAATCCACATGAATAACTCTAGGAAGGCGCCAGCCCAGGCCCAGGCC  199
      ||||||| ||||||||| ||||||||||||||||||||||||||||||||
seq2  CTCCAAT-CACATGAAT-ACTCTAGGAAGGCGCCAGCCCAGGCCCAGGCC  187

seq1  CAGCTAAGGGGTGGCAGTTGCCACAAAATCCAATGCACAAAATGCAGGGC  249
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGCTAAGGGGTGGCAGTTGCCACAAAATCCAATGCACAAAATGCAGGGC  237

seq1  AGGAAGGCGGCAGGAGGTGACAGTAGGTATTGCGTGGGACACACCTGAGC  299
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGAAGGCGGCAGGAGGTGACAGTAGGTATTGCGTGGGACACACCTGAGC  287

seq1  TTCCTGCATGGCATCCTTGAGGTCGTAGTCAATACGAGAGATGAGATGGG  349
      |||||||||||||||| |||||||||||||||||||||||||||||||||
seq2  TTCCTGCATGGCATCCCTGAGGTCGTAGTCAATACGAGAGATGAGATGGG  337

seq1  CATTGAAGCCTGCCAGGGCAAACAGGGTAGGGGTCGTTGCTGATGCACCG  399
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATTGAAGCCTGCCAGGGCAAACAGGGTAGGGGTCGTTGCTGATGCACCG  387

seq1  AAAGGGTCCACGTGCCAGGAGAACTGTGGCCGGATTCCAAACGTTTCATA  449
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAGGGTCCACGTGCCAGGAGAACTGTGGCCGGATTCCAAACGTTTCATA  437

seq1  GAGAAAGCCATGTCCTTCTGCAAAGACAGAAGTCACCCAGCGGGGCTCAC  499
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGAAAGCCATGTCCTTCTGCAAAGACAGAAGTCACCCAGCGGGGCTCAC  487

seq1  CAGAGTGGCCTCTCCCATCATCACCCTCACCCTGGCTCTCTGGGTGTCCT  549
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGAGTGGCCTCTCCCATCATCACCCTCACCCTGGCTCTCTGGGTGTCCT  537

seq1  GTGAGGCTTCAGTGTGAGGCTGGGTAAGTCCTGAGGGCTGCAGAGGACAG  599
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGAGGCTTCAGTGTGAGGCTGGGTAAGTCCTGAGGGCTGCAGAGGACAG  587

seq1  TTTTATATTAACTTTTAACTGTATACATCGAACAATTTACCACCAGTCTC  649
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTATATTAACTTTTAACTGTATACATCGAACAATTTACCACCAGTCTC  637

seq1  TAGATGTACAGTTCTTAGAGTCAATTACATTTACACATACCGCCATTCAG  699
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGATGTACAGTTCTTAGAGTCAATTACATTTACACATACCGCCATTCAG  687

seq1  TTCCAGAACTTTCAATCTGCAAAACTGAAACATGGCTTCCCAGCCCCCAG  749
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCCAGAACTTTCAATCTGCAAAACTGAAACATGGCTTCCCAGCCCCCAG  737

seq1  CAACATCGTTCCATATGATCCCAAAGTTCTGGTCCTTATGTGCCTGGCTC  799
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAACATCGTTCCATATGATCCCAAAGTTCTGGTCCTTATGTGCCTGGCTC  787

seq1  AGCGCAGACGTGAAGAAAGATTTACTTTTAACAAACATGTGAATGCAGGT  849
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCGCAGACGTGAAGAAAGATTTACTTTTAACAAACATGTGAATGCAGGT  837

seq1  GGATAAGTGTTTGTGAGTGCAGGTGCCCACAGAGGCCAGAGGAGGGTGCT  899
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGATAAGTGTTTGTGAGTGCAGGTGCCCACAGAGGCCAGAGGAGGGTGCT  887

seq1  GGGTGCCCTGGAGCTGGAGTTACAGACACCTCTGAGCTTCCTGGTGTTGA  949
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGTGCCCTGGAGCTGGAGTTACAGACACCTCTGAGCTTCCTGGTGTTGA  937

seq1  TTCTAGGAGCTGCACCCAGATCCTCTTAAGAACAGTAATGATCCTTAACC  999
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTAGGAGCTGCACCCAGATCCTCTTAAGAACAGTAATGATCCTTAACC  987

seq1  TAGTCGCCTGGGTCTCGGTTTCACATGTGCAAAACGAGACCAGGAATTC  1048
      |||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGTCGCCTGGGTCTCGGTTTCACATGTGCAAAACGAGACCAGGAATTC  1036

seq1: chr5_37067273_37067899
seq2: B6Ng01-065F17.g_71_699

seq1  GAATTCAAAAACACCAGGACCTGGGAAATTAGAATTTACAGTGTCTGACA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCAAAAACACCAGGACCTGGGAAATTAGAATTTACAGTGTCTGACA  50

seq1  ACTATTCAAAATAGGAGACAAGAATGAGAAAAATAAATTCACTTAAATAT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTATTCAAAATAGGAGACAAGAATGAGAAAAATAAATTCACTTAAATAT  100

seq1  ACTAAAAGCTGATATCTGTACTTTAATTATCACTTTTTCAAAACTGATAG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTAAAAGCTGATATCTGTACTTTAATTATCACTTTTTCAAAACTGATAG  150

seq1  AAACTAAATGAGCAAGATAGTCAAAGACTCCAAGCACATGAATGAAGAAA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAACTAAATGAGCAAGATAGTCAAAGACTCCAAGCACATGAATGAAGAAA  200

seq1  ATGGCACAGCACAGAAAACCTCAAGCCTCTAACCAACATAAAAATTCTAA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGGCACAGCACAGAAAACCTCAAGCCTCTAACCAACATAAAAATTCTAA  250

seq1  AGCGGGGCTGGAGAGATGGCTCAGTGGGTAAGAGCACCCGACTGCTCTTC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCGGGGCTGGAGAGATGGCTCAGTGGGTAAGAGCACCCGACTGCTCTTC  300

seq1  TGAAGGTCCGGAGTTCAAATCCCAGCAACCACATGGTGGCTCACAACCAT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAAGGTCCGGAGTTCAAATCCCAGCAACCACATGGTGGCTCACAACCAT  350

seq1  CTGTAACAAGATCTGATGCCCTCTTCTGGAGTGTCTGAAGACAGCTACAG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGTAACAAGATCTGATGCCCTCTTCTGGAGTGTCTGAAGACAGCTACAG  400

seq1  TGTACTTACATATAATAAATAAATAAATCTTTTAAAAAAAAATTCTAAAG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTACTTACATATAATAAATAAATAAATCTTTTAAAAAAAAATTCTAAAG  450

seq1  CAGCCAGGGTGAGGCAGAGACATTAAGTATAGTAGCAAA-GGTAAGGATA  499
      ||||||||||||||||||||||||||||||||||||||| ||||||||||
seq2  CAGCCAGGGTGAGGCAGAGACATTAAGTATAGTAGCAAAGGGTAAGGATA  500

seq1  GCATCCAGCTCTTGTTGAAATCAGTGTAAGTGAGCAGATGATCAGGTAAG  549
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCATCCAGCTCTTGTTGAAATCAGTGTAAGTGAGCAGATGATCAGGTAAG  550

seq1  ATTTGAAACACCAAGGACCTTGTCAACCTAGTACT-CCATACTTATAAAA  598
      ||||||||||||||||||||||||||||||||||| ||||||||||||||
seq2  ATTTGAAACACCAAGGACCTTGTCAACCTAGTACTCCCATACTTATAAAA  600

seq1  CTGTCTTTCAAAGCCAAGATGAAATAGAT  627
      |||||||||||||||||||||||||||||
seq2  CTGTCTTTCAAAGCCAAGATGAAATAGAT  629