BAC Information

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BAC

Clone NameB6Ng01-066A01
Chromosome5 (Build37)
Map Location 36,116,383 - 36,283,980
singlet/doubletdoublet
Overlap geneAblim2, Afap1, LOC100040209
Upstream geneHdh, A930005I04Rik, Rgs12, Hgfac, Dok7, Lrpap1, Adra2c, Hmx1, Cpz, Plk-ps1, 2310079F23Rik, Acox3, Htra3, Sh3tc1
Downstream geneSorcs2, 2310020A21Rik, Grpel1, Ccdc96, Tbc1d14, D5Ertd579e, LOC100040278, LOC100040825, Cno, Mrfap1, Man2b2, Ppp2r2c
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-066A01.bB6Ng01-066A01.g
ACCDH885313DH885314
length631984
definitionDH885313|Mus musculus domesticus DNA, BAC clone: B6Ng01-066A01, 5' end.DH885314|Mus musculus domesticus DNA, BAC clone: B6Ng01-066A01, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(36,116,383 - 36,117,027)(36,282,997 - 36,283,980)
sequence
gaattcctggctagggacaggtgtccatggtgtacagaaccacacagacc
atgagagccagagatgcagggaggagcctgtactctttggaggctgacat
cgccagcccttgctttcagtcctataaaggggggttattcagggaaggac
agagcctgcatcccgaggagctatcttgtcctgggggctgcagcagctca
aggctgaggggaggggccggttacctctgcctctccattttgcaggccaa
gagccagggcctggcactgaacaggccttcttctcctacttagggagacc
ggatcgttcagaaatcagccacctgactgacatcaacacactcgtgtgtg
cgcgcgtctggcaagagccatttccccaggtgcctatgaactctggtggg
cagaaatgaattgcagcgggagctctgaactctgcagggaggctgcggtc
tgcaaggcaggaagaagccagcaattagaggaggtcgagtctggggcctg
ggcctgtgggtttatgatccatgatacagcttccgtttgcacagcacagt
gcgcacactcaaacacttgagattggagttcatagattcgctgacatccc
caaaacccaaggccctggggtgaggaagagc
gaattctagtcttgacagacagtccttagacagagttcaccagtccgccc
actctctgatctgcatgcaacagtgactacccagcaagacccagcacgca
ttttcttatgctttctcagccttaacctatgacagtgcagaagcagagcc
attaggaggtagcatccgagtagaaaagcagaggagactgaaggcatggg
atccaggtgcatgcctaaaattccacaggttgaatgcaaaggaaagatgc
caccagaccacatggagatggcatgctgagacgctggaaagacaagagag
gtaggggatggtaaggtcacacagagaatctatgtgtccacacacagaat
cagtagctccaggcctgactctgactgccaaggcctaactctaacacatc
ataacaacgcgttctctaatcccatctgtcagacaaaataagggtgccac
ggggattcagcaaccaactgcacacttaagaatggctgagaaagcagggt
gtggtgacaacctcaggcaggggaaggtggatctctgtgagtcaggttat
aagctctcaaagcccacactcagtgacacatttcctttagcaaggatgtc
cccaaccaagcctccccaaacagcacccccaactggagacattgtcttca
aatatcagagctgtggtggtttgaataggaatggccctataagtccatag
attagaatgcttggtcattgagtaggtgtgactcaaaggcagacccaatg
gctctcactctcttctgccaatccatatttagaactctttttttttttgc
tggttttttgtttgtttgtttgttgtttttcgagacagggtttctcttta
gctacctctccagcaccacgtctgcctgtgtggcaccatgcgtcctatta
ggacaaaaatggtctaaacttctgaactgtaagccagagactggtaagtt
aagacttgccaggaaggagtggggtgtcatggtg
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr5_36116383_36117027
seq2: B6Ng01-066A01.b_44_674

seq1  GAATTCCTGGCTAGGGACAGGTGTCCATGGTGTACAGAACCACACAGACC  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCCTGGCTAGGGACAGGTGTCCATGGTGTACAGAACCACACAGACC  50

seq1  ATGAGAGCCAGAGATGCAGGGAGGAGCCTGTACTCTTTGGAGGCTGACAT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGAGAGCCAGAGATGCAGGGAGGAGCCTGTACTCTTTGGAGGCTGACAT  100

seq1  CGCCAGCCCTTGCTTTCAGTCCTATAAAGGGGGGTTATTCAGGGAAGGAC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGCCAGCCCTTGCTTTCAGTCCTATAAAGGGGGGTTATTCAGGGAAGGAC  150

seq1  AGAGCCTGCATCCCGAGGAGCTATCTTGTCCTGGGGGCTGCAGCAGCTCA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAGCCTGCATCCCGAGGAGCTATCTTGTCCTGGGGGCTGCAGCAGCTCA  200

seq1  AGGCTGAGGGGAGGGGCCGGTTACCTCTGCCTCTCCATTTTGCAGGCCAA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGCTGAGGGGAGGGGCCGGTTACCTCTGCCTCTCCATTTTGCAGGCCAA  250

seq1  GAGCCAGGGCCTGGCACTGAACAGGCCTTCTTCTCCTACTTAGGGAGACC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGCCAGGGCCTGGCACTGAACAGGCCTTCTTCTCCTACTTAGGGAGACC  300

seq1  GGATCGTTCAGAAATCAGCCACCTGACTGACATCAACACACTCGTGTGTG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGATCGTTCAGAAATCAGCCACCTGACTGACATCAACACACTCGTGTGTG  350

seq1  CGCGCGTCTGGCAAGAGCCATTTCCCCAGGTGCCTATGAACTCTGGTGGG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGCGCGTCTGGCAAGAGCCATTTCCCCAGGTGCCTATGAACTCTGGTGGG  400

seq1  CAGAAATGAATTGCAGCGGGAGCTCTGAACTCTGCAGGGAGGCTGCGGTC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGAAATGAATTGCAGCGGGAGCTCTGAACTCTGCAGGGAGGCTGCGGTC  450

seq1  TGCAAGGCAGGAAGAAGCCAGCAATTAGAGGAGGTCGAGTCTGGGGCCTG  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCAAGGCAGGAAGAAGCCAGCAATTAGAGGAGGTCGAGTCTGGGGCCTG  500

seq1  GGCCTGTGGGTTTATGATCCATGATTACAGCTTCCGTTTGCACAGCACAG  550
      |||||||||||||||||||||||| |||||||||||||||||||||||||
seq2  GGCCTGTGGGTTTATGATCCATGA-TACAGCTTCCGTTTGCACAGCACAG  549

seq1  TGCGCACAACTCAGAACACTCTGAGACTGGAGTTCCATTAGACTTCGCTG  600
      ||||||| ||||| |||||| ||||| ||||||||   |||| |||||||
seq2  TGCGCAC-ACTCA-AACACT-TGAGATTGGAGTTC--ATAGA-TTCGCTG  593

seq1  AACATCCCCAGAAACACAAAGGGCCCTGGGGGTTGAGGGAAGAGC  645
       ||||||||| |||| |||  ||||||||||  ||| ||||||||
seq2  -ACATCCCCA-AAACCCAA--GGCCCTGGGG--TGA-GGAAGAGC  631

seq1: chr5_36282997_36283980
seq2: B6Ng01-066A01.g_67_1050 (reverse)

seq1  CACCATGACAACCCCACTCCTTCCTGGCAAGTCTTAACTTACCAGTCTCT  50
      ||||||||| ||||||||||||||||||||||||||||||||||||||||
seq2  CACCATGAC-ACCCCACTCCTTCCTGGCAAGTCTTAACTTACCAGTCTCT  49

seq1  GGCTTACAGTTCAGAGGTTTAGACCATTTTTGTCCTAATAGGACGCATGG  100
      ||||||||||||||| ||||||||||||||||||||||||||||||||||
seq2  GGCTTACAGTTCAGAAGTTTAGACCATTTTTGTCCTAATAGGACGCATGG  99

seq1  TGCCACACAGGCAGACGTGGTGCTGGAGAGGTAGCT-AAGAGAAACCCTG  149
      |||||||||||||||||||||||||||||||||||| |||||||||||||
seq2  TGCCACACAGGCAGACGTGGTGCTGGAGAGGTAGCTAAAGAGAAACCCTG  149

seq1  TCTCGAAAAACAAACAAACAAACAAACAAAAAACCAGCAAAAAAAAAAAG  199
      ||||||||||| ||||||||||||||||||||||||||||||||||||||
seq2  TCTCGAAAAAC-AACAAACAAACAAACAAAAAACCAGCAAAAAAAAAAAG  198

seq1  AGTTCTAAATATGGATTGGCAGAAGAGAGTGAGAGCCATTGGGTCTGCC-  248
      ||||||||||||||||||||||||||||||||||||||||||||||||| 
seq2  AGTTCTAAATATGGATTGGCAGAAGAGAGTGAGAGCCATTGGGTCTGCCT  248

seq1  TTGAGTCACACCTACTCAATGACCAAGCATTCTAATCTATGGACTTATAG  298
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGAGTCACACCTACTCAATGACCAAGCATTCTAATCTATGGACTTATAG  298

seq1  GGCCATTCCTATTCAAACCACCACAGCTCTGATATTTGAAGACAATGTCT  348
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCCATTCCTATTCAAACCACCACAGCTCTGATATTTGAAGACAATGTCT  348

seq1  CCAGTTGGGGGTGCTGTTTGGGGAGGCTTGGTTGGGGACATCCTTGCTAA  398
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAGTTGGGGGTGCTGTTTGGGGAGGCTTGGTTGGGGACATCCTTGCTAA  398

seq1  AGGAAATGTGTCACTGAGTGTGGGCTTTGAGAGCTTATAACCTGACTCAC  448
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGAAATGTGTCACTGAGTGTGGGCTTTGAGAGCTTATAACCTGACTCAC  448

seq1  AGAGATCCACCTTCCCCTGCCTGAGGTTGTCACCACACCCTGCTTTCTCA  498
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAGATCCACCTTCCCCTGCCTGAGGTTGTCACCACACCCTGCTTTCTCA  498

seq1  GCCATTCTTAAGTGTGCAGTTGGTTGCTGAATCCCCGTGGCACCCTTATT  548
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCATTCTTAAGTGTGCAGTTGGTTGCTGAATCCCCGTGGCACCCTTATT  548

seq1  TTGTCTGACAGATGGGATTAGAGAACGCGTTGTTATGATGTGTTAGAGTT  598
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGTCTGACAGATGGGATTAGAGAACGCGTTGTTATGATGTGTTAGAGTT  598

seq1  AGGCCTTGGCAGTCAGAGTCAGGCCTGGAGCTACTGATTCTGTGTGTGGA  648
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGCCTTGGCAGTCAGAGTCAGGCCTGGAGCTACTGATTCTGTGTGTGGA  648

seq1  CACATAGATTCTCTGTGTGACCTTACCATCCCCTACCTCTCTTGTCTTTC  698
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACATAGATTCTCTGTGTGACCTTACCATCCCCTACCTCTCTTGTCTTTC  698

seq1  CAGCGTCTCAGCATGCCATCTCCATGTGGTCTGGTGGCATCTTTCCTTTG  748
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGCGTCTCAGCATGCCATCTCCATGTGGTCTGGTGGCATCTTTCCTTTG  748

seq1  CATTCAACCTGTGGAATTTTAGGCATGCACCTGGATCCCATGCCTTCAGT  798
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATTCAACCTGTGGAATTTTAGGCATGCACCTGGATCCCATGCCTTCAGT  798

seq1  CTCCTCTGCTTTTCTACTCGGATGCTACCTCCTAATGGCTCTGCTTCTGC  848
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCCTCTGCTTTTCTACTCGGATGCTACCTCCTAATGGCTCTGCTTCTGC  848

seq1  ACTGTCATAGGTTAAGGCTGAGAAAGCATAAGAAAATGCGTGCTGGGTCT  898
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTGTCATAGGTTAAGGCTGAGAAAGCATAAGAAAATGCGTGCTGGGTCT  898

seq1  TGCTGGGTAGTCACTGTTGCATGCAGATCAGAGAGTGGGCGGACTGGTGA  948
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCTGGGTAGTCACTGTTGCATGCAGATCAGAGAGTGGGCGGACTGGTGA  948

seq1  ACTCTGTCTAAGGACTGTCTGTCAAGACTAGAATTC  984
      ||||||||||||||||||||||||||||||||||||
seq2  ACTCTGTCTAAGGACTGTCTGTCAAGACTAGAATTC  984