BAC Information

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BAC

Clone NameB6Ng01-066A07
Chromosome5 (Build37)
Map Location 47,442,381 - 47,629,051
singlet/doubletdoublet
Overlap genenone
Upstream geneEG666103
Downstream geneLOC100040865, LOC100040876, Slit2
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-066A07.bB6Ng01-066A07.g
ACCDH885321DH885322
length1,1621,053
definitionDH885321|Mus musculus domesticus DNA, BAC clone: B6Ng01-066A07, 5' end.DH885322|Mus musculus domesticus DNA, BAC clone: B6Ng01-066A07, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(47,442,381 - 47,443,081)(47,627,987 - 47,629,051)
sequence
gaattctaatagatcaccacagattaaagttggactgcaagaacaacaaa
aacaacagaaagcctacatattcatggagagtgaataactctctactcaa
tgataacttggtcagggaagaaatgaagaaagaaattgaagactttttaa
acatcaatgaaatttaaggcacagcatatccaaacttaatgggacacaag
gaaagcaatgttaaaaggaaacttcatagctcagagtgccattataaaga
aattgaagagattctacactagcaacttaagagcacacctgaaaactcta
gagcaaaaagaagcaaatacacccaagaggaaatagtcaatctcagggca
gaaatcaaccaattagaaacaaagagaacaatacaaagaatcaacaaaaa
caagagctttctttgaggcaatcaaaaaaaaaaatagataaacacttagt
ggaactaagtaaaaggcaaagattcagcatccaaattaacaaaatcagga
atgaaaagggagatataacaacagaaactgaggaaattaacaaaaaaaca
tcagatcttattacaaaagcctatactcaacaaaattagaaaatctagaa
gaaacagttattttctagacagatacatttaccaaagttaaattcagatc
agataaactatctaaacagtcccttaaacattaaataaacagaaggagtc
attcacatcttcccaacccagggtcagatggttttactgcagaattctac
cagaccttcaaagaagagctaagtcttcaatcattattccacaaaataga
gactttggagcaaaaatagaaggaaaggcttttccagggactagtccaac
ttaggatacatcccatgtgcaggcacaaaaccctgacacaattactgatg
ccatgttgtgcttgcagtcaggagtgtagcattcctcttgacttctccaa
taccttaccactgagatgtcttctctatttaaaaaagaaaaaagtcatcc
acattacacccttattttgttattcttgaacggtctagtcaaatcatatg
ctgctttcatagtatgatgggcagtaatgttcagatctgtcaagctttgt
ggcaggtagtattagaagttctttatgtatgggcccaataaagcctcatg
actagggttgaa
gaattcaggcaccatttagaacacttatcagttaattgctctttcttaag
tattatgcaaaattcactttttggttttggaccctggtgaaagagactga
ggtccctaatttacatatcaaagcagacttgggctctaggttctcccagc
attcctcagtccttacctgacataccctgccctcaactgtgaactttcca
gcccattgacagggttgcccttccctagatgctcttccatatataatcca
gatattttggtttccctgctcttcctcccaacccctgcccctggctcctc
tctatgaatgcatgctctttctctctttctctttcccctatacacccctt
tgtccccatggtaacttcctttggccagtgaactttcaagcctaagagct
ccttcccaataaatctgaatttaatataatctaatctggattgaattaac
tcatttaactggcagaaaaataacctatcagtaatcaatacacataggga
atgaaaatactgaaagaacatatctgatgttgtaattttagttagaagca
tctcagagctgaccaagaacttagaggtaatgagtatccaccttgtaggt
tttcttgctaccaagttctatgtgaaaatgacaattcaatagaccatcat
atttgagacagagaagcaggaccatcataagcatttatttataaaatcaa
ccttgaaagcaaaacagctatggaatatttagaaatatttcagccaagaa
agagattaaatactaaacttccatgttggctggggaatatagaggaatgt
gaggaaaaactatgtcttggtagatttaatatgccacagacaaacaatgg
aacaggagaatcaagtttgatttatctaaagacagtcttcaatatgtggg
ccaacatttggtacagaagagaatacaatgagtgaagatatgctctggtc
tctactgtacttggctttctactctataccagccctagacttgacttatg
ttttgagaaaagtagattttaaaaatttaaaaacatgtaaggagctaatt
caa
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr5_47442381_47443081
seq2: B6Ng01-066A07.b_508_1207

seq1  AAGGCAAAGATTCAGCATCCAAATTAACAAAATCAGGAATGAAAAGGGAG  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGGCAAAGATTCAGCATCCAAATTAACAAAATCAGGAATGAAAAGGGAG  50

seq1  ATATAACAACAGAAACTGAGGAAATTAACAAAAAAACATCAGATCTTATT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATATAACAACAGAAACTGAGGAAATTAACAAAAAAACATCAGATCTTATT  100

seq1  ACAAAAGCCTATACTCAACAAAATTAGAAAATCTAGAAGAAACAGTTATT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAAAAGCCTATACTCAACAAAATTAGAAAATCTAGAAGAAACAGTTATT  150

seq1  TTCTAGACAGATACATTTACCAAAGTTAAATTCAGATCAGATAAACTATC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTAGACAGATACATTTACCAAAGTTAAATTCAGATCAGATAAACTATC  200

seq1  TAAACAGTCCCTTAAACATTAAATAAACAGAAGGAGTCATTCACATCTTC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAACAGTCCCTTAAACATTAAATAAACAGAAGGAGTCATTCACATCTTC  250

seq1  CCAACCCAGGGTCAGATGGTTTTACTGCAGAATTCTACCAGACCTTCAAA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAACCCAGGGTCAGATGGTTTTACTGCAGAATTCTACCAGACCTTCAAA  300

seq1  GAAGAGCTAAGTCTTCAATCATTATTCCACAAAATAGAGAC-TTGGAGCA  349
      ||||||||||||||||||||||||||||||||||||||||| ||||||||
seq2  GAAGAGCTAAGTCTTCAATCATTATTCCACAAAATAGAGACTTTGGAGCA  350

seq1  AAAATAGAAGGAAAGGC-TTTCCAGGGACTAGTCCAACTTAGGATACATC  398
      ||||||||||||||||| ||||||||||||||||||||||||||||||||
seq2  AAAATAGAAGGAAAGGCTTTTCCAGGGACTAGTCCAACTTAGGATACATC  400

seq1  CCATGTGCAGGCACAAAACCCTGACACAATTACTGATGCCATGTTGTGCT  448
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCATGTGCAGGCACAAAACCCTGACACAATTACTGATGCCATGTTGTGCT  450

seq1  TGCAGTCAGGAGTGTAGCATTCCTCTTTGACTTCTTCCAATACCTTACCA  498
      ||||||||||||||||||||||||| |||||||| |||||||||||||||
seq2  TGCAGTCAGGAGTGTAGCATTCCTC-TTGACTTC-TCCAATACCTTACCA  498

seq1  CTGAGATGTCTTCTCTATTTAAAAAAGAAAAAAGTCATCCACATTACACC  548
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGAGATGTCTTCTCTATTTAAAAAAGAAAAAAGTCATCCACATTACACC  548

seq1  CTAATTTTGTTATTCTTGAACGGTCTAGTCAAATCATATGCTGCTTTCTA  598
      || ||||||||||||||||||||||||||||||||||||||||||||| |
seq2  CTTATTTTGTTATTCTTGAACGGTCTAGTCAAATCATATGCTGCTTTC-A  597

seq1  TAGTAATGATGGGCAGTAATGTTCAGTATCTGTCAAGCTATGTGCCAGGT  648
      |||| ||||||||||||||||||||| |||||||||||| |||| |||||
seq2  TAGT-ATGATGGGCAGTAATGTTCAG-ATCTGTCAAGCTTTGTGGCAGGT  645

seq1  AGTATTAGAAGTTCTTTATGTATGGGTCAAATAAAG-CTCATGACTA-GG  696
      |||||||||||||||||||||||||| | ||||||| |||||||||| ||
seq2  AGTATTAGAAGTTCTTTATGTATGGGCCCAATAAAGCCTCATGACTAGGG  695

seq1  TTGAA  701
      |||||
seq2  TTGAA  700

seq1: chr5_47627987_47629051
seq2: B6Ng01-066A07.g_70_1122 (reverse)

seq1  TTGAATTTATGCTCCTTACATGTTTTTTAAAATTTTTTAAAAATCTACTT  50
      |||||||   |||||||||||||||||  ||||||||  |||||||||||
seq2  TTGAATT--AGCTCCTTACATGTTTTT--AAATTTTT--AAAATCTACTT  44

seq1  TTATCTCAAAACATTAAGTCAAGTTCTAGGGCTGGTATAGAGTAGAAAGC  100
      |  |||||||||| ||||||||| ||||||||||||||||||||||||||
seq2  T--TCTCAAAACA-TAAGTCAAG-TCTAGGGCTGGTATAGAGTAGAAAGC  90

seq1  CAAGTAACAGTAGAGACCAGAGCATATCTTCACTCATTGTAATTCTCTTC  150
      ||||| |||||||||||||||||||||||||||||||||| |||||||||
seq2  CAAGT-ACAGTAGAGACCAGAGCATATCTTCACTCATTGT-ATTCTCTTC  138

seq1  TGTACCAAATGTTGGCCCACATATTTGAAGACTGTCTTTAGATAATTCAA  200
      ||||||||||||||||||||||| ||||||||||||||||||||| ||||
seq2  TGTACCAAATGTTGGCCCACATA-TTGAAGACTGTCTTTAGATAAATCAA  187

seq1  ACTTGATTCTCCTGTTCCATTGTTTGTCTGTGGCATATTGAATCTACCAA  250
      ||||||||||||||||||||||||||||||||||||||| ||||||||||
seq2  ACTTGATTCTCCTGTTCCATTGTTTGTCTGTGGCATATTAAATCTACCAA  237

seq1  GACATAGTTTTTCCTCACATTCCTCTATATTCCCCAGCCAACATGGAAGT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACATAGTTTTTCCTCACATTCCTCTATATTCCCCAGCCAACATGGAAGT  287

seq1  TTAGTATTTAATCTCTTTCTTGGCTG-AATATTTCTAAATATTCCATAGC  349
      |||||||||||||||||||||||||| |||||||||||||||||||||||
seq2  TTAGTATTTAATCTCTTTCTTGGCTGAAATATTTCTAAATATTCCATAGC  337

seq1  TGTTTTGCTTTCAAGGTTGATTTTATAAATAAATGCTTATGATGGTCCTG  399
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTTTTGCTTTCAAGGTTGATTTTATAAATAAATGCTTATGATGGTCCTG  387

seq1  CTTCTCTGTCTCAAATATGATGGTCTATTGAATTGTCATTTTCACATAGA  449
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTCTCTGTCTCAAATATGATGGTCTATTGAATTGTCATTTTCACATAGA  437

seq1  ACTTGGTAGCAAGAAAACCTACAAGGTGGATACTCATTACCTCTAAGTTC  499
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTTGGTAGCAAGAAAACCTACAAGGTGGATACTCATTACCTCTAAGTTC  487

seq1  TTGGTCAGCTCTGAGATGCTTCTAACTAAAATTACAACATCAGATATGTT  549
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGGTCAGCTCTGAGATGCTTCTAACTAAAATTACAACATCAGATATGTT  537

seq1  CTTTCAGTATTTTCATTCCCTATGTGTATTGATTACTGATAGGTTATTTT  599
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTTCAGTATTTTCATTCCCTATGTGTATTGATTACTGATAGGTTATTTT  587

seq1  TCTGCCAGTTAAATGAGTTAATTCAATCCAGATTAGATTATATTAAATTC  649
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTGCCAGTTAAATGAGTTAATTCAATCCAGATTAGATTATATTAAATTC  637

seq1  AGATTTATTGGGAAGGAGCTCTTAGGCTTGAAAGTTCACTGGCCAAAGGA  699
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGATTTATTGGGAAGGAGCTCTTAGGCTTGAAAGTTCACTGGCCAAAGGA  687

seq1  AGTTACCATGGGGACAAAGGGGTGTATAGGGGAAAGAGAAAGAGAGAAAG  749
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTTACCATGGGGACAAAGGGGTGTATAGGGGAAAGAGAAAGAGAGAAAG  737

seq1  AGCATGCATTCATAGAGAGGAGCCAGGGGCAGGGGTTGGGAGGAAGAGCA  799
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCATGCATTCATAGAGAGGAGCCAGGGGCAGGGGTTGGGAGGAAGAGCA  787

seq1  GGGAAACCAAAATATCTGGATTATATATGGAAGAGCATCTAGGGAAGGGC  849
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGAAACCAAAATATCTGGATTATATATGGAAGAGCATCTAGGGAAGGGC  837

seq1  AACCCTGTCAATGGGCTGGAAAGTTCACAGTTGAGGGCAGGGTATGTCAG  899
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACCCTGTCAATGGGCTGGAAAGTTCACAGTTGAGGGCAGGGTATGTCAG  887

seq1  GTAAGGACTGAGGAATGCTGGGAGAACCTAGAGCCCAAGTCTGCTTTGAT  949
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTAAGGACTGAGGAATGCTGGGAGAACCTAGAGCCCAAGTCTGCTTTGAT  937

seq1  ATGTAAATTAGGGACCTCAGTCTCTTTCACCAGGGTCCAAAACCAAAAAG  999
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGTAAATTAGGGACCTCAGTCTCTTTCACCAGGGTCCAAAACCAAAAAG  987

seq1  TGAATTTTGCATAATACTTAAGAAAGAGCAATTAACTGATAAGTGTTCTA  1049
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAATTTTGCATAATACTTAAGAAAGAGCAATTAACTGATAAGTGTTCTA  1037

seq1  AATGGTGCCTGAATTC  1065
      ||||||||||||||||
seq2  AATGGTGCCTGAATTC  1053