BAC Information

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BAC

Clone NameB6Ng01-066F14
Chromosome5 (Build37)
Map Location 72,161,638 - 72,309,252
singlet/doubletdoublet
Overlap geneGabrb1
Upstream geneGabrg1, Gabra2, LOC635092, 4930503B16Rik, Gabra4
Downstream geneLOC666545, Commd8, Atp10d, Corin, Nfxl1, Zar1, EG545758, Cnga1, LOC384275, Npal1, Txk, Tec
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-066F14.bB6Ng01-066F14.g
ACCDH885551DH885552
length986720
definitionDH885551|Mus musculus domesticus DNA, BAC clone: B6Ng01-066F14, 5' end.DH885552|Mus musculus domesticus DNA, BAC clone: B6Ng01-066F14, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(72,308,261 - 72,309,252)(72,161,638 - 72,162,357)
sequence
gaattccatagactgtcaaaggtccttttctgatggagataaaactaccc
acatgcaacttctaaagatttgatctctaatcatctcagtcatttcctgc
ttgtcaccatgtcccctttctatgtttctgattttgaccttcaaatgcag
tgaatgagaagtcacagtgtacagtctgtatgtggcacagattgcggtgt
gagcccagaactcatccaccccatctcaggacttatgagttagcacacca
tctatagaagcaattccagacaatgcaaccccttcattaagaccactgag
gtttaataattgcattcaaatgcatccatctccttccatctcaaggtcaa
ccccaacgttctttttctagcctttgttccacagccctggttccagacaa
ggagtttccaaactgcagtgagattactgagttggtttctaacccacctg
tttgtcaagacttttctctcagacctctggaaggtcctctgaggtcattt
tcatttctcaagcctagaatgaacaaatagaaaaggctcggagcagcatg
ggagttgagccaagagcagtactgtgagcatccatttgtccctccaccta
cgctctgagggggcagctgtgatgtctcgatgggatgagaaaagactcaa
tatgcatggcaatctggtgctgtgcccatgggaccatcaaaggaaaaata
gaccgtgtgcagtctttctccctagagaaaataagctttgtgcagttctt
gtgtcacaaatgcaggttgccatcagcaaccagggtaccccctttatcag
aacagttgcagaaagtgaggcaggatagaagagcagaaaaaaaatcttag
gaaccggaaaaggagaaagagcccctcatcctgtaatccagttggagtcc
ttgctaatgacgtaaaatggattccagtgcaacacttttctaggatcaca
ccagaaccctagagagatagagggagggagggaaga
gaattctattggctcacctccaagttaatggtgcaactaattgtattgcc
taatcttaattgtcaatttgacacctctgggaagaggaaaccccagttga
agtattgcttccatcagattggtcgctcagtatgtctgtggatatttttc
tgatttctcattgatgtcagagggctcagcccattgtaggttggccgttc
ttaggaaagtggctctggggttgcataagaaaggtagctgaagttgagtc
tgggaataagcctggaagcagcattgctctgtagtccctgcttaaagatt
ctgccttgactcccagcattgcttctctcagtggtgaaatgcagaccttt
aagatgaaataaactctttcttccaaagatgctctggtcattgtacttat
cacagcaatggaaaggtatacagaactctataaaccatataataaaaaaa
acaattttacctttatttgtttgattggaatgtctaccatttgcattttt
tggttagcattatgcccatctgatatcgaacacctatctagcttttctat
taactgctttcaaatattaattctagttattttaaattatgtatactata
ttcagatatgatcacttgaatgtttgttatctcttgtttgcacagtcaat
cttcctgattatttctcaatttttactacttggttaaaagcagatacatt
gggtggtgtgggagagatga
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr5_72308261_72309252
seq2: B6Ng01-066F14.b_45_1030 (reverse)

seq1  TCTTCCCCTCCCTCCCTCTATCTCTCTAGGGGTTTCTGGTGTGATTCCTA  50
      |||| ||||||||||||||||||||||||||  ||||||||||| |||||
seq2  TCTT-CCCTCCCTCCCTCTATCTCTCTAGGG--TTCTGGTGTGA-TCCTA  46

seq1  GAAAAGTGTTGCACTGGAATCCATTTTTACGTCATTAGCAAGGACTCCAA  100
      ||||||||||||||||||||||| ||||||||||||||||||||||||||
seq2  GAAAAGTGTTGCACTGGAATCCA-TTTTACGTCATTAGCAAGGACTCCAA  95

seq1  CTGGATTACAGGATGAGGGGCTTCTTTCTCCTTTTCCGGTTCCTAAGATT  150
      ||||||||||||||||||||| ||||||||||||||||||||||||||||
seq2  CTGGATTACAGGATGAGGGGC-TCTTTCTCCTTTTCCGGTTCCTAAGATT  144

seq1  TTTTTTCTGCTCTTCTATCCTGCCTCACTTTCTGCAACTGTTCTGATAAA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTTTCTGCTCTTCTATCCTGCCTCACTTTCTGCAACTGTTCTGATAAA  194

seq1  GGGGGTACCCTGGTTGCTGATGGCAACCTGCATTTGTGACACAAGAACTG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGGGTACCCTGGTTGCTGATGGCAACCTGCATTTGTGACACAAGAACTG  244

seq1  CACAAAGCTTATTTTCTCTAGGGAGAAAGACTGCACACGGTCTATTTTTC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACAAAGCTTATTTTCTCTAGGGAGAAAGACTGCACACGGTCTATTTTTC  294

seq1  CTTTGATGGTCCCATGGGCACAGCACCAGATTGCCATGCATATTGAGTCT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTTGATGGTCCCATGGGCACAGCACCAGATTGCCATGCATATTGAGTCT  344

seq1  TTTCTCATCCCATCGAGACATCACAGCTGCCCCCTCAGAGCGTAGGTGGA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTCTCATCCCATCGAGACATCACAGCTGCCCCCTCAGAGCGTAGGTGGA  394

seq1  GGGACAAATGGATGCTCACAGTACTGCTCTTGGCTCAACTCCCATGCTGC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGACAAATGGATGCTCACAGTACTGCTCTTGGCTCAACTCCCATGCTGC  444

seq1  TCCGAGCCTTTTCTATTTGTTCATTCTAGGCTTGAGAAATGAAAATGACC  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCGAGCCTTTTCTATTTGTTCATTCTAGGCTTGAGAAATGAAAATGACC  494

seq1  TCAGAGGACCTTCCAGAGGTCTGAGAGAAAAGTCTTGACAAACAGGTGGG  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAGAGGACCTTCCAGAGGTCTGAGAGAAAAGTCTTGACAAACAGGTGGG  544

seq1  TTAGAAACCAACTCAGTAATCTCACTGCAGTTTGGAAACTCCTTGTCTGG  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAGAAACCAACTCAGTAATCTCACTGCAGTTTGGAAACTCCTTGTCTGG  594

seq1  AACCAGGGCTGTGGAACAAAGGCTAGAAAAAGAACGTTGGGGTTGACCTT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACCAGGGCTGTGGAACAAAGGCTAGAAAAAGAACGTTGGGGTTGACCTT  644

seq1  GAGATGGAAGGAGATGGATGCATTTGAATGCAATTATTAAACCTCAGTGG  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGATGGAAGGAGATGGATGCATTTGAATGCAATTATTAAACCTCAGTGG  694

seq1  TCTTAATGAAGGGGTTGCATTGTCTGGAATTGCTTCTATAGATGGTGTGC  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTTAATGAAGGGGTTGCATTGTCTGGAATTGCTTCTATAGATGGTGTGC  744

seq1  TAACTCATAAGTCCTGAGATGGGGTGGATGAGTTCTGGGCTCACACCGCA  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAACTCATAAGTCCTGAGATGGGGTGGATGAGTTCTGGGCTCACACCGCA  794

seq1  ATCTGTGCCACATACAGACTGTACACTGTGACTTCTCATTCACTGCATTT  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCTGTGCCACATACAGACTGTACACTGTGACTTCTCATTCACTGCATTT  844

seq1  GAAGGTCAAAATCAGAAACATAGAAAGGGGACATGGTGACAAGCAGGAAA  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAGGTCAAAATCAGAAACATAGAAAGGGGACATGGTGACAAGCAGGAAA  894

seq1  TGACTGAGATGATTAGAGATCAAATCTTTAGAAGTTGCATGTGGGTAGTT  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGACTGAGATGATTAGAGATCAAATCTTTAGAAGTTGCATGTGGGTAGTT  944

seq1  TTATCTCCATCAGAAAAGGACCTTTGACAGTCTATGGAATTC  992
      ||||||||||||||||||||||||||||||||||||||||||
seq2  TTATCTCCATCAGAAAAGGACCTTTGACAGTCTATGGAATTC  986

seq1: chr5_72161638_72162357
seq2: B6Ng01-066F14.g_70_789

seq1  GAATTCTATTGGCTCACCTCCAAGTTAATGGTGCAACTAATTGTATTGCC  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTATTGGCTCACCTCCAAGTTAATGGTGCAACTAATTGTATTGCC  50

seq1  TAATCTTAATTGTCAATTTGACACCTCTGGGAAGAGGAAACCCCAGTTGA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAATCTTAATTGTCAATTTGACACCTCTGGGAAGAGGAAACCCCAGTTGA  100

seq1  AGTATTGCTTCCATCAGATTGGTCGCTCAGTATGTCTGTGGATATTTTTC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTATTGCTTCCATCAGATTGGTCGCTCAGTATGTCTGTGGATATTTTTC  150

seq1  TGATTTCTCATTGATGTCAGAGGGCTCAGCCCATTGTAGGTTGGCCGTTC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGATTTCTCATTGATGTCAGAGGGCTCAGCCCATTGTAGGTTGGCCGTTC  200

seq1  TTAGGAAAGTGGCTCTGGGGTTGCATAAGAAAGGTAGCTGAAGTTGAGTC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAGGAAAGTGGCTCTGGGGTTGCATAAGAAAGGTAGCTGAAGTTGAGTC  250

seq1  TGGGAATAAGCCTGGAAGCAGCATTGCTCTGTAGTCCCTGCTTAAAGATT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGGAATAAGCCTGGAAGCAGCATTGCTCTGTAGTCCCTGCTTAAAGATT  300

seq1  CTGCCTTGACTCCCAGCATTGCTTCTCTCAGTGGTGAAATGCAGACCTTT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGCCTTGACTCCCAGCATTGCTTCTCTCAGTGGTGAAATGCAGACCTTT  350

seq1  AAGATGAAATAAACTCTTTCTTCCAAAGATGCTCTGGTCATTGTACTTAT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGATGAAATAAACTCTTTCTTCCAAAGATGCTCTGGTCATTGTACTTAT  400

seq1  CACAGCAATGGAAAGGTATACAGAACTCTATAAACCATATAATAAAAAAA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACAGCAATGGAAAGGTATACAGAACTCTATAAACCATATAATAAAAAAA  450

seq1  ACAATTTTACCTTTATTTGTTTGATTGGAATGTCTACCATTTGCATTTTT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAATTTTACCTTTATTTGTTTGATTGGAATGTCTACCATTTGCATTTTT  500

seq1  TGGTTAGCATTATGCCCATCTGATATCGAACACCTATCTAGCTTTTCTAT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGTTAGCATTATGCCCATCTGATATCGAACACCTATCTAGCTTTTCTAT  550

seq1  TAACTGCTTTCAAATATTAATTCTAGTTATTTTAAATTATGTATACTATA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAACTGCTTTCAAATATTAATTCTAGTTATTTTAAATTATGTATACTATA  600

seq1  TTCAGATATGATCACTTGAATGTTTGTTATCTCTTGTTTGCACAGTCAAT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCAGATATGATCACTTGAATGTTTGTTATCTCTTGTTTGCACAGTCAAT  650

seq1  CTTCCTGATTATTTCTCAATTTTTACTACTTGGTTAAAAGCAGATACATT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTCCTGATTATTTCTCAATTTTTACTACTTGGTTAAAAGCAGATACATT  700

seq1  GGGTGGTGTGGGAGAGATGA  720
      ||||||||||||||||||||
seq2  GGGTGGTGTGGGAGAGATGA  720