BAC Information

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BAC

Clone NameB6Ng01-066H02
Chromosome5 (Build37)
Map Location 66,450,300 - 66,663,171
singlet/doubletdoublet
Overlap geneBC013481, LOC626714, LOC666854, LOC100042394, Nsun7
Upstream geneTmem156, Klhl5, Wdr19, Rfc1, Klb, Rpl9, Lias, Ugdh, 1110003E01Rik, 4930589O11Rik, Hip2, 9030416H16Rik, 1700022K14Rik, LOC384261, B3bp, LOC100041809, Rhoh, LOC626641, EG666827, Chrna9, 9130230L23Rik
Downstream geneApbb2, Uchl1, LOC100041876, 3732412D22Rik, LOC624662, Phox2b, Tmem33
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-066H02.bB6Ng01-066H02.g
ACCDH885623DH885624
length1,003655
definitionDH885623|Mus musculus domesticus DNA, BAC clone: B6Ng01-066H02, 5' end.DH885624|Mus musculus domesticus DNA, BAC clone: B6Ng01-066H02, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(66,450,300 - 66,451,303)(66,662,610 - 66,663,171)
sequence
gaattccaaaagctttgctgtaactaccgtttgcatcagtgcatgactaa
gatatgagagaaagaaactgttcctatgcatgtgtgcatgcgcacacagc
attgaagtattagcctgcaccaaacactggctcggaagccacatagccgg
gttaatagtgttagcaacagctggccatgaacctaattacaccccactgg
aaaggacacgggatatacagaagttcccacagacctctttcctccagtta
gactgtcaaataccccaacatagcactcagcataaaatacagtatatatc
ggagcaaagtataaataaagttggagatatttcatcttaaaatttaaaaa
tggagccaggagttagttcagtggcatagtgtttgcataccttgatcaaa
acactggtttagatcttcagcacaccaaacagacaagaccatggggggag
ctttgacctcaaaggtggtcctctaaaccatcacatcacactgggtggat
ttatgtaaaaattgaaactctgacccggcagactagctgtcctagcttgc
tttttgttgctgtgataaacaccaaaattaacttagggaggaaagggctt
atttggcttacacatccacgtcacagtccattatggagccatgtcagggc
aagaactcaagaagaagctggaagcagaaactgaggcagaccatggaggg
atgctttccatggccggctttcttggcctgctttcttatacaattcagga
ccaccaggccaacaaggacacagcaccgtgggctgggccttccacattat
tgtggtggtttatatgagaaggggccccataggccatttcatataagaat
gctcagtccacagtggaactgttaggaaagtttaggtgtggccttggcaa
gtagtggtcacttcaggtgatatgaggtttcaaaagcccaggtagttgtc
cttctctgccttgtgcttgtgggtcaaggggtgagctcctcagctcttct
cca
gaattctttgtttggctctgtaccccattttttaatagggttggtttttt
ttctggagtccaacttcttgagttctttatatatattggatattagccct
ctatcggatttaggattggtaaagatcttttcccaatctgttggtggcct
tttggtcttattgacagagtcctttgccttacagaagctttgaattttat
gaggtcccatttgttgattcttgatcttacagcacaagccattggtcagg
aatctttcccctgtgcccatatcttcgaggctgtcctggaactctctctc
tgtgtgtgtagatcaggctggcctcaaactcacagagatccacctgcctc
tgccccctgggtgctgggattaaaggcatgtttcaccactgcccggcagg
attggtattttgaaatgagatactgtgccttggtttccatgtttcttgtg
ggtttgcactaggacttgcccatcttcattaaattgttgattaatggggc
aggcagagttggttcttatttcaagtcaccatgttttcaagtagtggagg
aatttgtagagtttatgagagactgggtgtagcagggttgagatgatgcc
tttcagtaccaggacctgtcccctgttctcccctaaacagttgagtattg
tctga
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr5_66450300_66451303
seq2: B6Ng01-066H02.b_44_1046

seq1  GAATTCCAAAAGCTTTGCTGTAACTACCGTTTGCATCAGTGCATGACTAA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCCAAAAGCTTTGCTGTAACTACCGTTTGCATCAGTGCATGACTAA  50

seq1  GATATGAGAGAAAGAAACTGTTCCTATGCATGTGTGCATGCGCACACAGC  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATATGAGAGAAAGAAACTGTTCCTATGCATGTGTGCATGCGCACACAGC  100

seq1  ATTGAAGTATTAGCCTGCACCAAACACTGGCTCGGAAGCCACATAGCCGG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTGAAGTATTAGCCTGCACCAAACACTGGCTCGGAAGCCACATAGCCGG  150

seq1  GTTAATAGTGTTAGCAACAGCTGGCCATGAACCTAATTACACCCCACTGG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTAATAGTGTTAGCAACAGCTGGCCATGAACCTAATTACACCCCACTGG  200

seq1  AAAGGACACGGGATATACAGAAGTTCCCACAGACCTCTTTCCTCCAGTTA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAGGACACGGGATATACAGAAGTTCCCACAGACCTCTTTCCTCCAGTTA  250

seq1  GACTGTCAAATACCCCAACATAGCACTCAGCATAAAATACAGTATATATC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACTGTCAAATACCCCAACATAGCACTCAGCATAAAATACAGTATATATC  300

seq1  GGAGCAAAGTATAAATAAAGTTGGAGATATTTCATCTTAAAATTTAAAAA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAGCAAAGTATAAATAAAGTTGGAGATATTTCATCTTAAAATTTAAAAA  350

seq1  TGGAGCCAGGAGTTAGTTCAGTGGCATAGTGTTTGCATACCTTGATCAAA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGAGCCAGGAGTTAGTTCAGTGGCATAGTGTTTGCATACCTTGATCAAA  400

seq1  ACACTGGTTTAGATCTTCAGCACACCAAACAGACAAGACCATGGGGGGAG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACACTGGTTTAGATCTTCAGCACACCAAACAGACAAGACCATGGGGGGAG  450

seq1  CTTTGACCTCAAAGGTGGTCCTCTAAACCATCACATCACACTGGGTGGAT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTTGACCTCAAAGGTGGTCCTCTAAACCATCACATCACACTGGGTGGAT  500

seq1  TTATGTAAAAATTGAAACTCTGACCCGGCAGACTAGCTGTCCTAGCTTGC  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTATGTAAAAATTGAAACTCTGACCCGGCAGACTAGCTGTCCTAGCTTGC  550

seq1  TTTTTGTTGCTGTGATAAACACCAAAATTAACTTAGGGAGGAAAGGGCTT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTTGTTGCTGTGATAAACACCAAAATTAACTTAGGGAGGAAAGGGCTT  600

seq1  ATTTGGCTTACACATCCACGTCACAGTCCATTATGGAGCCATGTCAGGGC  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTGGCTTACACATCCACGTCACAGTCCATTATGGAGCCATGTCAGGGC  650

seq1  AAGAACTCAAGAAGAAGCTGGAAGCAGAAACTGAGGCAGACCATGGAGGG  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGAACTCAAGAAGAAGCTGGAAGCAGAAACTGAGGCAGACCATGGAGGG  700

seq1  ATGCTTTCCATGGCCGGCTTTCTTGGCCTGCTTTCTTATACAATTCAGGA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGCTTTCCATGGCCGGCTTTCTTGGCCTGCTTTCTTATACAATTCAGGA  750

seq1  CCACCAGGCCAACAAGGACACAGCACCGTGGGCTGGGCCTTCCACATTAT  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCACCAGGCCAACAAGGACACAGCACCGTGGGCTGGGCCTTCCACATTAT  800

seq1  TGTGGTGGTTTATATGAGAAGGGGCCCCATAGGCCATTTCATATAAGAAT  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTGGTGGTTTATATGAGAAGGGGCCCCATAGGCCATTTCATATAAGAAT  850

seq1  GCTCAGTCCACAGTGGAACTGTTTAGGAAAGTTTAGGTGTGGCCTTGGCA  900
      ||||||||||||||||||||| ||||||||||||||||||||||||||||
seq2  GCTCAGTCCACAGTGGAACTG-TTAGGAAAGTTTAGGTGTGGCCTTGGCA  899

seq1  GGTAGTGGTCACTTCAGGTGGATTATGAGGTTTCAAAAGCCCAGTCAG-T  949
       |||||||||||||||||||   |||||||||||||||||||||  || |
seq2  AGTAGTGGTCACTTCAGGTG--ATATGAGGTTTCAAAAGCCCAGGTAGTT  947

seq1  GTCCTTCTCTGCCTTGTGCTTGTGGGTC-AGGTGTGAGCT-CTCAGCTCC  997
      |||||||||||||||||||||||||||| ||| ||||||| ||||||| |
seq2  GTCCTTCTCTGCCTTGTGCTTGTGGGTCAAGGGGTGAGCTCCTCAGCT-C  996

seq1  TTCTCCA  1004
      |||||||
seq2  TTCTCCA  1003

seq1: chr5_66662610_66663171
seq2: B6Ng01-066H02.g_160_721 (reverse)

seq1  TCAGACAATACTCAACTGTTTAGGGGAGAACAGGGGACAGGTCCTGGTGC  50
      |||||||||||||||||||||||||||||||||||||||||||||||| |
seq2  TCAGACAATACTCAACTGTTTAGGGGAGAACAGGGGACAGGTCCTGGTAC  50

seq1  TGAAAGGCATCATCTCAACCCTGCTACACCCAGTCTCTCATAAACTCTAC  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAAAGGCATCATCTCAACCCTGCTACACCCAGTCTCTCATAAACTCTAC  100

seq1  AAATTCCTCCACTACTTGAAAACATGGTGACTTGAAATAAGAACCAACTC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATTCCTCCACTACTTGAAAACATGGTGACTTGAAATAAGAACCAACTC  150

seq1  TGCCTGCCCCATTAATCAACAATTTAATGAAGATGGGCAAGTCCTAGTGC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCCTGCCCCATTAATCAACAATTTAATGAAGATGGGCAAGTCCTAGTGC  200

seq1  AAACCCACAAGAAACATGGAAACCAAGGCACAGTATCTCATTTCAAAATA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAACCCACAAGAAACATGGAAACCAAGGCACAGTATCTCATTTCAAAATA  250

seq1  CCAATCCTGCCGGGCAGTGGTGAAACATGCCTTTAATCCCAGCACCCAGG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAATCCTGCCGGGCAGTGGTGAAACATGCCTTTAATCCCAGCACCCAGG  300

seq1  GGGCAGAGGCAGGTGGATCTCTGTGAGTTTGAGGCCAGCCTGATCTACAC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGCAGAGGCAGGTGGATCTCTGTGAGTTTGAGGCCAGCCTGATCTACAC  350

seq1  ACACAGAGAGAGAGTTCCAGGACAGCCTCGAAGATATGGGCACAGGGGAA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACACAGAGAGAGAGTTCCAGGACAGCCTCGAAGATATGGGCACAGGGGAA  400

seq1  AGATTCCTGACCAATGGCTTGTGCTGTAAGATCAAGAATCAACAAATGGG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGATTCCTGACCAATGGCTTGTGCTGTAAGATCAAGAATCAACAAATGGG  450

seq1  ACCTCATAAAATTCAAAGCTTCTGTAAGGCAAAGGACTCTGTCAATAAGA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCTCATAAAATTCAAAGCTTCTGTAAGGCAAAGGACTCTGTCAATAAGA  500

seq1  CCAAAAGGCCACCAACAGATTGGGAAAAGATCTTTACCAATCCTAAATCC  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAAAAGGCCACCAACAGATTGGGAAAAGATCTTTACCAATCCTAAATCC  550

seq1  GATAGAGGGCTA  562
      ||||||||||||
seq2  GATAGAGGGCTA  562