BAC Information

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BAC

Clone NameB6Ng01-066I18
Chromosome5 (Build37)
Map Location 52,819,231 - 52,966,088
singlet/doubletdoublet
Overlap geneLOC100041805, Lgi2
Upstream genePpargc1a, Dhx15, Sod3, Gm447
Downstream geneLOC545750, D5Ertd135e, Pi4k2b, Zcchc4, Anapc4, Slc34a2, 2310045A20Rik, 1810013D10Rik, LOC100041198, LOC100041911, Rbpj
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-066I18.bB6Ng01-066I18.g
ACCDH885696DH885697
length1,0721,018
definitionDH885696|Mus musculus domesticus DNA, BAC clone: B6Ng01-066I18, 5' end.DH885697|Mus musculus domesticus DNA, BAC clone: B6Ng01-066I18, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(52,965,015 - 52,966,088)(52,819,231 - 52,820,250)
sequence
gaattctcttaattacactgattgtactccattctgaagtgcccagaaaa
tgaagattctgggtgtgtggagagtgccagaaataagctttgctgacttc
ttatctgaagaattcttcctgtaagacataggtgaagtcaagaggagaca
cccatagctaggcctacagggagcagtggaaaacagagtccatggtctca
gttcagaaatgtgtttctgccatcctcgccatggctcttggcttaagtct
gagagctgtttcttcatgccaatcaagtctagtctttcgaacacttacca
catattgcctatggcattttactcttagcattctgaggcttctctagcct
ccatttctaaagtcttctgcattcctcgtgcaacccacttataaagccca
ctaaccatagagtcagatttaccacagcaacaaccccactcctggtacta
tccatagagtcagatttaccacagcaacaaccccactcctggtactatat
ttttgcattagctatttttcttggcactctgacaaaatacctgctggaag
caactcaaagaaaggaaagtttattatggcccatggctccagagggattt
ccatttaccagaatgggaaaggtcttactgtaagcagatcaatctatggt
gagtagtggggcagctgcctctatggtgagaatgggggcagctgtgcctg
tgttgagtaattcgggcagttgtatctgtggcaaggagtagggtatgtgg
ctggcctcctcacatttttggcagaccaggaaagcaaagacttaggtcgg
aagtatcggcagtttacagccctttcaaggtccaaccctagtaatttact
tcaaccagccaaggctcatctcctaaatgctccagagctttctaaatagt
tccacaaactggagaccaaatgctcatagcagagcctttaggggacattt
tagatctgaaccatgatataaggagacccaatagataagcagtctttggg
gttcatgtggggagcctttcagaggattccctcagaaacattttgatgtg
gttccggccagctgatcagagc
ccacataaaacgccagtatggtaaggatgttggtaatcccagtgttgggg
aggctgaaatagagaagtcctgcagctctctggccagtcagtcaagacaa
tgagagagtgccaggtcccaggagagacccagtctaagaacaagaacggc
tcccaaggcacacacccaagattgacctctgagctccacatgcacatatg
aacacacacacacacacactaacacacacattctctctctctctctctct
ctctctctctctctctctctctcacacacacacacacacacacacacaca
cacacactaacacacacattctctctccctcccccctctctctctctcac
acacacacacactatatgaataaataaatgatgtgtacgaggaagcccta
taacatacctctcaatttgcggacccatcagaataggaagtcaaaagtaa
aacgaaaataaaatgagacagaaaagaaaagcaaatccctgacttcatca
ggaaagagaggaagaaatgcagagcacattctgaaagcacccccaagctg
tgtcacactaggaagtttaatctctgggccccaggaattcatagcttccg
taggacaaagtactagaaaaagcaaaactacatttaaacaatagattccc
accccacatttgatgaggcgtcagtgttcttaaggcctatgattgatggc
aaatttaattgcagttcttactgtgttgctttggtccagtggcaatgcct
atgttcacagtaattgaaggaacttgattagcgagggcccccgttcagag
agactgccaaagctttagcctccattacattggcaggtttcttacttcca
aacaccagccactgagagcatggtctgtgcatagtctgggggcagcacag
aacttcagcagcctcctctaccccagttttctcctgtattcagaggatgt
cctctccaggcaaacctattgactgctttgggggaagggcgggtacaacg
aagattagcctgagttaa
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr5_52965015_52966088
seq2: B6Ng01-066I18.b_47_1118 (reverse)

seq1  GCTCTTGATCAGCTGGCCCGAACCACATCAAAATGTGTTCTGAGGGAATC  50
      |||| ||||||||||||| ||||||||||||||||| |||||||||||||
seq2  GCTC-TGATCAGCTGGCCGGAACCACATCAAAATGT-TTCTGAGGGAATC  48

seq1  CTCTGAAAGGCT-CCCACATGAACCCCAAAGACTGCTTATCTATTGGGTC  99
      |||||||||||| |||||||||||||||||||||||||||||||||||||
seq2  CTCTGAAAGGCTCCCCACATGAACCCCAAAGACTGCTTATCTATTGGGTC  98

seq1  TCCTTATATCATGGTTCAGATCTAAAATGTCCCCTAAAGGCTCCTGCTAT  149
      |||||||||||||||||||||||||||||||||||||||||| |||||||
seq2  TCCTTATATCATGGTTCAGATCTAAAATGTCCCCTAAAGGCT-CTGCTAT  147

seq1  GAGCATTTGGTCTCCAGTTTGTGGAACTATTTAGAAAGCTCTGGAGCATT  199
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGCATTTGGTCTCCAGTTTGTGGAACTATTTAGAAAGCTCTGGAGCATT  197

seq1  TAGGAGATGAGCCTTGGCTGGTTGAAGTAAATTACTAGGGTTGGACCTTG  249
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGGAGATGAGCCTTGGCTGGTTGAAGTAAATTACTAGGGTTGGACCTTG  247

seq1  AAAGGGCTGTAAACTGCCGATACTTCCGACCTAAGTCTTTGCTTTCCTGG  299
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAGGGCTGTAAACTGCCGATACTTCCGACCTAAGTCTTTGCTTTCCTGG  297

seq1  TCTGCCAAAAATGTGAGGAGGCCAGCCACATACCCTACTCCTTGCCACAG  349
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTGCCAAAAATGTGAGGAGGCCAGCCACATACCCTACTCCTTGCCACAG  347

seq1  ATACAACTGCCCGAATTACTCAACACAGGCACAGCTGCCCCCATTCTCAC  399
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATACAACTGCCCGAATTACTCAACACAGGCACAGCTGCCCCCATTCTCAC  397

seq1  CATAGAGGCAGCTGCCCCACTACTCACCATAGATTGATCTGCTTACAGTA  449
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATAGAGGCAGCTGCCCCACTACTCACCATAGATTGATCTGCTTACAGTA  447

seq1  AGACCTTTCCCATTCTGGTAAATGGAAATCCCTCTGGAGCCATGGGCCAT  499
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGACCTTTCCCATTCTGGTAAATGGAAATCCCTCTGGAGCCATGGGCCAT  497

seq1  AATAAACTTTCCTTTCTTTGAGTTGCTTCCAGCAGGTATTTTGTCAGAGT  549
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATAAACTTTCCTTTCTTTGAGTTGCTTCCAGCAGGTATTTTGTCAGAGT  547

seq1  GCCAAGAAAAATAGCTAATGCAAAAATATAGTACCAGGAGTGGGGTTGTT  599
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCAAGAAAAATAGCTAATGCAAAAATATAGTACCAGGAGTGGGGTTGTT  597

seq1  GCTGTGGTAAATCTGACTCTATGGATAGTACCAGGAGTGGGGTTGTTGCT  649
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTGTGGTAAATCTGACTCTATGGATAGTACCAGGAGTGGGGTTGTTGCT  647

seq1  GTGGTAAATCTGACTCTATGGTTAGTGGGCTTTATAAGTGGGTTGCACGA  699
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGGTAAATCTGACTCTATGGTTAGTGGGCTTTATAAGTGGGTTGCACGA  697

seq1  GGAATGCAGAAGACTTTAGAAATGGAGGCTAGAGAAGCCTCAGAATGCTA  749
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAATGCAGAAGACTTTAGAAATGGAGGCTAGAGAAGCCTCAGAATGCTA  747

seq1  AGAGTAAAATGCCATAGGCAATATGTGGTAAGTGTTCGAAAGACTAGACT  799
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAGTAAAATGCCATAGGCAATATGTGGTAAGTGTTCGAAAGACTAGACT  797

seq1  TGATTGGCATGAAGAAACAGCTCTCAGACTTAAGCCAAGAGCCATGGCGA  849
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGATTGGCATGAAGAAACAGCTCTCAGACTTAAGCCAAGAGCCATGGCGA  847

seq1  GGATGGCAGAAACACATTTCTGAACTGAGACCATGGACTCTGTTTTCCAC  899
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGATGGCAGAAACACATTTCTGAACTGAGACCATGGACTCTGTTTTCCAC  897

seq1  TGCTCCCTGTAGGCCTAGCTATGGGTGTCTCCTCTTGACTTCACCTATGT  949
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCTCCCTGTAGGCCTAGCTATGGGTGTCTCCTCTTGACTTCACCTATGT  947

seq1  CTTACAGGAAGAATTCTTCAGATAAGAAGTCAGCAAAGCTTATTTCTGGC  999
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTACAGGAAGAATTCTTCAGATAAGAAGTCAGCAAAGCTTATTTCTGGC  997

seq1  ACTCTCCACACACCCAGAATCTTCATTTTCTGGGCACTTCAGAATGGAGT  1049
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTCTCCACACACCCAGAATCTTCATTTTCTGGGCACTTCAGAATGGAGT  1047

seq1  ACAATCAGTGTAATTAAGAGAATTC  1074
      |||||||||||||||||||||||||
seq2  ACAATCAGTGTAATTAAGAGAATTC  1072

seq1: chr5_52819231_52820250
seq2: B6Ng01-066I18.g_80_1096

seq1  CCACATAAAACGCCAGTATGGTAAGGATGTTGGTAATCCCAGTGTTGGGG  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCACATAAAACGCCAGTATGGTAAGGATGTTGGTAATCCCAGTGTTGGGG  50

seq1  AGGCTGAAATAGAGAAGTCCTGCAGCTCTCTGGCCAGTCAGTCAAGACAA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGCTGAAATAGAGAAGTCCTGCAGCTCTCTGGCCAGTCAGTCAAGACAA  100

seq1  TGAGAGAGTGCCAGGTCCCAGGAGAGACCCAGTCTAAGAACAAGAACGGC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAGAGAGTGCCAGGTCCCAGGAGAGACCCAGTCTAAGAACAAGAACGGC  150

seq1  TCCCAAGGCACACACCCAAGATTGACCTCTGAGCTCCACATGCACATATG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCCAAGGCACACACCCAAGATTGACCTCTGAGCTCCACATGCACATATG  200

seq1  AACACACACACACACACACTAACACACACATTCTCTCTCTCTCTCTCTCT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACACACACACACACACACTAACACACACATTCTCTCTCTCTCTCTCTCT  250

seq1  CTCTCTCTCTCTCTCTCTCTCTCACACACACACACACACACACACACACA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCTCTCTCTCTCTCTCTCTCTCACACACACACACACACACACACACACA  300

seq1  CACACACTAACACACACATTCTCTCTCCCTCCCCCCTCTCTCTCTCTCAC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACACACTAACACACACATTCTCTCTCCCTCCCCCCTCTCTCTCTCTCAC  350

seq1  ACACACACACACTATATGAATAAATAAATGATGTGTACGAGGAAGCCCTA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACACACACACACTATATGAATAAATAAATGATGTGTACGAGGAAGCCCTA  400

seq1  TAACATACCTCTCAATTTGCGGACCCATCAGAATAGGAAGTCAAAAGTAA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAACATACCTCTCAATTTGCGGACCCATCAGAATAGGAAGTCAAAAGTAA  450

seq1  AACGAAAATAAAATGAGACAGAAAAGAAAAGCAAATCCCTGACTTCATCA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACGAAAATAAAATGAGACAGAAAAGAAAAGCAAATCCCTGACTTCATCA  500

seq1  GGAAAGAGAGGAAGAAATGCAGAGCACATTCTGAAAGCACCCCCAAGCTG  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAAAGAGAGGAAGAAATGCAGAGCACATTCTGAAAGCACCCCCAAGCTG  550

seq1  TGTCACACTAGGAAGTTTAATCCCTGGGCCCCAGGAATTCATAGCTTCCG  600
      |||||||||||||||||||||| |||||||||||||||||||||||||||
seq2  TGTCACACTAGGAAGTTTAATCTCTGGGCCCCAGGAATTCATAGCTTCCG  600

seq1  TAGGACAAAGTACTAGAAAAAGCAAAACTACATTTAAACAATAGATTCCC  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGGACAAAGTACTAGAAAAAGCAAAACTACATTTAAACAATAGATTCCC  650

seq1  ACCCCACATTTGATGAGGCGTCAGTGTTCTTAAGGCCTATGATTGATGGC  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCCCACATTTGATGAGGCGTCAGTGTTCTTAAGGCCTATGATTGATGGC  700

seq1  AAATTTAATTGCAGTTCTTACTGTGTTGCTTTGGTCCAGTGGCAATGCCT  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATTTAATTGCAGTTCTTACTGTGTTGCTTTGGTCCAGTGGCAATGCCT  750

seq1  ATGTTCACAGTAATTGAAGGAAACTTGATTAGCGAGGGCCCCCGTTCAGA  800
      |||||||||||||||||||| |||||||||||||||||||||||||||||
seq2  ATGTTCACAGTAATTGAAGG-AACTTGATTAGCGAGGGCCCCCGTTCAGA  799

seq1  GAGACTGCCAAAGCTTTAGCCTCCATTACATTGGCAGGTTTCTTACTTCC  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGACTGCCAAAGCTTTAGCCTCCATTACATTGGCAGGTTTCTTACTTCC  849

seq1  AAACACCAGCCACTGAGAGCATGGTCTGTGCATAGTCT-GGGGCAGCACA  899
      |||||||||||||||||||||||||||||||||||||| |||||||||| 
seq2  AAACACCAGCCACTGAGAGCATGGTCTGTGCATAGTCTGGGGGCAGCAC-  898

seq1  AGAAC-TCAGCAGCCTCCTCCTACCCCAG-TTTCCCCTGTACTCAAAGAG  947
      ||||| ||||||||||||| ||||||||| |||| |||||| ||  ||||
seq2  AGAACTTCAGCAGCCTCCT-CTACCCCAGTTTTCTCCTGTATTC--AGAG  945

seq1  GAATGCCTCTCCAGGCAAACCTATTGACTGGCTTTGGGGAAGGTGCAGTT  997
      ||   |||||||||||||||||||||||| ||||||||| | | || | |
seq2  GATGTCCTCTCCAGGCAAACCTATTGACT-GCTTTGGGGGAAGGGCGGGT  994

seq1  CAAACGAAGATTTGCCTGAGTTA  1020
        |||||||||| ||||||||||
seq2  ACAACGAAGATTAGCCTGAGTTA  1017