BAC Information

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BAC

Clone NameB6Ng01-066O02
Chromosome5 (Build37)
Map Location 86,338,474 - 86,503,175
singlet/doubletdoublet
Overlap geneCenpc1, LOC100039521, AI586015
Upstream genenone
Downstream geneUbe1l2, Gnrhr, Tmprss11c, Tmprss11d, Tmprss11a, 9930032O22Rik, Tmprss11f, Tmprss11b, Tmprss11e, A730098D12Rik, LOC622056, Ugt2b34, Ugt2b1, LOC665424, LOC545767, Ugt2b35, Ugt2b36
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-066O02.bB6Ng01-066O02.g
ACCDH885933DH885934
length1,106771
definitionDH885933|Mus musculus domesticus DNA, BAC clone: B6Ng01-066O02, 5' end.DH885934|Mus musculus domesticus DNA, BAC clone: B6Ng01-066O02, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(86,502,053 - 86,503,175)(86,338,474 - 86,339,244)
sequence
gaattcttttcagcaggagctcagcatcctgcctagcctcctatcctcct
gtatcccatcgcacaacagatccttggtgatagctctcgcagctcacctt
gctctcaatgcaccctggaattggctgccaattgtatagaaactccactt
atttcccttagcgtttttctcattgcttctctatttaaatctttgagccc
tgtggtgttcctttgagcaattttacttgtagacctcaacctgactttag
gacactagcaaacatctatgtaaaccagaagaaaatgactctgaagtgcg
aatgaagcctgtagttacggttttcatctttccagccaccctttatgttg
tcattgtcaccctctggttcctctttgattgacacatgagagaaagaaac
ttggaaataaattcaaatgggaaaagaaactggctttctcatatacacgc
gtttcaccattatttacattacctcggtcgggctgaactcaggacctaat
gcctcttcgagaatgtgttacctttagctatatatccctaatcctcataa
ttcatcctattttaaaacatgctttctaagcaaaaccagaagaggagtta
gataaaaagagcaaagtcataactcccaccgagctaagcctcttttaacg
tttgttgagtgcaacgtgtaagatcaatgttgcttgaaacacaacttgat
tcagcactgcatttgcttatcccagacataatgaagagtacaacataaaa
taataatatattacatcacagcaagtagtatcctttggctactttttttt
tttaacagttgaataaactgagttcaggggtggaagaattttcctaaggt
catgagttgtatgtagaagaactatcaagtgaagacatggtttactggta
ttctaaaattgtgggattttttttttttcctgctaagcgtgccacacatg
ggatttttttttctcctgctaagcgtgcaaccacattgccttcttaacag
ctgaggatctttgtaatcacccagtactataaacctttgggagagaatcg
agaagacaatctaattcactagaattcttctggggttggccaccttctgg
tgaagt
gaattcttcctgatgctctgtggaattgctgaagctgagtaaacaatgta
tgttcttcctcttcagggagaacaatattgtactgatttagatggatgcc
caaccaactcaattaatacctgggggcaagaatatgatttgtttccaaat
tgcgcccatcctaaatcgaggaggtgaacatggaaatgacatatttattt
taggactggttctcatctttacacacacacacacacacagcaccctttat
ctcagtaccaaaaaagaagtttctacatagggaagattttagtgatgtct
aaaactggtccattacataaagccacaactggtcacaatgctgaggtcaa
ctgctcatggagtaccctgccctgacagattcatctacagcacagttcct
gcatctgggcctcaggaaatatcacagaaaggggggtggggagaaattgt
aagaaccagaagaccaagaggtctactgttaaattgtgtaacctaggggg
tgccaaggaggctacacccatgatgcctcaatgaattaggtacatagaaa
agaccagaacagtgacaataacaatgcacatgctgtggcagaagaagatg
tctcacaggatccgacctccaaagaactacacagaacatgactactgaca
gaagaactggtctcttatacagacagataagcccccagttggctatctaa
tacagaatagttagccctgaaactgtgtacacacaagccacaccaatgga
cataggggagtgtgtgtgtgt
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr5_86502053_86503175
seq2: B6Ng01-066O02.b_44_1149 (reverse)

seq1  ACTTCACCAGAA-GTGTGCAACACCTAGAAGTAAATTTCTAGGTGGTAAT  49
      |||||||||||| |||  |||| || |||||   | |||||    || | 
seq2  ACTTCACCAGAAGGTGGCCAAC-CCCAGAAG---AATTCTA----GTGAA  42

seq1  TTAGATTTGGTCTTTCTCTGATTCTCTTCCCAAAGTGTTTATAGTAACTG  99
      |||||||  ||| ||||| ||||||| |||||||| ||||||||| ||||
seq2  TTAGATT--GTC-TTCTC-GATTCTC-TCCCAAAG-GTTTATAGT-ACTG  85

seq1  GGTCTATTACCAAGATCCTTCAGCTGTTTAAAGAA-GCCATGTGGTGGCA  148
      |||  ||||| ||||||| |||||||||  ||||| || ||||||| |||
seq2  GGT-GATTACAAAGATCC-TCAGCTGTT--AAGAAGGCAATGTGGTTGCA  131

seq1  CGCTTAGCAGGAGAAAAAAAAATCCCATGTGGTGGCACGCTTAGCAGGAA  198
      |||||||||||||||||||||||||||||| |||||||||||||||||||
seq2  CGCTTAGCAGGAGAAAAAAAAATCCCATGT-GTGGCACGCTTAGCAGGAA  180

seq1  AAAAAAAAAAT-CCACAATTTTAGAATACCAGTAAACCATGTCTTCACTT  247
      ||||||||||| ||||||||||||||||||||||||||||||||||||||
seq2  AAAAAAAAAATCCCACAATTTTAGAATACCAGTAAACCATGTCTTCACTT  230

seq1  GATAGTTCTTCTACATACAACTCATGACCTTAGGAAAATTCTTCCACCCC  297
      |||||||||||||||||||||||||||||||||||||||||||||| |||
seq2  GATAGTTCTTCTACATACAACTCATGACCTTAGGAAAATTCTTCCA-CCC  279

seq1  CTGAACTCAGTTTATTCAACTGTTAAAAAAAAAAAGTAGCCAAAGGATAC  347
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGAACTCAGTTTATTCAACTGTTAAAAAAAAAAAGTAGCCAAAGGATAC  329

seq1  TACTTGCTGTGATGTAATATATTATTA-TTTATGTTGTACTCTTCATTAT  396
      ||||||||||||||||||||||||||| ||||||||||||||||||||||
seq2  TACTTGCTGTGATGTAATATATTATTATTTTATGTTGTACTCTTCATTAT  379

seq1  GTCTGGGATAAGCAAATGCAGTGCTGAATCAAGTTGTGTTTCAAGCAACA  446
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCTGGGATAAGCAAATGCAGTGCTGAATCAAGTTGTGTTTCAAGCAACA  429

seq1  TTGATCTTACACGTTGCACTCAACAAACGTTAAAAGAGGCTTAGCTCGGT  496
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGATCTTACACGTTGCACTCAACAAACGTTAAAAGAGGCTTAGCTCGGT  479

seq1  GGGAGTTATGACTTTGCTCTTTTTATCTAACTCCTCTTCTGGTTTTGCTT  546
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGAGTTATGACTTTGCTCTTTTTATCTAACTCCTCTTCTGGTTTTGCTT  529

seq1  AGAAAGCATGTTTTAAAATAGGATGAATTATGAGGATTAGGGATATATAG  596
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAAAGCATGTTTTAAAATAGGATGAATTATGAGGATTAGGGATATATAG  579

seq1  CTAAAGGTAACACATTCTCGAAGAGGCATTAGGTCCTGAGTTCAGCCCGA  646
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTAAAGGTAACACATTCTCGAAGAGGCATTAGGTCCTGAGTTCAGCCCGA  629

seq1  CCGAGGTAATGTAAATAATGGTGAAACGCGTGTATATGAGAAAGCCAGTT  696
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCGAGGTAATGTAAATAATGGTGAAACGCGTGTATATGAGAAAGCCAGTT  679

seq1  TCTTTTCCCATTTGAATTTATTTCCAAGTTTCTTTCTCTCATGTGTCAAT  746
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTTTTCCCATTTGAATTTATTTCCAAGTTTCTTTCTCTCATGTGTCAAT  729

seq1  CAAAGAGGAACCAGAGGGTGACAATGACAACATAAAGGGTGGCTGGAAAG  796
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAAGAGGAACCAGAGGGTGACAATGACAACATAAAGGGTGGCTGGAAAG  779

seq1  ATGAAAACCGTAACTACAGGCTTCATTCGCACTTCAGAGTCATTTTCTTC  846
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGAAAACCGTAACTACAGGCTTCATTCGCACTTCAGAGTCATTTTCTTC  829

seq1  TGGTTTACATAGATGTTTGCTAGTGTCCTAAAGTCAGGTTGAGGTCTACA  896
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGTTTACATAGATGTTTGCTAGTGTCCTAAAGTCAGGTTGAGGTCTACA  879

seq1  AGTAAAATTGCTCAAAGGAACACCACAGGGCTCAAAGATTTAAATAGAGA  946
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTAAAATTGCTCAAAGGAACACCACAGGGCTCAAAGATTTAAATAGAGA  929

seq1  AGCAATGAGAAAAACGCTAAGGGAAATAAGTGGAGTTTCTATACAATTGG  996
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCAATGAGAAAAACGCTAAGGGAAATAAGTGGAGTTTCTATACAATTGG  979

seq1  CAGCCAATTCCAGGGTGCATTGAGAGCAAGGTGAGCTGCGAGAGCTATCA  1046
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGCCAATTCCAGGGTGCATTGAGAGCAAGGTGAGCTGCGAGAGCTATCA  1029

seq1  CCAAGGATCTGTTGTGCGATGGGATACAGGAGGATAGGAGGCTAGGCAGG  1096
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAAGGATCTGTTGTGCGATGGGATACAGGAGGATAGGAGGCTAGGCAGG  1079

seq1  ATGCTGAGCTCCTGCTGAAAAGAATTC  1123
      |||||||||||||||||||||||||||
seq2  ATGCTGAGCTCCTGCTGAAAAGAATTC  1106

seq1: chr5_86338474_86339244
seq2: B6Ng01-066O02.g_68_838

seq1  GAATTCTTCCTGATGCTCTGTGGAATTGCTGAAGCTGAGTAAACAATGTA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTTCCTGATGCTCTGTGGAATTGCTGAAGCTGAGTAAACAATGTA  50

seq1  TGTTCTTCCTCTTCAGGGAGAACAATATTGTACTGATTTAGATGGATGCC  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTTCTTCCTCTTCAGGGAGAACAATATTGTACTGATTTAGATGGATGCC  100

seq1  CAACCAACTCAATTAATACCTGGGGGCAAGAATATGATTTGTTTCCAAAT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAACCAACTCAATTAATACCTGGGGGCAAGAATATGATTTGTTTCCAAAT  150

seq1  TGCGCCCATCCTAAATCGAGGAGGTGAACATGGAAATGACATATTTATTT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCGCCCATCCTAAATCGAGGAGGTGAACATGGAAATGACATATTTATTT  200

seq1  TAGGACTGGTTCTCATCTTTACACACACACACACACACAGCACCCTTTAT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGGACTGGTTCTCATCTTTACACACACACACACACACAGCACCCTTTAT  250

seq1  CTCAGTACCAAAAAAGAAGTTTCTACATAGGGAAGATTTTAGTGATGTCT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCAGTACCAAAAAAGAAGTTTCTACATAGGGAAGATTTTAGTGATGTCT  300

seq1  AAAACTGGTCCATTACATAAAGCCACAACTGGTCACAATGCTGAGGTCAA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAACTGGTCCATTACATAAAGCCACAACTGGTCACAATGCTGAGGTCAA  350

seq1  CTGCTCATGGAGTACCCTGCCCTGACAGATTCATCTACAGCACAGTTCCT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGCTCATGGAGTACCCTGCCCTGACAGATTCATCTACAGCACAGTTCCT  400

seq1  GCATCTGGGCCTCAGGAAATATCACAGAAAGGGGGGTGGGGAGAAATTGT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCATCTGGGCCTCAGGAAATATCACAGAAAGGGGGGTGGGGAGAAATTGT  450

seq1  AAGAACCAGAAGACCAAGAGGTCTACTGTTAAATTGTGTAACCTAGGGGG  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGAACCAGAAGACCAAGAGGTCTACTGTTAAATTGTGTAACCTAGGGGG  500

seq1  TGCCAAGGAGGCTACACCCATGATGCCTCAATGAATTAGGTACATAGAAA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCCAAGGAGGCTACACCCATGATGCCTCAATGAATTAGGTACATAGAAA  550

seq1  AGACCAGAACAGTGACAATAACAATGCACATGCTGTGGCAGAAGAAGATG  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGACCAGAACAGTGACAATAACAATGCACATGCTGTGGCAGAAGAAGATG  600

seq1  TCTCACAGGATCCGACCTCCAAAGAACTACACAGAACATGACTACTGACA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTCACAGGATCCGACCTCCAAAGAACTACACAGAACATGACTACTGACA  650

seq1  GAAGAACTGGTCTCTTATACAGACAGATAAGCCCCCAGTTGGCTATCTAA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAGAACTGGTCTCTTATACAGACAGATAAGCCCCCAGTTGGCTATCTAA  700

seq1  TACAGAATAGTTAGCCCTGAAACTGTGTACACACAAGCCACACCAATGGA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACAGAATAGTTAGCCCTGAAACTGTGTACACACAAGCCACACCAATGGA  750

seq1  CATAGGGGAGTGTGTGTGTGT  771
      |||||||||||||||||||||
seq2  CATAGGGGAGTGTGTGTGTGT  771