BAC Information

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BAC

Clone NameB6Ng01-067B23
Chromosome5 (Build37)
Map Location 85,748,831 - 85,922,162
singlet/doubletdoublet
Overlap genenone
Upstream geneEpha5
Downstream geneCenpc1, LOC100039521, AI586015, Ube1l2, Gnrhr, Tmprss11c, Tmprss11d, Tmprss11a, 9930032O22Rik
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-067B23.bB6Ng01-067B23.g
ACCDH886109DH886110
length1,164198
definitionDH886109|Mus musculus domesticus DNA, BAC clone: B6Ng01-067B23, 5' end.DH886110|Mus musculus domesticus DNA, BAC clone: B6Ng01-067B23, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(85,920,984 - 85,922,162)(85,748,831 - 85,749,028)
sequence
gaattcactatgttttgaacttataaatgtgctcattgagtttttttact
tggtgttaatggaagattatatgtaccaagtaaagtgcaaagccagaaag
agaagtaaaaatgcagttgcatttgctcacattgtgcacaatatggtcaa
tgcaatgactagaccaataaataggacatttagaacagtgcggaatgtaa
gtgccaaagtgaatttaaaaaaaatagaaactataagtgttagtggtggg
agtatgaactctattctacacatttatgtgtcatatgactttttctaaga
agatgtgaaaagatgtctatttaccccagataggacaccaacaaaagacc
aaagatactgcttcattccagtctagcccagtgaaccagggagtttttct
gggttacatacagaggcagaagagagtcatatgcagcttcatcactacaa
gaatctccctaatatgggtagcatcacagaaaactgcatccttaaggacc
ttacaggactcggattgcagcatgccaagccaagtgttctctctttagtg
attgcatgttgtttttagaatatttggcaaggatcttgtaagttttcagc
ttactaagccttctaagttgttatttttaacttcctgaaccctatgagcc
tttccaccttcttcttggaaggaacattgaaatttagaaggagtgactat
acaaaaacatctctaccaaaagccttctgtttactttggtggaactgata
gggcactctcgggctctgagaaacaagcgccatgtatatagtgtgatcca
aggcttgtgttactcctgtataattcaacaggggattttttttttcaatt
tacttgcaattctttagaagcattctgcatttcagaatataaaatgcaaa
tctctctcacaaaaccaactgtatatcctcattccctattcacttgtttg
ggtgccccaattactaggaccactgctgatcaatatgatttctgtgtcat
tgccttttctgctgagaacaaaatctctgctatttagactgtcttcctgt
cctatacttctcagtggatgaagtttcatgacctgttgcatgcttaacaa
ccttaaatagcgtctcacatacatctttgataaaacatgcctacaacagt
ttgcttactcactt
agagctcatgaaaactgagggcttggaatacacctatacctccacacttc
acaataaagcaaattcatttcttccattccctctgttgactgaacagttg
gctcaagattaatatattctgtcaaatcaggcagtttgagcttttcctgc
atggtatcttcctcctcctcctcctcctcctcctcctcctcctcctcc
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr5_85920984_85922162
seq2: B6Ng01-067B23.b_43_1206 (reverse)

seq1  AAGTGAGTAAAGCAAAACATGTTTGTTAGCATGTTTTATATCAAAGATGT  50
      |||||||| |||||||   || ||||  ||||||||  ||||||||||||
seq2  AAGTGAGT-AAGCAAA--CTG-TTGTAGGCATGTTT--TATCAAAGATGT  44

seq1  ATGGTAGACGCTATTTTAAAGTTTGTTAAGCATGCAAAACAGGTCAATGA  100
      |||  |||||||||||  ||| |||||||||||||  |||||||| ||||
seq2  ATGTGAGACGCTATTT--AAGGTTGTTAAGCATGC--AACAGGTC-ATGA  89

seq1  AATTTCAT-CACTGAG-AGTATAGGACCAGGAAGACAAGTCTAAATAGCA  148
      || ||||| ||||||| ||||||||| ||||||||| |||||||||||||
seq2  AACTTCATCCACTGAGAAGTATAGGA-CAGGAAGAC-AGTCTAAATAGCA  137

seq1  GAGATTTTGGTCTCAGCAAGAAAAGGCAAATGACAACAGAAATCATATTT  198
      ||||||||| ||||||| ||||||||| |||||| |||||||||||| ||
seq2  GAGATTTTGTTCTCAGC-AGAAAAGGC-AATGAC-ACAGAAATCATA-TT  183

seq1  GATCAGCAGTGGTCCTAGTAATTGGGGCACCCAAACAAGTGAATAGGGAA  248
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATCAGCAGTGGTCCTAGTAATTGGGGCACCCAAACAAGTGAATAGGGAA  233

seq1  TGAGGATATACAGTTGGTTTTGTGAGAGAGATTTGCATTTTATATTCTGA  298
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAGGATATACAGTTGGTTTTGTGAGAGAGATTTGCATTTTATATTCTGA  283

seq1  AATGCAGAATGCTTCTAAAGAATTGCAAGTAAATTGAAAAAAAAAATCCC  348
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATGCAGAATGCTTCTAAAGAATTGCAAGTAAATTGAAAAAAAAAATCCC  333

seq1  CTGTTGAATTATACAGGAGTAACACAAGCCTTGGATCACACTATATACAT  398
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGTTGAATTATACAGGAGTAACACAAGCCTTGGATCACACTATATACAT  383

seq1  GGCGCTTGTTTCTCAGAGCCCGAGAGTGCCCTATCAGTTCCACCAAAGTA  448
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCGCTTGTTTCTCAGAGCCCGAGAGTGCCCTATCAGTTCCACCAAAGTA  433

seq1  AACAGAAGGCTTTTGGTAGAGATGTTTTTGTATAGTCACTCCTTCTAAAT  498
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACAGAAGGCTTTTGGTAGAGATGTTTTTGTATAGTCACTCCTTCTAAAT  483

seq1  TTCAATGTTCCTTCCAAGAAGAAGGTGGAAAGGCTCATAGGGTTCAGGAA  548
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCAATGTTCCTTCCAAGAAGAAGGTGGAAAGGCTCATAGGGTTCAGGAA  533

seq1  GTTAAAAATAACAACTTAGAAGGCTTAGTAAGCTGAAAACTTACAAGATC  598
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTAAAAATAACAACTTAGAAGGCTTAGTAAGCTGAAAACTTACAAGATC  583

seq1  CTTGCCAAATATTCTAAAAACAACATGCAATCACTAAAGAGAGAACACTT  648
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTGCCAAATATTCTAAAAACAACATGCAATCACTAAAGAGAGAACACTT  633

seq1  GGCTTGGCATGCTGCAATCCGAGTCCTGTAAGGTCCTTAAGGATGCAGTT  698
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCTTGGCATGCTGCAATCCGAGTCCTGTAAGGTCCTTAAGGATGCAGTT  683

seq1  TTCTGTGATGCTACCCATATTAGGGAGATTCTTGTAGTGATGAAGCTGCA  748
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTGTGATGCTACCCATATTAGGGAGATTCTTGTAGTGATGAAGCTGCA  733

seq1  TATGACTCTCTTCTGCCTCTGTATGTAACCCAGAAAAACTCCCTGGTTCA  798
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATGACTCTCTTCTGCCTCTGTATGTAACCCAGAAAAACTCCCTGGTTCA  783

seq1  CTGGGCTAGACTGGAATGAAGCAGTATCTTTGGTCTTTTGTTGGTGTCCT  848
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGGGCTAGACTGGAATGAAGCAGTATCTTTGGTCTTTTGTTGGTGTCCT  833

seq1  ATCTGGGGTAAATAGACATCTTTTCACATCTTCTTAGAAAAAGTCATATG  898
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCTGGGGTAAATAGACATCTTTTCACATCTTCTTAGAAAAAGTCATATG  883

seq1  ACACATAAATGTGTAGAATAGAGTTCATACTCCCACCACTAACACTTATA  948
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACACATAAATGTGTAGAATAGAGTTCATACTCCCACCACTAACACTTATA  933

seq1  GTTTCTATTTTTTTTAAATTCACTTTGGCACTTACATTCCGCACTGTTCT  998
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTTCTATTTTTTTTAAATTCACTTTGGCACTTACATTCCGCACTGTTCT  983

seq1  AAATGTCCTATTTATTGGTCTAGTCATTGCATTGACCATATTGTGCACAA  1048
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATGTCCTATTTATTGGTCTAGTCATTGCATTGACCATATTGTGCACAA  1033

seq1  TGTGAGCAAATGCAACTGCATTTTTACTTCTCTTTCTGGCTTTGCACTTT  1098
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTGAGCAAATGCAACTGCATTTTTACTTCTCTTTCTGGCTTTGCACTTT  1083

seq1  ACTTGGTACATATAATCTTCCATTAACACCAAGTAAAAAAACTCAATGAG  1148
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTTGGTACATATAATCTTCCATTAACACCAAGTAAAAAAACTCAATGAG  1133

seq1  CACATTTATAAGTTCAAAACATAGTGAATTC  1179
      |||||||||||||||||||||||||||||||
seq2  CACATTTATAAGTTCAAAACATAGTGAATTC  1164

seq1: chr5_85748831_85749028
seq2: B6Ng01-067B23.g_73_270

seq1  AGAGCTCATGAAAACTGAGGGCTTGGAATACACCTATACCTCCACACTTC  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAGCTCATGAAAACTGAGGGCTTGGAATACACCTATACCTCCACACTTC  50

seq1  ACAATAAAGCAAATTCATTTCTTCCATTCCCTCTGTTGACTGAACAGTTG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAATAAAGCAAATTCATTTCTTCCATTCCCTCTGTTGACTGAACAGTTG  100

seq1  GCTCAAGATTAATATATTCTGTCAAATCAGGCAGTTTGAGCTTTTCCTGC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTCAAGATTAATATATTCTGTCAAATCAGGCAGTTTGAGCTTTTCCTGC  150

seq1  ATGGTATCTTCCTCCTCCTCCTCCTCCTCCTCCTCCTCCTCCTCCTCC  198
      ||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGGTATCTTCCTCCTCCTCCTCCTCCTCCTCCTCCTCCTCCTCCTCC  198