BAC Information

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BAC

Clone NameB6Ng01-067D17
Chromosome5 (Build37)
Map Location 58,317,173 - 58,473,958
singlet/doubletdoublet
Overlap genenone
Upstream geneLOC100041349, LOC666455, LOC625721, EG666465, Pcdh7
Downstream geneLOC100041385, LOC100041396, LOC666499, EG625870
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-067D17.bB6Ng01-067D17.g
ACCDH886186DH886187
length1,179905
definitionDH886186|Mus musculus domesticus DNA, BAC clone: B6Ng01-067D17, 5' end.DH886187|Mus musculus domesticus DNA, BAC clone: B6Ng01-067D17, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(58,472,745 - 58,473,958)(58,317,173 - 58,318,077)
sequence
gaattcaagaaactgaaggaaggcgagcaagaatgtcacgcaaagtgaat
ctggggcctgcatgagacacaaagaaaagatgaggggaaattgagcagaa
ggaactgagcctgtagtattgattcataagactgagttcacccaagctac
tgtgtggtgtgcatgctgcttatactttgctggcagaaatgttaccctga
acttgcaaatttctttctatcttccaagcccgatacattttatctttatg
ttttctctgaatgactcagaacaaggcagtgtcctcaactaatttcctag
ccaagcatgtgaaaaataacctccatataggcacacacaggcccaaagca
tatgttgaaaagatattctagctcttttactgtataataagaaagttggg
agtacagaatctagagaaagaaagctgctttcaaatcaattgggtatgtg
actctcgtcactgtatataaaactctctagtttcttacagaaggatttag
gacatttaactgtatctttccccctttctaattataggaacacaatgagt
taatgcatgtaaagtgctaagaaggatgcctttgctgtagaatcatccag
tctttccaatagctaattaatgggcatctattgtgcattagtaataatta
actgtgtcctactgtccaagttctgggactgaatcacaacttccagagca
aaagtaagataaaatcgtctcatacaattagttggaatggcagaaaaggg
aacgattaagatgaattttgaaactcatcaacatttctgtctccttcata
gtggtttccagtttttctgcttggtacagttagggaaatccgagtcccta
aactaacatatgcatccccattcttattcttcccaccatgtcactttttt
acctgccaatccctgacacttttcatgtgcacaggcaatttccatatcac
aaccatttttctatggatactaaacacttccttataatgagtcagttacc
atactgccgtataacagctattaaagttgttctagaaaaaccaccaaatg
ttaaagtttacattgcatttgagttacctcagggatagttcacatcattc
gtcacagttgaggcatctccattaaatcctcagacgcacctctgctatct
aaagtacagttgtcagcacctgcattctg
gaattcttcttaggtcttggattactagaaagcttagtgagtggcacata
cctgtattcccaggcttgggacatgttcaaagacaggttaattttgtgtg
acacaacttttgtgaactataaagcaagtttaggcaagtcaggtctatat
attgataactggtctcaacaaaccaaccaacaaaccaatctcctcaaaaa
taaaatgtataacaaaagaatgtatagcatattctttcagccttttgcac
aaagcaatctcttattttatcatcatgaaccaatcaggccattgcgttga
catgagtcaagtattcatgtcactaagtcagaaagagactaatgaatgtg
tttttctttttgctaattccatttactaatgatttcagaataacaggtta
atagaaattacctcaaatagggaaagaatgaaggtcaacttaatattcat
gtctttaatttgatggttcaatttcattagtagtttatacatatgtacat
acagtctgacatagtcatgaaaacacaaatggagggtagtgtggtgagat
tgtttaacaatatataaggacccttgaaattaacacattaagaatcagtt
tctgaagttggtccctggactaaaaaattccctttcatttagaaaaacca
ttcagtgaagtaagtaaaaaaatgattgttgaacaagttatttaatacat
ttagcattttgtggtaaagctgaaaatttcaaatcaggtgaaagatcatc
taattttatgaaattaaagattttctgacaaatttctctttataaattta
gtaaaaatatttcatatgcaaaacaccaccttaaaaatgctagataagcc
ataccttttttatcacacattattaaattagaaaatatattgttttttgt
ggttg
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr5_58472745_58473958
seq2: B6Ng01-067D17.b_49_1227 (reverse)

seq1  CAGAATGCACAGTGCTGCCTGACAAACATTGTACTTTTTAAAGATAGCAG  50
      |||||||||    | || ||||||   | ||||||||    |||||||||
seq2  CAGAATGCA----GGTG-CTGACA---ACTGTACTTT----AGATAGCAG  38

seq1  A-GTGCTGTCTGAGTGATATTAAATGGGAAGATGCCCTCAAAACTGTGGA  99
      | |||| |||||||    ||| |||||  ||||| ||||  |||||| ||
seq2  AGGTGC-GTCTGAG---GATTTAATGG--AGATG-CCTC--AACTGT-GA  78

seq1  CGAATGATTGGTTGATACTTATCCCTGAGGTAAACCTCAAATGCAATTGT  149
      ||||||||    ||| || ||||||||||||||  ||||||||||| |||
seq2  CGAATGAT---GTGA-AC-TATCCCTGAGGTAA--CTCAAATGCAA-TGT  120

seq1  AAACTTTTACATTTGTGTGTTTTTCTTAGAACAACTTTAATAGCTGTGTA  199
      ||||||| ||||||| ||| ||||  ||||||||||||||||||||| ||
seq2  AAACTTTAACATTTG-GTGGTTTTTCTAGAACAACTTTAATAGCTGT-TA  168

seq1  TACGGCAGTATGGTAAACTGACTCATTTATAAGGAAGTTGTTTAGTATCC  249
      |||||||||||||| |||||||||| ||||||||||| ||||||||||||
seq2  TACGGCAGTATGGT-AACTGACTCA-TTATAAGGAAG-TGTTTAGTATCC  215

seq1  ATAGAAAAATGGTTGTTGATATGGAAATTGCCTGTGCACATGAAAAGTGT  299
      ||||||||||||||| ||||||||||||||||||||||||||||||||||
seq2  ATAGAAAAATGGTTG-TGATATGGAAATTGCCTGTGCACATGAAAAGTGT  264

seq1  CAGGGATTGGCAGGTAAAAAAGTGACATGGTGGGAAGAATAAGAATGGGG  349
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGGGATTGGCAGGTAAAAAAGTGACATGGTGGGAAGAATAAGAATGGGG  314

seq1  ATGCATATGTTAGTTTAGGGACTCGGATTTCCCTAACTGTACCAAGCAGA  399
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGCATATGTTAGTTTAGGGACTCGGATTTCCCTAACTGTACCAAGCAGA  364

seq1  AAAACTGGAAACCACTATGAAGGAGACAGAAATGTTGATGAGTTTCAAAA  449
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAACTGGAAACCACTATGAAGGAGACAGAAATGTTGATGAGTTTCAAAA  414

seq1  TTCATCTTAATCGTTCCCTTTTCTGCCATTCCAACTAATTGTATGAGACG  499
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCATCTTAATCGTTCCCTTTTCTGCCATTCCAACTAATTGTATGAGACG  464

seq1  ATTTTATCTTACTTTTGCTCTGGAAGTTGTGATTCAGTCCCAGAACTTGG  549
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTTATCTTACTTTTGCTCTGGAAGTTGTGATTCAGTCCCAGAACTTGG  514

seq1  ACAGTAGGACACAGTTAATTATTACTAATGCACAATAGATGCCCATTAAT  599
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAGTAGGACACAGTTAATTATTACTAATGCACAATAGATGCCCATTAAT  564

seq1  TAGCTATTGGAAAGACTGGATGATTCTACAGCAAAGGCATCCTTCTTAGC  649
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGCTATTGGAAAGACTGGATGATTCTACAGCAAAGGCATCCTTCTTAGC  614

seq1  ACTTTACATGCATTAACTCATTGTGTTCCTATAATTAGAAAGGGGGAAAG  699
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTTTACATGCATTAACTCATTGTGTTCCTATAATTAGAAAGGGGGAAAG  664

seq1  ATACAGTTAAATGTCCTAAATCCTTCTGTAAGAAACTAGAGAGTTTTATA  749
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATACAGTTAAATGTCCTAAATCCTTCTGTAAGAAACTAGAGAGTTTTATA  714

seq1  TACAGTGACGAGAGTCACATACCCAATTGATTTGAAAGCAGCTTTCTTTC  799
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACAGTGACGAGAGTCACATACCCAATTGATTTGAAAGCAGCTTTCTTTC  764

seq1  TCTAGATTCTGTACTCCCAACTTTCTTATTATACAGTAAAAGAGCTAGAA  849
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTAGATTCTGTACTCCCAACTTTCTTATTATACAGTAAAAGAGCTAGAA  814

seq1  TATCTTTTCAACATATGCTTTGGGCCTGTGTGTGCCTATATGGAGGTTAT  899
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATCTTTTCAACATATGCTTTGGGCCTGTGTGTGCCTATATGGAGGTTAT  864

seq1  TTTTCACATGCTTGGCTAGGAAATTAGTTGAGGACACTGCCTTGTTCTGA  949
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTCACATGCTTGGCTAGGAAATTAGTTGAGGACACTGCCTTGTTCTGA  914

seq1  GTCATTCAGAGAAAACATAAAGATAAAATGTATCGGGCTTGGAAGATAGA  999
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCATTCAGAGAAAACATAAAGATAAAATGTATCGGGCTTGGAAGATAGA  964

seq1  AAGAAATTTGCAAGTTCAGGGTAACATTTCTGCCAGCAAAGTATAAGCAG  1049
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGAAATTTGCAAGTTCAGGGTAACATTTCTGCCAGCAAAGTATAAGCAG  1014

seq1  CATGCACACCACACAGTAGCTTGGGTGAACTCAGTCTTATGAATCAATAC  1099
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATGCACACCACACAGTAGCTTGGGTGAACTCAGTCTTATGAATCAATAC  1064

seq1  TACAGGCTCAGTTCCTTCTGCTCAATTTCCCCTCATCTTTTCTTTGTGTC  1149
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACAGGCTCAGTTCCTTCTGCTCAATTTCCCCTCATCTTTTCTTTGTGTC  1114

seq1  TCATGCAGGCCCCAGATTCACTTTGCGTGACATTCTTGCTCGCCTTCCTT  1199
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCATGCAGGCCCCAGATTCACTTTGCGTGACATTCTTGCTCGCCTTCCTT  1164

seq1  CAGTTTCTTGAATTC  1214
      |||||||||||||||
seq2  CAGTTTCTTGAATTC  1179

seq1: chr5_58317173_58318077
seq2: B6Ng01-067D17.g_69_973

seq1  GAATTCTTCTTAGGTCTTGGATTACTAGAAAGCTTAGTGAGTGGCACATA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTTCTTAGGTCTTGGATTACTAGAAAGCTTAGTGAGTGGCACATA  50

seq1  CCTGTATTCCCAGGCTTGGGACATGTTCAAAGACAGGTTTAATTTTGTGT  100
      ||||||||||||||||||||||||||||||||||||| ||||||||||||
seq2  CCTGTATTCCCAGGCTTGGGACATGTTCAAAGACAGG-TTAATTTTGTGT  99

seq1  GACACAACTTTTGTGAACTATAAAGCAAGTTTAGGCAAGTCAGGTCTATA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACACAACTTTTGTGAACTATAAAGCAAGTTTAGGCAAGTCAGGTCTATA  149

seq1  TATTGATAACTGGTCTCAACAAACCAACCAACAAACCAATCTCCTCAAAA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATTGATAACTGGTCTCAACAAACCAACCAACAAACCAATCTCCTCAAAA  199

seq1  ATAAAATGTATAACAAAAGAATGTATAGCATATTCTTTCAGCCTTTTGCA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAAAATGTATAACAAAAGAATGTATAGCATATTCTTTCAGCCTTTTGCA  249

seq1  CAAAGCAATCTCTTATTTTATCATCATGAACCAATCAGGCCATTGCGTTG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAAGCAATCTCTTATTTTATCATCATGAACCAATCAGGCCATTGCGTTG  299

seq1  ACATGAGTCAAGTATTCATGTCACTAAGTCAGAAAGAGACTAATGAATGT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACATGAGTCAAGTATTCATGTCACTAAGTCAGAAAGAGACTAATGAATGT  349

seq1  GTTTTTCTTTTTGCTAATTCCATTTACTAATGATTTCAGAATAACAGGTT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTTTTCTTTTTGCTAATTCCATTTACTAATGATTTCAGAATAACAGGTT  399

seq1  AATAGAAATTACCTCAAATAGGGAAAGAATGAAGGTCAACTTAATATTCA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATAGAAATTACCTCAAATAGGGAAAGAATGAAGGTCAACTTAATATTCA  449

seq1  TGTCTTTAATTTGATGGTTCAATTTCATTAGTAGTTTATACATATGTACA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTCTTTAATTTGATGGTTCAATTTCATTAGTAGTTTATACATATGTACA  499

seq1  TACAGTCTGACATAGTCATGAAAACACAAATGGAGGGTAGTGTGGTGAGA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACAGTCTGACATAGTCATGAAAACACAAATGGAGGGTAGTGTGGTGAGA  549

seq1  TTGTTTAACAATATATAAGGACCCTTGAAATTAACACATTAAGAATCAGT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGTTTAACAATATATAAGGACCCTTGAAATTAACACATTAAGAATCAGT  599

seq1  TTCTGAAGTTGGTCCCTGGACTAAAAAATTCCCTTTCATTTAGAAAAACC  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTGAAGTTGGTCCCTGGACTAAAAAATTCCCTTTCATTTAGAAAAACC  649

seq1  ATTCAGTGAAGTAAGTAAAAAAATGATTGTTGAACAAGTTATTTAATACA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTCAGTGAAGTAAGTAAAAAAATGATTGTTGAACAAGTTATTTAATACA  699

seq1  TTTAGCATTTTGTGGTAAAGCTGAAAATTTCAAATCAGGTGAAAGATCAT  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTAGCATTTTGTGGTAAAGCTGAAAATTTCAAATCAGGTGAAAGATCAT  749

seq1  CTAATTTTATGAAATTAAAGATTTTCTGACAAATTTCTCTTTATAAATTT  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTAATTTTATGAAATTAAAGATTTTCTGACAAATTTCTCTTTATAAATTT  799

seq1  AGTAAAAATATTTCATATGCAAAACACCACCTTAAAAATGCTAGATAAGC  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTAAAAATATTTCATATGCAAAACACCACCTTAAAAATGCTAGATAAGC  849

seq1  CATACCTTTTTTATCACACATTATTAAATTAGAAAATATATTG-TTTTTG  899
      ||||||||||||||||||||||||||||||||||||||||||| ||||||
seq2  CATACCTTTTTTATCACACATTATTAAATTAGAAAATATATTGTTTTTTG  899

seq1  TGGTTG  905
      ||||||
seq2  TGGTTG  905