BAC Information

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BAC

Clone NameB6Ng01-067H21
Chromosome5 (Build37)
Map Location 96,760,540 - 96,903,499
singlet/doubletdoublet
Overlap geneFras1
Upstream geneLOC100041296, EG666159, LOC666164, EG666169, D5Ertd577e, LOC100041354, LOC100040503, LOC666187, EG622731, LOC100041380, EG666203, EG666209, LOC665943, LOC433921, Cxcl13, EG666231, Cnot6l, LOC100040559, Mrpl1
Downstream geneAnxa3, EG666266, LOC670358, Bmp2k, Paqr3, LOC100040598, EG433923, EG666293, C80008, Gk2
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-067H21.bB6Ng01-067H21.g
ACCDH886365DH886366
length1,1611,121
definitionDH886365|Mus musculus domesticus DNA, BAC clone: B6Ng01-067H21, 5' end.DH886366|Mus musculus domesticus DNA, BAC clone: B6Ng01-067H21, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(96,902,328 - 96,903,499)(96,760,540 - 96,761,681)
sequence
gaattcagtggcacaacaactccatcataggatggagtgtggccatggac
tcatgtcacaaacacagagccactgagacaatcacacagaggaggacagt
gacaacaggatggttctagtttcatccctcttttcaaatttcaatgatca
ttattgcattgtagtaggtagaatatatagaactgcacagagacaacaga
ccattctaaatatgctctgacctcatgacattgtcccaaagttataatct
ttagtgaaatccccagaatggatcttcttttgtttctgggtcatttattt
gacaaataattactatgcaaagcactgtacaatctgtgagctcccatcta
tggtgtgggcacataagggcctgactacctattggaggggatatgaaaat
aattagccattttacaagagctaattaacaagacaacaggtgatgcgaaa
aagcaatatgaaatgaagcaacaaataaacgatgcgggcttacagaggag
agccagccctgctggctgctaccgtttcttgctgtcctatctttcatctg
gtcatttagcagagatttattgagtacccacagtatgccagcagaatggc
gaataaagcaaacaccaagccacagggaagagagacctagcaaacaagca
tgcaaataggcacatgaatactgactgagctatgccacattgaaggaaat
gaatgggatgcttagagtaacaggggatcttgctgggagatcatcgatgc
tcaagacaacacctttgaaagtatatggcggcattttgacatctcctgtc
tccgctttagagataacttgagttttacttatattaacattatcatctct
ctatttctagggtcaaggaaactgagtctctccaaaggtccaaggctaat
agatggcggaaccagaatgtaaatgtagctgccactcagcctcctgaacc
tcacactcccattaggccacactgactatcaattggagttggggccagag
atgctcgctttggatcgtgaaatatagtaagaagaaaccctctaatggca
tcctactaaaatctaactgattaatttcttagtatgtcattgactagcca
tctgggagcctacttccaagatcatctttgagcctagattattttgccca
gcctcatccag
gaattcctaccagctaaagagccagacaggagtttgtctacagagcagca
tttccgttccggccgaaagcacggctgtgctggcggcctgctttaaatca
tgcaggctgaggccaggtctccacccattcccagatcggcaatgttgagc
gggttattttccctcccggactcagttttctcgttatataaatagggtaa
taataataatagtacccatctcgtgggggttctgtgacaattgcctaaga
taaaatagaagtgtttagcacagcgacttatgtgcaagctgtgctccgtg
ttatttgataccatctgtaattctaaaaatgttcattccccaccctaact
cataaagtctagttagacagtaaccaaacaaaatcaaggactagatcttt
gctttcaggttgtgccaagtgaatctggggtaaggactataaatggatgt
gtaacacttgatttattttattagcaatgccacgtaattataaggagaga
aaggaaaagacagtcgataagtaattctgggaaccttaataaagtattta
ttcttttctatatgaccttgtaaactagtgagcgccacttttatgtcttg
ttaacagggacattaccttcaagagtttgtatgtgggaccccctttagta
attccctgcctgttgttgatgttaggaaaccaataattaaccaaacagaa
ggtagtatattttcaattcttgtggaacttttctccttagtgtgtcttga
aagtaactttagctatctatattgggagttaaggaaaaacagacacctgt
gagcatgcgtacttgtgctaacacccccgaaggaaccaagtgaactctgg
gagcaaggtaggaggcatcaggacaagggcaagctcctgcctggctcgaa
cagttcacgagggtgtaacatatgacgctgtgagctgctttcgatgatgc
agaccttattttctggtaaatggttcttcaggatgctgtagataagctac
actctagttctgctttctgaaagggccgtgtgttggtcacatgctgaccg
atattcacctctttttccttgcttctctcctttcaacaaggctgtgatcc
accagctagtaagagctctac
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr5_96902328_96903499
seq2: B6Ng01-067H21.b_43_1203 (reverse)

seq1  CTGGATGATGCT-GGCAAAATAAATACTAAGGCTCAAAGATGAACTTTGT  49
      |||||||| ||| ||||||||||   || |||||||||||||| ||   |
seq2  CTGGATGAGGCTGGGCAAAATAA--TCT-AGGCTCAAAGATGATCT---T  44

seq1  GAAAGTA-GCTCACAGATTGTGCTAGTCAATGACACTACTAAGAAATTAA  98
      | ||||| |||| |||||   |||||||||||||| ||||||||||||||
seq2  GGAAGTAGGCTCCCAGAT--GGCTAGTCAATGACA-TACTAAGAAATTAA  91

seq1  TCAGTTAGATTTTTATTATGATGCCATTAGAGTGTTTTTCTTCTTACTAT  148
      ||||||||| ||||| || ||||||||||||| |  ||||||||||||||
seq2  TCAGTTAGA-TTTTAGTAGGATGCCATTAGAGGG--TTTCTTCTTACTAT  138

seq1  TATTTTCACGAATCAAAGCGAGCATCTCTGGGCCCCAACT-CAGTTGATA  197
         ||||||||  |||||||||||||||| |||||||||| || ||||||
seq2  --ATTTCACGATCCAAAGCGAGCATCTCT-GGCCCCAACTCCAATTGATA  185

seq1  GTCAGTGTGGCCTAATGGGAAGTGTGAGGTTCA-GAGGCTGAGTGGCAGC  246
      ||||||||||||||||||| ||||||||||||| ||||||||||||||||
seq2  GTCAGTGTGGCCTAATGGG-AGTGTGAGGTTCAGGAGGCTGAGTGGCAGC  234

seq1  TACATTTACATTCTGGTTCCGCCATCTATTAGCCTTGGACCTTTGGAGAG  296
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACATTTACATTCTGGTTCCGCCATCTATTAGCCTTGGACCTTTGGAGAG  284

seq1  ACTCAGTTTCCTTGACCCTAG-AATAGAGAGATGATAATGTTAATATAAG  345
      ||||||||||||||||||||| ||||||||||||||||||||||||||||
seq2  ACTCAGTTTCCTTGACCCTAGAAATAGAGAGATGATAATGTTAATATAAG  334

seq1  TAAAACTCAAGTTATCTCTAAAGCGGAGACAGGAGATGTCAAAATGCCGC  395
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAAACTCAAGTTATCTCTAAAGCGGAGACAGGAGATGTCAAAATGCCGC  384

seq1  CATATACTTTCAAAGGTGTTGTCTTGAGCATCGATGATCTCCCAGCAAGA  445
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATATACTTTCAAAGGTGTTGTCTTGAGCATCGATGATCTCCCAGCAAGA  434

seq1  TCCCCTGTTACTCTAAGCATCCCATTCATTTCCTTCAATGTGGCATAGCT  495
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCCCTGTTACTCTAAGCATCCCATTCATTTCCTTCAATGTGGCATAGCT  484

seq1  CAGTCAGTATTCATGTGCCTATTTGCATGCTTGTTTGCTAGGTCTCTCTT  545
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGTCAGTATTCATGTGCCTATTTGCATGCTTGTTTGCTAGGTCTCTCTT  534

seq1  CCCTGTGGCTTGGTGTTTGCTTTATTCGCCATTCTGCTGGCATACTGTGG  595
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCTGTGGCTTGGTGTTTGCTTTATTCGCCATTCTGCTGGCATACTGTGG  584

seq1  GTACTCAATAAATCTCTGCTAAATGACCAGATGAAAGATAGGACAGCAAG  645
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTACTCAATAAATCTCTGCTAAATGACCAGATGAAAGATAGGACAGCAAG  634

seq1  AAACGGTAGCAGCCAGCAGGGCTGGCTCTCCTCTGTAAGCCCGCATCGTT  695
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAACGGTAGCAGCCAGCAGGGCTGGCTCTCCTCTGTAAGCCCGCATCGTT  684

seq1  TATTTGTTGCTTCATTTCATATTGCTTTTTCGCATCACCTGTTGTCTTGT  745
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATTTGTTGCTTCATTTCATATTGCTTTTTCGCATCACCTGTTGTCTTGT  734

seq1  TAATTAGCTCTTGTAAAATGGCTAATTATTTTCATATCCCCTCCAATAGG  795
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAATTAGCTCTTGTAAAATGGCTAATTATTTTCATATCCCCTCCAATAGG  784

seq1  TAGTCAGGCCCTTATGTGCCCACACCATAGATGGGAGCTCACAGATTGTA  845
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGTCAGGCCCTTATGTGCCCACACCATAGATGGGAGCTCACAGATTGTA  834

seq1  CAGTGCTTTGCATAGTAATTATTTGTCAAATAAATGACCCAGAAACAAAA  895
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGTGCTTTGCATAGTAATTATTTGTCAAATAAATGACCCAGAAACAAAA  884

seq1  GAAGATCCATTCTGGGGATTTCACTAAAGATTATAACTTTGGGACAATGT  945
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAGATCCATTCTGGGGATTTCACTAAAGATTATAACTTTGGGACAATGT  934

seq1  CATGAGGTCAGAGCATATTTAGAATGGTCTGTTGTCTCTGTGCAGTTCTA  995
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATGAGGTCAGAGCATATTTAGAATGGTCTGTTGTCTCTGTGCAGTTCTA  984

seq1  TATATTCTACCTACTACAATGCAATAATGATCATTGAAATTTGAAAAGAG  1045
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATATTCTACCTACTACAATGCAATAATGATCATTGAAATTTGAAAAGAG  1034

seq1  GGATGAAACTAGAACCATCCTGTTGTCACTGTCCTCCTCTGTGTGATTGT  1095
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGATGAAACTAGAACCATCCTGTTGTCACTGTCCTCCTCTGTGTGATTGT  1084

seq1  CTCAGTGGCTCTGTGTTTGTGACATGAGTCCATGGCCACACTCCATCCTA  1145
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCAGTGGCTCTGTGTTTGTGACATGAGTCCATGGCCACACTCCATCCTA  1134

seq1  TGATGGAGTTGTTGTGCCACTGAATTC  1172
      |||||||||||||||||||||||||||
seq2  TGATGGAGTTGTTGTGCCACTGAATTC  1161

seq1: chr5_96760540_96761681
seq2: B6Ng01-067H21.g_69_1189

seq1  GAATTCCTACCAGCTAAAGAGCCAGACAGGAGTTTGTCTACAGAGCAGCA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCCTACCAGCTAAAGAGCCAGACAGGAGTTTGTCTACAGAGCAGCA  50

seq1  TTTCCGTTCCGGCCGAAAGCACGGCTGTGCTGGCGGCCTGCTTTAAATCA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTCCGTTCCGGCCGAAAGCACGGCTGTGCTGGCGGCCTGCTTTAAATCA  100

seq1  TGCAGGCTGAGGCCAGGTCTCCACCCATTCCCAGATCGGCAATGTTGAGC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCAGGCTGAGGCCAGGTCTCCACCCATTCCCAGATCGGCAATGTTGAGC  150

seq1  GGGTTATTTTCCCTCCCGGACTCAGTTTTCTCGTTATATAAATAGGGTAA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGTTATTTTCCCTCCCGGACTCAGTTTTCTCGTTATATAAATAGGGTAA  200

seq1  TAATAATAATAGTACCCATCTCGTGGGGGTTCTGTGACAATTGCCTAAGA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAATAATAATAGTACCCATCTCGTGGGGGTTCTGTGACAATTGCCTAAGA  250

seq1  TAAAATAGAAGTGTTTAGCACAGCGACTTATGTGCAAGCTGTGCTCCGTG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAAATAGAAGTGTTTAGCACAGCGACTTATGTGCAAGCTGTGCTCCGTG  300

seq1  TTATTTGATACCATCTGTAATTCTAAAAATGTTCATTCCCCACCCTAACT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTATTTGATACCATCTGTAATTCTAAAAATGTTCATTCCCCACCCTAACT  350

seq1  CATAAAGTCTAGTTAGACAGTAACCAAACAAAATCAAGGACTAGATCTTT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATAAAGTCTAGTTAGACAGTAACCAAACAAAATCAAGGACTAGATCTTT  400

seq1  GCTTTCAGGTTGTGCCAAGTGAATCTGGGGTAAGGACTATAAATGGATGT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTTTCAGGTTGTGCCAAGTGAATCTGGGGTAAGGACTATAAATGGATGT  450

seq1  GTAACACTTGATTTATTTTATTAGCAATGCCACGTAATTATAAGGAGAGA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTAACACTTGATTTATTTTATTAGCAATGCCACGTAATTATAAGGAGAGA  500

seq1  AAGGAAAAGACAGTCGATAAGTAATTCTGGGAACCTTAATAAAGTATTTA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGGAAAAGACAGTCGATAAGTAATTCTGGGAACCTTAATAAAGTATTTA  550

seq1  TTCTTTTCTATATGACCTTGTAAACTAGTGAGCGCCACTTTTATGTCTTG  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTTTTCTATATGACCTTGTAAACTAGTGAGCGCCACTTTTATGTCTTG  600

seq1  TTAACAGGGACATTACCTTCAAGAGTTTGTATGTGGGACCCCCTTTAGTA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAACAGGGACATTACCTTCAAGAGTTTGTATGTGGGACCCCCTTTAGTA  650

seq1  ATTCCCTGCCTGTTGTTGATGTTAGGAAACCAATAATTAACCAAACAGAA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTCCCTGCCTGTTGTTGATGTTAGGAAACCAATAATTAACCAAACAGAA  700

seq1  GGTAGTATATTTTCAATTCTTGTGGAACTTTTCTCCTTAGTGTGTCTTGA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTAGTATATTTTCAATTCTTGTGGAACTTTTCTCCTTAGTGTGTCTTGA  750

seq1  AAGTAACTTTAGCTATCTATATTGGGAGTTAAGGAAAAACAGACACCTGT  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGTAACTTTAGCTATCTATATTGGGAGTTAAGGAAAAACAGACACCTGT  800

seq1  GAGCATGCGTACTTGTGCTAACACCCCCGAAGGAACCAAGTGAACTCTGG  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGCATGCGTACTTGTGCTAACACCCCCGAAGGAACCAAGTGAACTCTGG  850

seq1  GAGCAAGGTAGGAGGCATCAGGACAAGGGCAAGCTCCTGCCTGGCTCGAA  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGCAAGGTAGGAGGCATCAGGACAAGGGCAAGCTCCTGCCTGGCTCGAA  900

seq1  CAGTTCACGAGGGTGTAACATATGACGCTGTGAGCTGCCTTCGATGATGC  950
      |||||||||||||||||||||||||||||||||||||| |||||||||||
seq2  CAGTTCACGAGGGTGTAACATATGACGCTGTGAGCTGCTTTCGATGATGC  950

seq1  AGACCTTATTTTCTTGGTAAATGGTTCTTCAGGATGCTGTAGGAATAAGC  1000
      ||||||||||||| ||||||||||||||||||||||||||||  ||||||
seq2  AGACCTTATTTTC-TGGTAAATGGTTCTTCAGGATGCTGTAG--ATAAGC  997

seq1  TACACTCTAAGTTTCTGC-TTCTGAAAGGGCCGTGTGTGTGTCACATGCC  1049
      |||||||||   |||||| |||||||||||||||||||  |||||||| |
seq2  TACACTCTA--GTTCTGCTTTCTGAAAGGGCCGTGTGTTGGTCACATG-C  1044

seq1  TGACCG-TATTTCACACTTCTTTTTTCCCCTGCCTCCCTCCTTCCCTTTT  1098
      |||||| ||||   ||| |||||||  || ||| || ||||       ||
seq2  TGACCGATATT---CACCTCTTTTT--CCTTGCTTCTCTCC-------TT  1082

seq1  TCCACCAGTGCTGTGGATCACACCCAGCTAGGTAAGAGCTCTAC  1142
      || || || ||||| |||| || ||||||| |||||||||||||
seq2  TCAACAAG-GCTGT-GATC-CA-CCAGCTA-GTAAGAGCTCTAC  1121