BAC Information

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BAC

Clone NameB6Ng01-067L02
Chromosome5 (Build37)
Map Location 16,453,780 - 16,588,516
singlet/doubletdoublet
Overlap genenone
Upstream geneCacna2d1, LOC668121, Hgf, EG668131
Downstream geneLOC626390, LOC668142, LOC100041749, LOC100041832, Speer4f, EG630927, Sema3c, Cd36, Gnat3
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-067L02.bB6Ng01-067L02.g
ACCDH886496DH886497
length1,1061,121
definitionDH886496|Mus musculus domesticus DNA, BAC clone: B6Ng01-067L02, 5' end.DH886497|Mus musculus domesticus DNA, BAC clone: B6Ng01-067L02, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(16,587,373 - 16,588,516)(16,453,780 - 16,454,930)
sequence
gaattctttggactctgggatgaattagactccacttaggtagaggtaga
gacttgctaagtgtggctattcccctagtagtaagcttggtgcaaaaaca
atgttctaagggcaagatgaattgcaagttgaaaaccttatttgtttaaa
ttcaattatcacgagttttcatttgtataatctgggaaacactattactt
ctctggttcaaaaataccttatcttgttaaatgtagttttcaaagggtaa
cctagacaaaacacatttaaatcttaggaatgtacaagttcagattaaac
cggatctattaacaatttattataagtatgactctccagtgaaaaagatt
gttttcatgacaatgaggaggaatagatactgaaactatgctgtaatgca
tagaataactaaacatttcaagtcaacagccttttcaaaacaaaaatgct
tagagaaaattatattgagcttaaattagaagtaattaaatgtctagcat
aagtaaagcaaaaatcttaccaaagatgtcatcattagctggttactggt
gctgactaagcatacagctttactactttcttctttttaaggagacatct
tcttagaatcttagaatcttgatcagactataaatctattgtgtttgtgt
gacaaaataattttagtaaattacttgacataagtatggttctataaaat
gatagatttctttcatttatatctcttatatgaatttttaaggaataaaa
tactggagaaatttaaagaaggtgccacaacatgtaaaaatggaaaagag
ctgagtgtatcttatgctctaatttctggctgttcatgctttgaaatttt
tccttcttcctgggccactcaatcttttcccttttgtagtaggaaataag
cattgtatataaataagcaatttaagtttatcatccagaaaaaatttagt
ggagatttactgattacagttttcttaaactagtatgatacatatatttt
actgtcataccagagtaatgatagtctcccccgcaaaaagagaaaaaaaa
tgctgtcttcttattgtaatatttactagaaactttgctacttgtggtga
aattgc
gaattcactcctaggagttcgattccctcataggcagacaactaggaaga
gggccacatttgagtaggtagtagagagggagaacttccaaaatagctag
cttctttttcagccttgtaacccaagacataaccttgagagcttcaagca
agggcatctgaggacatttctccttctaagagggagcaacactaaattat
gagaggacaacacttcagagactctaaaaccctcagcagtctagaaaaga
cctggcaagatcttcctgaggcttctccttcatctctgtgttgcagaaag
aaggtctttctctgtggatgtttgctatatctgtttttttttttcattcc
aataaagacatttctttactagaaaaataattagtaaaaattaccaacat
aattgggatttaacaaaaaaataacgataagaataacaaaatccatataa
atatttatattgatatttgtctcaaataaaattgttttcacgacgtattt
tcaagtgtatatttgtgtatttaattgtatatcaaataatttccatagct
cttggtatcttaatgaaccaaatagatttctttcttacataccactccac
ttaatagatattaaatgtctaatccttccattgttattagacttttaaag
tagacaacgtgtataagctgtactttgaaaacaactctagtaatgataga
tgtgcatgaaaacctagaaatgtgtttcggttggcatagttactatttga
gtcatagactagttatcaacatctatactctatagaaaattattttaaac
tgttagtgaaactgaatgtgcactaatctgaagactaagacatctcaaac
agagtgatagagcatgttacacatgttagttataaggtctctgctgtttt
ggcactcagagacactgtatgggtctgaatttcaaataatttctgcaaat
aagtttcaagtctgcttgttccctcaaagtcattttctcatttcagctgc
tttcacagtagtgatcactgggaaaatgaaagtctttagtgttgattcct
cgctgattgggacgatgataactctactgcatattattgccgtcattgat
catagatattaccactagcat
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr5_16587373_16588516
seq2: B6Ng01-067L02.b_44_1149 (reverse)

seq1  GCAATGTCACACACAAGGTAGCAAAAGTTTTCTAAGTAAAACTATTACAA  50
      ||||| |||| ||||| ||||||||   ||||| ||||||  ||||||||
seq2  GCAATTTCAC-CACAA-GTAGCAAA--GTTTCT-AGTAAA--TATTACAA  43

seq1  TTAAAGAAGACAGCTATTTTTTTTTTTTTTTTTTTTTTTTTTTTGCGGGG  100
      |  |||||||||||              |||||||| | ||||||| |||
seq2  T--AAGAAGACAGC-------------ATTTTTTTTCTCTTTTTGC-GGG  77

seq1  GGAGACTTATTCATTTAACTCTTGGTATGAACAGTTAAAATATATTGTAT  150
      |||||||   |||||  |||| ||||||| |||| ||||||||| |||| 
seq2  GGAGACT--ATCATT--ACTC-TGGTATG-ACAG-TAAAATATA-TGTA-  118

seq1  TCATACTAGTTTTAAGAAAAACTGTTAATCAGTAAATCTCCACTAAATTT  200
      ||||||||| |||||| ||||||| |||||||||||||||||||||| ||
seq2  TCATACTAG-TTTAAG-AAAACTG-TAATCAGTAAATCTCCACTAAA-TT  164

seq1  TTTTCTGGATGATAAAACCTTAAATTGCTTATTTATATACAATGCTTATT  250
      ||||||||||||||||  ||||||||||||||||||||||||||||||||
seq2  TTTTCTGGATGATAAA--CTTAAATTGCTTATTTATATACAATGCTTATT  212

seq1  TCCTACTACAAAAGGGAAAAGATTGAGTGGCCCAGGAAGAAGGAAAAATT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCTACTACAAAAGGGAAAAGATTGAGTGGCCCAGGAAGAAGGAAAAATT  262

seq1  TCAAAGCATGAACAGCCAGAAATTAGAGCATAAGATACACTCAGCTCTTT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAAAGCATGAACAGCCAGAAATTAGAGCATAAGATACACTCAGCTCTTT  312

seq1  TCCATTTTTACATGTTGTGGCACCTTCTTTAAATTTCTCCAGTATTTTAT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCATTTTTACATGTTGTGGCACCTTCTTTAAATTTCTCCAGTATTTTAT  362

seq1  TCCTTAAAAATTCATATAAGAGATATAAATGAAAGAAATCTATCATTTTA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCTTAAAAATTCATATAAGAGATATAAATGAAAGAAATCTATCATTTTA  412

seq1  TAGAACCATACTTATGTCAAGTAATTTACTAAAATTATTTTGTCACACAA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGAACCATACTTATGTCAAGTAATTTACTAAAATTATTTTGTCACACAA  462

seq1  ACACAATAGATTTATAGTCTGATCAAGATTCTAAGATTCTAAGAAGATGT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACACAATAGATTTATAGTCTGATCAAGATTCTAAGATTCTAAGAAGATGT  512

seq1  CTCCTTAAAAAGAAGAAAGTAGTAAAGCTGTATGCTTAGTCAGCACCAGT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCCTTAAAAAGAAGAAAGTAGTAAAGCTGTATGCTTAGTCAGCACCAGT  562

seq1  AACCAGCTAATGATGACATCTTTGGTAAGATTTTTGCTTTACTTATGCTA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACCAGCTAATGATGACATCTTTGGTAAGATTTTTGCTTTACTTATGCTA  612

seq1  GACATTTAATTACTTCTAATTTAAGCTCAATATAATTTTCTCTAAGCATT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACATTTAATTACTTCTAATTTAAGCTCAATATAATTTTCTCTAAGCATT  662

seq1  TTTGTTTTGAAAAGGCTGTTGACTTGAAATGTTTAGTTATTCTATGCATT  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTGTTTTGAAAAGGCTGTTGACTTGAAATGTTTAGTTATTCTATGCATT  712

seq1  ACAGCATAGTTTCAGTATCTATTCCTCCTCATTGTCATGAAAACAATCTT  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAGCATAGTTTCAGTATCTATTCCTCCTCATTGTCATGAAAACAATCTT  762

seq1  TTTCACTGGAGAGTCATACTTATAATAAATTGTTAATAGATCCGGTTTAA  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTCACTGGAGAGTCATACTTATAATAAATTGTTAATAGATCCGGTTTAA  812

seq1  TCTGAACTTGTACATTCCTAAGATTTAAATGTGTTTTGTCTAGGTTACCC  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTGAACTTGTACATTCCTAAGATTTAAATGTGTTTTGTCTAGGTTACCC  862

seq1  TTTGAAAACTACATTTAACAAGATAAGGTATTTTTGAACCAGAGAAGTAA  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTGAAAACTACATTTAACAAGATAAGGTATTTTTGAACCAGAGAAGTAA  912

seq1  TAGTGTTTCCCAGATTATACAAATGAAAACTCGTGATAATTGAATTTAAA  1000
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGTGTTTCCCAGATTATACAAATGAAAACTCGTGATAATTGAATTTAAA  962

seq1  CAAATAAGGTTTTCAACTTGCAATTCATCTTGCCCTTAGAACATTGTTTT  1050
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAATAAGGTTTTCAACTTGCAATTCATCTTGCCCTTAGAACATTGTTTT  1012

seq1  TGCACCAAGCTTACTACTAGGGGAATAGCCACACTTAGCAAGTCTCTACC  1100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCACCAAGCTTACTACTAGGGGAATAGCCACACTTAGCAAGTCTCTACC  1062

seq1  TCTACCTAAGTGGAGTCTAATTCATCCCAGAGTCCAAAGAATTC  1144
      ||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTACCTAAGTGGAGTCTAATTCATCCCAGAGTCCAAAGAATTC  1106

seq1: chr5_16453780_16454930
seq2: B6Ng01-067L02.g_66_1186

seq1  GAATTCACTCCTAGGAGTTCGATTCCCTCATAGGCAGACAACTAGGAAGA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCACTCCTAGGAGTTCGATTCCCTCATAGGCAGACAACTAGGAAGA  50

seq1  GGGCCACATTTGAGTAGGTAGTAGAGAGGGAGAACTTCCAAAATAGCTAG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGCCACATTTGAGTAGGTAGTAGAGAGGGAGAACTTCCAAAATAGCTAG  100

seq1  CTTCTTTTTCAGCCTTGTAACCCAAGACATAACCTTGAGAGCTTCAAGCA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTCTTTTTCAGCCTTGTAACCCAAGACATAACCTTGAGAGCTTCAAGCA  150

seq1  AGGGCATCTGAGGACATTTCTCCTTCTAAGAGGGAGCAACACTAAATTAT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGGCATCTGAGGACATTTCTCCTTCTAAGAGGGAGCAACACTAAATTAT  200

seq1  GAGAGGACAACACTTCAGAGACTCTAAAACCCTCAGCAGTCTAGAAAAGA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGAGGACAACACTTCAGAGACTCTAAAACCCTCAGCAGTCTAGAAAAGA  250

seq1  CCTGGCAAGATCTTCCTGAGGCTTCTCCTTCATCTCTGTGTTGCAGAAAG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTGGCAAGATCTTCCTGAGGCTTCTCCTTCATCTCTGTGTTGCAGAAAG  300

seq1  AAGGTCTTTCTCTGTGGATGTTTGCTATATCTGTTTTTTTTTTTCATTCC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGGTCTTTCTCTGTGGATGTTTGCTATATCTGTTTTTTTTTTTCATTCC  350

seq1  AATAAAGACATTTCTTTACTAGAAAAATAATTAGTAAAAATTACCAACAT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATAAAGACATTTCTTTACTAGAAAAATAATTAGTAAAAATTACCAACAT  400

seq1  AATTGGGATTTAACAAAAAAATAACGATAAGAATAACAAAATCCATATAA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATTGGGATTTAACAAAAAAATAACGATAAGAATAACAAAATCCATATAA  450

seq1  ATATTTATATTGATATTTGTCTCAAATAAAATTGTTTTCACGACGTATTT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATATTTATATTGATATTTGTCTCAAATAAAATTGTTTTCACGACGTATTT  500

seq1  TCAAGTGTATATTTGTGTATTTAATTGTATATCAAATAATTTCCATAGCT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAAGTGTATATTTGTGTATTTAATTGTATATCAAATAATTTCCATAGCT  550

seq1  CTTGGTATCTTAATGAACCAAATAGATTTCTTTCTTACATACCACTCCAC  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTGGTATCTTAATGAACCAAATAGATTTCTTTCTTACATACCACTCCAC  600

seq1  TTAATAGATATTAAATGTCTAATCCTTCCATTGTTATTAGACTTTTAAAG  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAATAGATATTAAATGTCTAATCCTTCCATTGTTATTAGACTTTTAAAG  650

seq1  TAGACAACGTGTATAAGCTGTACTTTGAAAACAACTCTAGTAATGATAGA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGACAACGTGTATAAGCTGTACTTTGAAAACAACTCTAGTAATGATAGA  700

seq1  TGTGCATGAAAACCTAGAAATGTGTTTCGGTTGGCATAGTTACTATTTGA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTGCATGAAAACCTAGAAATGTGTTTCGGTTGGCATAGTTACTATTTGA  750

seq1  GTCATAGACTAGTTATCAACATCTATACTCTATAGAAAATTATTTTAAAC  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCATAGACTAGTTATCAACATCTATACTCTATAGAAAATTATTTTAAAC  800

seq1  TGTTAGTGAAACTGAATGTGCACTAATCTGAAGACTAAGACATCTCAAAC  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTTAGTGAAACTGAATGTGCACTAATCTGAAGACTAAGACATCTCAAAC  850

seq1  AGAGTGATAGAGCATGTTACACATGTTAGTTATAAGGTCTCTGCTGTTTT  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAGTGATAGAGCATGTTACACATGTTAGTTATAAGGTCTCTGCTGTTTT  900

seq1  GGCACTCAGAGAACAACTGTATGGGTCTGAATTTCAAATAATTTCTGCAA  950
      ||||||||||||   ||||||||||||||||||||||||||||||||| |
seq2  GGCACTCAGAGA--CACTGTATGGGTCTGAATTTCAAATAATTTCTGC-A  947

seq1  AATAAGTTTCCAAGTCTGCTTTGTTCACTCAAAAGTCATTTTCCTCAATT  1000
      ||||||||| ||||||||| |||||| ||| ||||||||||| |||| ||
seq2  AATAAGTTT-CAAGTCTGC-TTGTTCCCTC-AAAGTCATTTT-CTCATTT  993

seq1  CCAAGCTGCTTTCCACAGTAGTTGATCCAACTGGGAAATATGAAAGTCCT  1050
      |  ||||||||| |||||||| |||||  ||||||||| |||||||||  
seq2  C--AGCTGCTTT-CACAGTAG-TGATC--ACTGGGAAA-ATGAAAGTC--  1034

seq1  TTTAAGTGTTGAATTTCTTCGCTGATATGGGAACAGATGATAACTCTACT  1100
       || ||||||||  ||| |||||||| |||||   |||||||||||||| 
seq2  -TTTAGTGTTGA--TTCCTCGCTGAT-TGGGA--CGATGATAACTCTAC-  1077

seq1  GTGAATAATTATTGCCTGTCATGTGATCATTAGATATATACCACCTAGCA  1150
       || || ||||||||| ||||| |||||| ||||||| ||||| ||||||
seq2  -TGCAT-ATTATTGCC-GTCAT-TGATCA-TAGATAT-TACCA-CTAGCA  1120

seq1  T  1151
      |
seq2  T  1121