BAC Information

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BAC

Clone NameB6Ng01-068A17
Chromosome5 (Build37)
Map Location 138,786,116 - 138,787,264
singlet/doubletsinglet
Overlap genenone
Upstream geneEphb4, Zan, EG665591, Epo, Pop7, EG666372, Perq1, Gnb2, Actl6b, Trfr2, Mospd3, EG640050, Pcolce, Fbxo24, Lrch4, Sap25, Irs3, Hrbl, LOC624083, 6430598A04Rik, Tsc22d4, 2010007H12Rik, Bcdin3, Zcwpw1, Pilra, Pilrb1, Pilrb2, LOC100041016, LOC100041027, Cyp3a13, LOC666429, Gje1, Azgp1, EG243302, LOC100041050, Smok3a, Smok3b, Smok3c, Zkscan1, Zscan21, Zfp113, Cops6, Mcm7, Ap4m1, Taf6, 2610019P18Rik, BC038925, Gm454, BC055004, 0910001L09Rik, BC037034, Gal3st4, Gpc2, Stag3
Downstream geneGot2-ps1, 2610020C11Rik, LOC433955, EG666533, 1700123K08Rik, Zfp68, LOC665882, A430033K04Rik, BC004044, EG384244, Pdgfa, Prkar1b, Heatr2, Unc84a, 1110007L15Rik, Centa1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-068A17.bB6Ng01-068A17.g
ACCDH886750DH886751
length1,1371,240
definitionDH886750|Mus musculus domesticus DNA, BAC clone: B6Ng01-068A17, 5' end.DH886751|Mus musculus domesticus DNA, BAC clone: B6Ng01-068A17, 3' end.
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
gaattcatagcccagccctctgctgggagggggagctggaccatcctcag
gcactctccggaagctgccactggctgttgcttttcccaactactcacct
ctgggaagaccagcaactaggcccccaagaatcctccacagactcctctg
cctccagtcaccccgagtctgacttccttggtatagtctctgccaccctc
agccttattcccttgacaattctgcttgtggtgtctccatagtctttctc
accttccctatgtctgctgcatgtccccttgcaacttgctgggtgtctgt
accccagcatagccctcctggcagtctagattcataactaccacatcctg
agaagcctgtaccacattctgaattggcccaagatcttttcttcctcagt
ccaacctcactccaaccagtggcaagcctatggaagctgtgggactgagg
ggttgtgtgaccttgaatcaatggctagcctttagacctcaaaccattgc
ctagtgcattgttctcaggttctcaactccagcttcctggggccaccatg
cataggaagtatccaaaagactgccaacaatgacaacaagctatggaata
tgaaaagaaaatcaggtctgagatcttggccagcaggaccagggagaagg
cccttgtcagggtggtgtggtgtgggaaaggtctgattggaacagtggag
ccttcctccttctttctattgcatgagattttccaaagccccacagggga
gtcactttaaccatatcccccaaagcacaggacattaggtctgttagcaa
agttatggtgaagagggacaaggtttccaaaccgaggttccagccaacct
ctgcagaacaggggtcagtggcagaaaggattctgtagatccactcttaa
accgattcagcatctgtgaaataaataacttgctcacaagacagtgatgg
ctggaaagagtccaggttctgagagctgccacaaacagctcttcagagag
tgaaggacaagattaggcagatgtcaaagtgagagagaggagacagccag
ctatgcatgcctgttggtgccagctattgtgcttgccctccatatcccct
tcagatgtctagcacggatgcatacttggctgaaaaa
gaattccatgtgtagaagttacagtagacaaaattgatacatcagggcca
gaatatatcttcaacaaaatcatggaagaaataaattccctaacctaagg
aaagagatgactacaaacacaagtatcttaaagaacaccaaagagtggac
cagaaaatctgccaaccacataataaaaatcttaatgtactgaaacagaa
agattatataaaagttatgaggaaaaaggccaaccaacgtagaaaggcaa
acctaccggaattacacctaatttctcaacagagattctaaaatccacca
actcctgcacagatgttttgagatgctaagacaccatagatgtcagccca
gactattatacccaccaaagatttcaatcaccttgacagagaaaccaaga
tattccataacaaatcaaagtttgaataaataatatctttttattaatcc
agacatcctggggatactggaaagaatcctttaaaacaagaagagtaaca
gcaacccctgtcccctcctcccccaaaaatctagactgaatacataaaca
tttttcatcattttaccacactgaagaaacaaatctaatcagcctcatat
cccacacctgggattaaataaaaacatgttcacataactgttatttattt
atttatttatttatttatttatttatttaagaaaccaaagatctcactac
aaagatttctctggttgctattccagaggcagagtcctttctggtggaga
aagcatgtatgatgcaggtacaggaatttgagagatcatatttcaaccct
ccatgggattcaaggattttgtaatgtgcttcctacagcaaggttccact
tcctaaaggtaccatatccctccccccccccccagcccctgcaaagagtg
ctacctgctggggaccaagtggcactgctcattcagacctcttaaaccat
gcagcagacatgctggactagtgcacgtgaaatgaggggctagatatcta
aacagaggggaggtttctgtatttgtaataagtggcatacaagatacttc
tatttttgcatgtgtgtttgtgagtagttagagagttgtgagggcctgac
tggctgatggactgactcagcctcctgcagaagcgatacacagcatccta
cacaggcatccttgcatatcattaatcttttttaggatttatagattgat
gacgtcaagctatcccgtttctatagttcctcgaggtgat
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr5_138786116_138787264
seq2: B6Ng01-068A17.b_44_1180

seq1  GAATTCATAGCCCAGCCCTCTGCTGGGAGGGGGAGCTGGACCATCCTCAG  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCATAGCCCAGCCCTCTGCTGGGAGGGGGAGCTGGACCATCCTCAG  50

seq1  GCACTCTCCGGAAGCTGCCACTGGCTGTTGCTTTTCCCAACTACTCACCT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCACTCTCCGGAAGCTGCCACTGGCTGTTGCTTTTCCCAACTACTCACCT  100

seq1  CTGGGAAGACCAGCAACTAGGCCCCCAAGAATCCTCCACAGACTCCTCTG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGGGAAGACCAGCAACTAGGCCCCCAAGAATCCTCCACAGACTCCTCTG  150

seq1  CCTCCAGTCACCCCGAGTCTGACTTCCTTGGTATAGTCTCTGCCACCCTC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTCCAGTCACCCCGAGTCTGACTTCCTTGGTATAGTCTCTGCCACCCTC  200

seq1  AGCCTTATTCCCTTGACAATTCTGCTTGTGGTGTCTCCATAGTCTTTCTC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCCTTATTCCCTTGACAATTCTGCTTGTGGTGTCTCCATAGTCTTTCTC  250

seq1  ACCTTCCCTATGTCTGCTGCATGTCCCCTTGCAACTTGCTGGGTGTCTGT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCTTCCCTATGTCTGCTGCATGTCCCCTTGCAACTTGCTGGGTGTCTGT  300

seq1  ACCCCAGCATAGCCCTCCTGGCAGTCTAGATTCATAACTACCACATCCTG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCCCAGCATAGCCCTCCTGGCAGTCTAGATTCATAACTACCACATCCTG  350

seq1  AGAAGCCTGTACCACATTCTGAATTGGCCCAAGATCTTTTCTTCCTCAGT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAAGCCTGTACCACATTCTGAATTGGCCCAAGATCTTTTCTTCCTCAGT  400

seq1  CCAACCTCACTCCAACCAGTGGCAAGCCTATGGAAGCTGTGGGACTGAGG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAACCTCACTCCAACCAGTGGCAAGCCTATGGAAGCTGTGGGACTGAGG  450

seq1  GGTTGTGTGACCTTGAATCAATGGCTAGCCTTTAGACCTCAAACCATTGC  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTTGTGTGACCTTGAATCAATGGCTAGCCTTTAGACCTCAAACCATTGC  500

seq1  CTAGTGCATTGTTCTCAGGTTCTCAACTCCAGCTTCCTGGGGCCACCATG  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTAGTGCATTGTTCTCAGGTTCTCAACTCCAGCTTCCTGGGGCCACCATG  550

seq1  CATAGGAAGTATCCAAAAGACTGCCAACAATGACAACAAGCTATGGAATA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATAGGAAGTATCCAAAAGACTGCCAACAATGACAACAAGCTATGGAATA  600

seq1  TGAAAAGAAAATCAGGTCTGAGATCTTGGCCAGCAGGACCAGGGAGAAGG  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAAAAGAAAATCAGGTCTGAGATCTTGGCCAGCAGGACCAGGGAGAAGG  650

seq1  CCCTTGTCAGGGTGGTGTGGTGTGGGAAAGGTCTGATTGGAACAGTGGAG  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCTTGTCAGGGTGGTGTGGTGTGGGAAAGGTCTGATTGGAACAGTGGAG  700

seq1  CCTTCCTCCTTCTTTCTATTGCATGAGATTTTCCAAAGCCCCACAGGGGA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTTCCTCCTTCTTTCTATTGCATGAGATTTTCCAAAGCCCCACAGGGGA  750

seq1  GTCACTTTAACCATATCCCCCAAAGCACAGGACATTAGGTCTGTTAGCAA  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCACTTTAACCATATCCCCCAAAGCACAGGACATTAGGTCTGTTAGCAA  800

seq1  AGTTATGGTGAAGAGGGACAAGGTTTCCAAACCGAGGTTCCAGCCAACCT  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTTATGGTGAAGAGGGACAAGGTTTCCAAACCGAGGTTCCAGCCAACCT  850

seq1  CTGCAGAACAGGGGTCAGTGGCAGAAAGGATTCTGTAGATCCACTCTTAA  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGCAGAACAGGGGTCAGTGGCAGAAAGGATTCTGTAGATCCACTCTTAA  900

seq1  ACCGATTCAGCATCTGTGAAATAAAATAACTTGCTCACAAGACAGTGATG  950
      |||||||||||||||||||||| |||||||||||||||||||||||||||
seq2  ACCGATTCAGCATCTGTGAAAT-AAATAACTTGCTCACAAGACAGTGATG  949

seq1  GCTGGAAAGAGTCCAGGGTCTGAGAGCTGCCACAAACAGCTCTTCCAGAA  1000
      ||||||||||||||||| |||||||||||||||||||||||||| ||| |
seq2  GCTGGAAAGAGTCCAGGTTCTGAGAGCTGCCACAAACAGCTCTT-CAG-A  997

seq1  GAGTGAAGGACAAGATAAGGCAGAAGGTCAAAGTGAGAGAGAGGAGGACC  1050
      |||||||||||||||| |||||| | ||||||||||||||||||||   |
seq2  GAGTGAAGGACAAGATTAGGCAG-ATGTCAAAGTGAGAGAGAGGAG--AC  1044

seq1  AGCCAGCTATGGCATGCCTGTTGGTGGCCAGCTATGGTGCCTTGCCCTCC  1100
      |||||||||| |||||||||||||| ||||||||| ||| ||||||||||
seq2  AGCCAGCTAT-GCATGCCTGTTGGT-GCCAGCTATTGTG-CTTGCCCTCC  1091

seq1  ATATCCTCCTTCAGGATGTCTAAGCACGGATGCATACTGGGCTGGAAAA  1149
      |||||| |||||| ||||||| |||||||||||||||| ||||| ||||
seq2  ATATCC-CCTTCA-GATGTCT-AGCACGGATGCATACTTGGCTGAAAAA  1137