BAC Information

Click to search

BAC

Clone NameB6Ng01-068I20
Chromosome5 (Build37)
Map Location 24,474,833 - 24,667,094
singlet/doubletdoublet
Overlap genePrkag2
Upstream geneDrctnnb1a, LOC627317, Klhl7, LOC100042211, Nupl2, LOC434047, LOC100042244, Kcnh2, Nos3, Atg9b, Abcb8, Accn3, Cdk5, Slc4a2, Fastk, Tmub1, Centg3, Gbx1, Asb10, 4931409K22Rik, Abcf2, LOC100042348, Smarcd3, 1700022A21Rik, Nub1, 2810046M22Rik, Crygn, Rheb
Downstream geneGalntl5, E130116L18Rik, Galnt11, Mll3, Gm443, Xrcc2, LOC435835, Actr3b
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-068I20.bB6Ng01-068I20.g
ACCDH887105DH887106
length1,168957
definitionDH887105|Mus musculus domesticus DNA, BAC clone: B6Ng01-068I20, 5' end.DH887106|Mus musculus domesticus DNA, BAC clone: B6Ng01-068I20, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(24,665,912 - 24,667,094)(24,474,833 - 24,475,799)
sequence
gaattccaaaacagccagggctacacagaggaaccctgtctccaaaaaca
aaaaacaaaaccaaaagacaataacaacacaaacttttaacattagacgt
gtaacattaaagacaatagtttccaggggttggggagatggctcagttgg
taaagtctttgctgagcatagggacctgcgtttcatcccaagcatccttg
tgaaagccaggcaggaatggtgatgtgctttaatcacagagctgcataca
ggttcagtgagagatcttgtctcaaataaataaaagtgactaaggaggat
agctgacatcagcctctggcctccacgtgcatgtgcacccccgaccccct
aatgaccagtgactccccatatgtcaacggcaggcgcctacttaagactt
tatccaggaggatcttactgcaacgtttgacgctgttgccaggctgcctt
gtacagcactgggttctgaaagaaagaacactgtgatttattggcagagt
ctcccatgagcacaggaggttaaggatgtgcacagcccacatttgccatc
tggtgttttctccttaatggtctttcccactcacggcgccacatgtatct
gtgctaacgagtccgcctcaggttctggtgtgtctcaacctctgcattcc
atgccagtctgctcacgtctgcatactcctgttcttcagcataatgagcc
tgacaggcacagccaaacgtgtttccttcttccttcaggtctctcctgta
ttcgtccatgatgccaaaatcatcccggcttgctgtttgtcacccttcct
ctattgggaagaaaatgaaagcccatgtccccccctgaaacagctcattc
tcaggcctgctgcaccttccctagttagtgtgtaagactaggaggacggg
tggtcccttttccctgacttcttcctcagcatcccatagaggcaacccca
agccattgttgacttcttccttttttgtatattaaagaggactgagtgct
attatacaatagtataaagcaggctggtccagtcttggcctccatgaccc
ttatgtaacttattttttcaaacctatttttattgatggtccttgtctat
aggtttttttttcgcccaaactatggaccagaagcaggtagggaaggagg
ttatatcggcttacactt
gaattcaagtgattaagccctgcttaggaaacccttctgctctgagctgg
ctgggcaggagcgccaggtgttctctgcatgccaataagagataagcctg
tttccttttgagggacacaaaggaaacaaagggttgtaagcttgtttctt
ctgtgtatctacaccactgggcttatcacacacacacacacacacacaca
cacacacacacacacacacacacacacacccaaacgcacgcacgcacgca
cgcacacgcacaggcttagacatctatgagaactggaagttaagcctgct
gggaaggttgcctgcagagccctcactgctaggcaggattatccctgtag
gttaaacctccacaggtgcccacaaacatctggccagcactaaactgacc
tttggaaagccaactgtgatagacagacagacctgccttcttcctgggtc
caggctggagctgagctcagcacattcctgccagaagacaatgtgagtgt
atgtgtgcaggcaagatggcttggggctagctgcctgtgttgtcactggg
gtggcggcgtctgtcttggggggccttcaggaggctgtgatgaccctact
ctggttccacatgactctgagcataggagacctggcaggccagctcctcc
cttgtatgagcagctgtgataacggtagatgaggggaaatgggacttttg
agagtgaatgtgatgtgacagttgtggggtaggtgctgtataaaggtctg
gaaacaacactctgccttgcctgggctctgccatcgtgagcctcctagtg
gagcattctgggtttggatgactgtcgggtttcttgttgtgctcagtctg
gggtccaatcatgacggggaacatggtttttcttcactcacatcatggag
cagggggctggtttctgagccctttcctggcactcatcacagctgcccca
tggatgc
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr5_24665912_24667094
seq2: B6Ng01-068I20.b_41_1208 (reverse)

seq1  AAGTGTAAGCCGAATAAACCCTTTCCTCCCTAACTTGCTTCTTGGTCATG  50
      |||||||||||||   ||||   |||| ||  || ||||||| |  ||| 
seq2  AAGTGTAAGCCGATATAACC---TCCTTCCCTACCTGCTTCTGGTCCAT-  46

seq1  ATGTTTGTGCAGGAATAGAAACCCTGACTAAGACAAGAACCATCATTAAA  100
        ||||| ||  ||| | ||| |||     ||||||| ||||||| ||||
seq2  -AGTTTGGGC--GAAAAAAAAACCT---ATAGACAAGGACCATCAATAAA  90

seq1  AATAGGTTTTGAAAAAAATTAAGGTTACATAGGGGTCATGGAGG-CAAGA  149
      |||||| ||||||||||  ||| |||||||| |||||||||||| |||||
seq2  AATAGG-TTTGAAAAAA--TAA-GTTACATAAGGGTCATGGAGGCCAAGA  136

seq1  CTGGACCAGGCTGCTTTTTATACTATTGGTATAATAGCACTCAGTCCTCT  199
      ||||||||| ||||  ||||||||||| ||||||||||||||||||||||
seq2  CTGGACCAGCCTGC--TTTATACTATT-GTATAATAGCACTCAGTCCTCT  183

seq1  TTAATATACAAAAAAGGAAGGAAGTCAACAATGGCTTGGGGTTGCCTCTA  249
      ||||||||||||||||||| ||||||||||||||||||||||||||||||
seq2  TTAATATACAAAAAAGGAA-GAAGTCAACAATGGCTTGGGGTTGCCTCTA  232

seq1  TGGGATGCTGAGGAAGAAGTCAGGG-AAAGGGACCACCCGTCCTCCTAGT  298
      ||||||||||||||||||||||||| ||||||||||||||||||||||||
seq2  TGGGATGCTGAGGAAGAAGTCAGGGAAAAGGGACCACCCGTCCTCCTAGT  282

seq1  CTTACACACTAACTAGGG-AGGTGCAGCAGGCCTGAGAATGAGCTGTTTC  347
      |||||||||||||||||| |||||||||||||||||||||||||||||||
seq2  CTTACACACTAACTAGGGAAGGTGCAGCAGGCCTGAGAATGAGCTGTTTC  332

seq1  AGGGGGGGACATGGGCTTTCATTTTCTTCCCAATAGAGGAAGGGTGACAA  397
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGGGGGGACATGGGCTTTCATTTTCTTCCCAATAGAGGAAGGGTGACAA  382

seq1  ACAGCAAGCCGGGATGATTTTGGCATCATGGACGAATACAGGAGAGACCT  447
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAGCAAGCCGGGATGATTTTGGCATCATGGACGAATACAGGAGAGACCT  432

seq1  GAAGGAAGAAGGAAACACGTTTGGCTGTGCCTGTCAGGCTCATTATGCTG  497
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAGGAAGAAGGAAACACGTTTGGCTGTGCCTGTCAGGCTCATTATGCTG  482

seq1  AAGAACAGGAGTATGCAGACGTGAGCAGACTGGCATGGAATGCAGAGGTT  547
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGAACAGGAGTATGCAGACGTGAGCAGACTGGCATGGAATGCAGAGGTT  532

seq1  GAGACACACCAGAACCTGAGGCGGACTCGTTAGCACAGATACATGTGGCG  597
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGACACACCAGAACCTGAGGCGGACTCGTTAGCACAGATACATGTGGCG  582

seq1  CCGTGAGTGGGAAAGACCATTAAGGAGAAAACACCAGATGGCAAATGTGG  647
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCGTGAGTGGGAAAGACCATTAAGGAGAAAACACCAGATGGCAAATGTGG  632

seq1  GCTGTGCACATCCTTAACCTCCTGTGCTCATGGGAGACTCTGCCAATAAA  697
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTGTGCACATCCTTAACCTCCTGTGCTCATGGGAGACTCTGCCAATAAA  682

seq1  TCACAGTGTTCTTTCTTTCAGAACCCAGTGCTGTACAAGGCAGCCTGGCA  747
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCACAGTGTTCTTTCTTTCAGAACCCAGTGCTGTACAAGGCAGCCTGGCA  732

seq1  ACAGCGTCAAACGTTGCAGTAAGATCCTCCTGGATAAAGTCTTAAGTAGG  797
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAGCGTCAAACGTTGCAGTAAGATCCTCCTGGATAAAGTCTTAAGTAGG  782

seq1  CGCCTGCCGTTGACATATGGGGAGTCACTGGTCATTAGGGGGTCGGGGGT  847
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGCCTGCCGTTGACATATGGGGAGTCACTGGTCATTAGGGGGTCGGGGGT  832

seq1  GCACATGCACGTGGAGGCCAGAGGCTGATGTCAGCTATCCTCCTTAGTCA  897
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCACATGCACGTGGAGGCCAGAGGCTGATGTCAGCTATCCTCCTTAGTCA  882

seq1  CTTTTATTTATTTGAGACAAGATCTCTCACTGAACCTGTATGCAGCTCTG  947
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTTTATTTATTTGAGACAAGATCTCTCACTGAACCTGTATGCAGCTCTG  932

seq1  TGATTAAAGCACATCACCATTCCTGCCTGGCTTTCACAAGGATGCTTGGG  997
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGATTAAAGCACATCACCATTCCTGCCTGGCTTTCACAAGGATGCTTGGG  982

seq1  ATGAAACGCAGGTCCCTATGCTCAGCAAAGACTTTACCAACTGAGCCATC  1047
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGAAACGCAGGTCCCTATGCTCAGCAAAGACTTTACCAACTGAGCCATC  1032

seq1  TCCCCAACCCCTGGAAACTATTGTCTTTAATGTTACACGTCTAATGTTAA  1097
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCCCAACCCCTGGAAACTATTGTCTTTAATGTTACACGTCTAATGTTAA  1082

seq1  AAGTTTGTGTTGTTATTGTCTTTTGGTTTTGTTTTTTGTTTTTGGAGACA  1147
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGTTTGTGTTGTTATTGTCTTTTGGTTTTGTTTTTTGTTTTTGGAGACA  1132

seq1  GGGTTCCTCTGTGTAGCCCTGGCTGTTTTGGAATTC  1183
      ||||||||||||||||||||||||||||||||||||
seq2  GGGTTCCTCTGTGTAGCCCTGGCTGTTTTGGAATTC  1168

seq1: chr5_24474833_24475799
seq2: B6Ng01-068I20.g_71_1027

seq1  GAATTCAAGTGATTAAGCCCTGCTTAGGAAACCCTTCTGCTCTGAGCTGG  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCAAGTGATTAAGCCCTGCTTAGGAAACCCTTCTGCTCTGAGCTGG  50

seq1  CTGGGCAGGAGCGCCAGGTGTTCTCTGCATGCCAATAAGAGATAAGCCTG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGGGCAGGAGCGCCAGGTGTTCTCTGCATGCCAATAAGAGATAAGCCTG  100

seq1  TTTCCTTTTGAGGGACACAAAGGAAACAAAGGGTTGTAAGCTTGTTTCTT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTCCTTTTGAGGGACACAAAGGAAACAAAGGGTTGTAAGCTTGTTTCTT  150

seq1  CTGTGTATCTACACCACTGGGCTTATCACACACACACACACACACACACA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGTGTATCTACACCACTGGGCTTATCACACACACACACACACACACACA  200

seq1  CACACACACACACACACACACACACACACCCAAACGCACGCACGCACGCA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACACACACACACACACACACACACACACCCAAACGCACGCACGCACGCA  250

seq1  CGCACACGCACAGGCTTAGACATCTATGAGAACTGGAAGTTAAGCCTGCT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGCACACGCACAGGCTTAGACATCTATGAGAACTGGAAGTTAAGCCTGCT  300

seq1  GGGAAGGTTGCCTGCAGAGCCCTCACTGCTAGGCAGGATTATCCCTGTAG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGAAGGTTGCCTGCAGAGCCCTCACTGCTAGGCAGGATTATCCCTGTAG  350

seq1  GTTAAACCTCCACAGGTGCCCACAAACATCTGGCCAGCACTAAACTGACC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTAAACCTCCACAGGTGCCCACAAACATCTGGCCAGCACTAAACTGACC  400

seq1  TTTGGAAAGCCAACTGTGATAGACAGACAGACCTGCCTTCTTCCTGGGTC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTGGAAAGCCAACTGTGATAGACAGACAGACCTGCCTTCTTCCTGGGTC  450

seq1  CAGGCTGGAGCTGAGCTCAGCACATTCCTGCCAGAAGACAATGTGAGTGT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGGCTGGAGCTGAGCTCAGCACATTCCTGCCAGAAGACAATGTGAGTGT  500

seq1  ATGTGTGCAGGCAAGATGGCTTGGGGCTAGCTGCCTGTGTTGTCACTGGG  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGTGTGCAGGCAAGATGGCTTGGGGCTAGCTGCCTGTGTTGTCACTGGG  550

seq1  GTGGCGGCGTCTGTCTTGGGGGGCCTTCAGGAGGCTGTGATGACCCTACT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGGCGGCGTCTGTCTTGGGGGGCCTTCAGGAGGCTGTGATGACCCTACT  600

seq1  CTGGTTCCACATGACTCTGAGCATAGGAGACCTGGCAGGCCAGCTCCTCC  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGGTTCCACATGACTCTGAGCATAGGAGACCTGGCAGGCCAGCTCCTCC  650

seq1  CTTGTATGAGCAGCTGTGATAACGGTAGATGAGGGGAAATGGGACTTTTG  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTGTATGAGCAGCTGTGATAACGGTAGATGAGGGGAAATGGGACTTTTG  700

seq1  AGAGTGAAAGTGATGTGACAGTTGT-GGGTAGGTGCTGTATAAAGGTCTG  749
      |||||||| |||||||||||||||| ||||||||||||||||||||||||
seq2  AGAGTGAATGTGATGTGACAGTTGTGGGGTAGGTGCTGTATAAAGGTCTG  750

seq1  GAAACAAACACTCTGCC-TGCCTGGGCTCTGCCCATCGTGAGCCTCCTAG  798
      ||||| ||||||||||| ||||||||||||| ||||||||||||||||||
seq2  GAAAC-AACACTCTGCCTTGCCTGGGCTCTG-CCATCGTGAGCCTCCTAG  798

seq1  TGGAGCATTCTGGGTTTGGATGACTGTCGGGCTTCTTGCTGTGCTCAGGT  848
      ||||||||||||||||||||||||||||||| |||||| |||||||||  
seq2  TGGAGCATTCTGGGTTTGGATGACTGTCGGGTTTCTTGTTGTGCTCAG--  846

seq1  TCTGGGGTCCCAATCATGACGGGGAACCAGGTTTTTCTTTCCACTCACAT  898
      |||||||| ||||||||||||||||||  ||||||||||  |||||||| 
seq2  TCTGGGGT-CCAATCATGACGGGGAACATGGTTTTTCTT--CACTCACA-  892

seq1  TCAT-GAGCAGGGGGCCTGGTTCCTGAGCCCCTTCCCTGGCACCTCATCA  947
      |||| |||||||||| |||||| ||||| ||||| ||||||| |||||||
seq2  TCATGGAGCAGGGGG-CTGGTTTCTGAG-CCCTTTCCTGGCA-CTCATCA  939

seq1  CCAGCTGCCCCCATGGATGC  967
       |||||| ||||||||||||
seq2  -CAGCTG-CCCCATGGATGC  957