BAC Information

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BAC

Clone NameB6Ng01-068J23
Chromosome5 (Build37)
Map Location 6,167,963 - 6,321,258
singlet/doubletdoublet
Overlap genenone
Upstream genePftk1, 1700015F17Rik, Cldn12, Gtpbp10, LOC667699, EG667705, A330021E22Rik, Steap2, Steap1, LOC727711, LOC546854
Downstream geneLOC100041208, EG435830, LOC100042651, 4921511H03Rik
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-068J23.bB6Ng01-068J23.g
ACCDH887157DH887158
length1,1671,072
definitionDH887157|Mus musculus domesticus DNA, BAC clone: B6Ng01-068J23, 5' end.DH887158|Mus musculus domesticus DNA, BAC clone: B6Ng01-068J23, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(6,167,963 - 6,169,137)(6,320,170 - 6,321,258)
sequence
gaattcttttcatagagaatcaaccaagagtttatataaagttttcatta
gagcatttgctctttcctaacaattcacttaaatgctaagaaatgtttat
catccaggaaaactgtgaattccaatcacatcatgctaatttcgcttcct
ttacacacttgctcacatttgatttcaagtgaagcagatggttgtgttct
attttgctttccaactgtcagtcgaggtaattgaagtgaaaagaaactgt
ttgtcctggcagctctggaaggaccatgagcatctaatgggatgaaaaca
ttagctaccaagtccaggcctgaagcacctttatctcacctgtaatcaga
cccagctaagaatccaccatccagagataatgattttccatcactgttag
tctggttggagtccaaattgctttcctgaaagagacattactgcaaatta
tgtatggtctttccattgctccctctcctcctggtcaggtagttttcatg
ccattctggatttgtaggctgcagagtctgtctctaggagtttcctaagt
aaatagttgtgctttccattaagaacatcttttattgatgcatctaacat
gttttattcccatccatttgagctttagcttttaagagtaataaagaaat
ttttacttgcaggacttaatagggttcaatatttgctcatttggaagtta
cattattctactgtatttttattaccgtagaaccatttattttattttca
tgtcttgtgtgtgctaggcatgtgtgcatatgtgttcacttatgcacaca
tgtgcaaagaggcctgaaactgacgttagatgttttcctggatccatctc
cactttgtttactaggcaaggcctttcagttgaacccagaactctttcat
agtctaatctagactgactgattactattggtatctcctgagtatgcctt
ctcaggaattacagacagccaccatcctagcctagcctttatgtgggttc
atcttgatgagcagtgcctctcaagttggtacagcaagtggctttttaga
ctgatccatttcctcagccctgtagaaacacacaattagtacctcattag
caagtttaaattgagtgtaagagccattgccaagatctttagactccaca
tatatttgtgactgaag

gaattctacattaggctacctcagtggttctcaaacttcctaataacacc
gcaatttaatgcagttcctcatgtcatggtgaccccaaactataaaatta
tttttgtaattaactgtaattttctattatgaattataagataaatattt
gatatgtgactcctttgaaagagtcattaaatatccccaaaggggtcatg
acccgcaggttcagaaccattggaatattgaaataactagttctaaagtg
catattatctgatacccaggccaatgctggattataataacttgttttcg
catcacagactggaatacttaatttccaggactttttttttttttttttt
tttttttacaaaagcaaactactgttatagttattctcacctctgataat
cattcatgtcacagagatgtggtaagacaaagtagaagatattgccataa
agataaggtacagaatccaaggctcaagtcagtaatgtgaatatatgaag
aagacaaaacttcttccagaagtaatatcaatgacaagatgttataagca
gtagtacatgtacaggataaacaaacacatttaattgacaattaaatatt
taagtttaagaatgacacttaacatgagtaagtgttgaaaagcaaaataa
aaaggaggagtaaaattcccttatcaaacacaactgtgtcattttttaga
acaacatctaaatatgagactgttgcagtaaatctctccattccatatat
gccctagcaataaaaacacaacacagttaatatgattacaggctgtgtgc
ctagattgggcagacctaccgcacactaccatcttccacagcttatgaga
ccccttagaacttgcaatttctccaggccatgtgcttctgctctgctttt
ctccttcttcctcctcctccgtgtcctctccctctccactttctcctcct
tctctcccccaccttctgctatccttcccttttatctgtcatcatcagct
ctccttatttacaaatagtgtgatgcagttacagaatcacctgatgctga
ctcattcttgccaaatccctca
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr5_6167963_6169137
seq2: B6Ng01-068J23.b_49_1215

seq1  GAATTCTTTTCATAGAGAATCAACCAAGAGTTTATATAAAGTTTTCATTA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTTTTCATAGAGAATCAACCAAGAGTTTATATAAAGTTTTCATTA  50

seq1  GAGCATTTGCTCTTTCCTAACAATTCACTTAAATGCTAAGAAATGTTTAT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGCATTTGCTCTTTCCTAACAATTCACTTAAATGCTAAGAAATGTTTAT  100

seq1  CATCCAGGAAAACTGTGAATTCCAATCACATCATGCTAATTTCGCTTCCT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATCCAGGAAAACTGTGAATTCCAATCACATCATGCTAATTTCGCTTCCT  150

seq1  TTACACACTTGCTCACATTTGATTTCAAGTGAAGCAGATGGTTGTGTTCT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTACACACTTGCTCACATTTGATTTCAAGTGAAGCAGATGGTTGTGTTCT  200

seq1  ATTTTGCTTTCCAACTGTCAGTCGAGGTAATTGAAGTGAAAAGAAACTGT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTTGCTTTCCAACTGTCAGTCGAGGTAATTGAAGTGAAAAGAAACTGT  250

seq1  TTGTCCTGGCAGCTCTGGAAGGACCATGAGCATCTAATGGGATGAAAACA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGTCCTGGCAGCTCTGGAAGGACCATGAGCATCTAATGGGATGAAAACA  300

seq1  TTAGCTACCAAGTCCAGGCCTGAAGCACCTTTATCTCACCTGTAATCAGA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAGCTACCAAGTCCAGGCCTGAAGCACCTTTATCTCACCTGTAATCAGA  350

seq1  CCCAGCTAAGAATCCACCATCCAGAGATAATGATTTTCCATCACTGTTAG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCAGCTAAGAATCCACCATCCAGAGATAATGATTTTCCATCACTGTTAG  400

seq1  TCTGGTTGGAGTCCAAATTGCTTTCCTGAAAGAGACATTACTGCAAATTA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTGGTTGGAGTCCAAATTGCTTTCCTGAAAGAGACATTACTGCAAATTA  450

seq1  TGTATGGTCTTTCCATTGCTCCCTCTCCTCCTGGTCAGGTAGTTTTCATG  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTATGGTCTTTCCATTGCTCCCTCTCCTCCTGGTCAGGTAGTTTTCATG  500

seq1  CCATTCTGGATTTGTAGGCTGCAGAGTCTGTCTCTAGGAGTTTCCTAAGT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCATTCTGGATTTGTAGGCTGCAGAGTCTGTCTCTAGGAGTTTCCTAAGT  550

seq1  AAATAGTTGTGCTTTCCATTAAGAACATCTTTTATTGATGCATCTAACAT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATAGTTGTGCTTTCCATTAAGAACATCTTTTATTGATGCATCTAACAT  600

seq1  GTTTTATTCCCATCCATTTGAGCTTTAGCTTTTAAGAGTAATAAAGAAAT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTTTATTCCCATCCATTTGAGCTTTAGCTTTTAAGAGTAATAAAGAAAT  650

seq1  TTTTACTTGCAGGACTTAATAGGGTTCAATATTTGCTCATTTGGAAGTTA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTACTTGCAGGACTTAATAGGGTTCAATATTTGCTCATTTGGAAGTTA  700

seq1  CATTATTCTACTGTATTTTTATTACCGTAGAACCATTTATTTTATTTTCA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATTATTCTACTGTATTTTTATTACCGTAGAACCATTTATTTTATTTTCA  750

seq1  TGTCTTGTGTGTGCTAGGCATGTGTGCATATGTGTTCACTTATGCACACA  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTCTTGTGTGTGCTAGGCATGTGTGCATATGTGTTCACTTATGCACACA  800

seq1  TGTGCAAAGAGGCCTGAAACTGACGTTAGATGTTTTCCTGGATCCATCTC  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTGCAAAGAGGCCTGAAACTGACGTTAGATGTTTTCCTGGATCCATCTC  850

seq1  CACTTTGTTTACTAGGCAAGGCCTTTCAGTTGAACCCAGAACTCTTTCAT  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACTTTGTTTACTAGGCAAGGCCTTTCAGTTGAACCCAGAACTCTTTCAT  900

seq1  AGTCTAATCTAGACTGACTGATTACTATTGGTATCTCCTGAGTATGCCTT  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTCTAATCTAGACTGACTGATTACTATTGGTATCTCCTGAGTATGCCTT  950

seq1  CTCAGGAATTACAGACAGCCACCATCCTAGCCTAGCCTTTATGTGGGTTC  1000
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCAGGAATTACAGACAGCCACCATCCTAGCCTAGCCTTTATGTGGGTTC  1000

seq1  ATCTTGATGAGCAGTGCCTCTCAAGTTGGTACAGCAAGT-GCTTTATAGA  1049
      ||||||||||||||||||||||||||||||||||||||| ||||| ||||
seq2  ATCTTGATGAGCAGTGCCTCTCAAGTTGGTACAGCAAGTGGCTTTTTAGA  1050

seq1  CTGATCCATTTCCTCAGCCCCTGTAGAGACA-ACAATTAGTTACTCCATT  1098
      ||||||||||||||||| ||||||||| ||| |||||||| |||  ||||
seq2  CTGATCCATTTCCTCAG-CCCTGTAGAAACACACAATTAG-TACCTCATT  1098

seq1  AGCAAAGTTTAAATTGAGTGTAAAATGAG-CATTGCAAAGGATCTTATTA  1147
      ||| |||||||||||||||||||   ||| |||||| || |||||  |||
seq2  AGC-AAGTTTAAATTGAGTGTAA---GAGCCATTGCCAA-GATCT--TTA  1141

seq1  GACTTCACACATATATTTGTGACTGAAG  1175
      ||||   |||||||||||||||||||||
seq2  GACT--CCACATATATTTGTGACTGAAG  1167


seq1: chr5_6320170_6321258
seq2: B6Ng01-068J23.g_70_1141 (reverse)

seq1  TGAGGGATTTTGAGCAAGGAATGAGTCAGCACTCAGGTGATTTCCTGTAA  50
      ||||||||||   |||| ||||||||||||| ||||||||||  ||||||
seq2  TGAGGGATTT--GGCAA-GAATGAGTCAGCA-TCAGGTGATT--CTGTAA  44

seq1  ACCTGCATCACACCTTAATTTGTAAAATAAAGGAGAGCTGATGATTGGAC  100
        |||||||||||    |||||||||   ||||||||||||||||  |||
seq2  --CTGCATCACAC---TATTTGTAAA--TAAGGAGAGCTGATGAT--GAC  85

seq1  AGATAAAAGGGAAGGATAAGCAGAAGGTGGGGGAGAGAAGGAGGAGAAAG  150
      ||||||||||||||||| ||||||||||||||||||||||||||||||||
seq2  AGATAAAAGGGAAGGAT-AGCAGAAGGTGGGGGAGAGAAGGAGGAGAAAG  134

seq1  TGGAAGAGGGAGAGGACACGGAGGAGGAGGAAGAAGGAGAAAAGCAGAGC  200
      ||| ||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGG-AGAGGGAGAGGACACGGAGGAGGAGGAAGAAGGAGAAAAGCAGAGC  183

seq1  AGAAGCACATGGCCTGGAGAAATTGCAAGTTCTAAGGGGTCTCATAAGCT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAAGCACATGGCCTGGAGAAATTGCAAGTTCTAAGGGGTCTCATAAGCT  233

seq1  GTGGAAGATGGTAGTGTGCGGTAGGTCTGCCCAATCTAGGCACACAGCCT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGGAAGATGGTAGTGTGCGGTAGGTCTGCCCAATCTAGGCACACAGCCT  283

seq1  GTAATCATATTAACTGTGTTGTGTTTTTATTGCTAGGGCATATATGGAAT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTAATCATATTAACTGTGTTGTGTTTTTATTGCTAGGGCATATATGGAAT  333

seq1  GGAGAGATTTACTGCAACAGTCTCATATTTAGATGTTGTTCTAAAAAATG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAGAGATTTACTGCAACAGTCTCATATTTAGATGTTGTTCTAAAAAATG  383

seq1  ACACAGTTGTGTTTGATAAGGGAATTTTACTCCTCCTTTTTATTTTGCTT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACACAGTTGTGTTTGATAAGGGAATTTTACTCCTCCTTTTTATTTTGCTT  433

seq1  TTCAACACTTACTCATGTTAAGTGTCATTCTTAAACTTAAATATTTAATT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCAACACTTACTCATGTTAAGTGTCATTCTTAAACTTAAATATTTAATT  483

seq1  GTCAATTAAATGTGTTTGTTTATCCTGTACATGTACTACTGCTTATAACA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCAATTAAATGTGTTTGTTTATCCTGTACATGTACTACTGCTTATAACA  533

seq1  TCTTGTCATTGATATTACTTCTGGAAGAAGTTTTGTCTTCTTCATATATT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTTGTCATTGATATTACTTCTGGAAGAAGTTTTGTCTTCTTCATATATT  583

seq1  CACATTACTGACTTGAGCCTTGGATTCTGTACCTTATCTTTATGGCAATA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACATTACTGACTTGAGCCTTGGATTCTGTACCTTATCTTTATGGCAATA  633

seq1  TCTTCTACTTTGTCTTACCACATCTCTGTGACATGAATGATTATCAGAGG  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTTCTACTTTGTCTTACCACATCTCTGTGACATGAATGATTATCAGAGG  683

seq1  TGAGAATAACTATAACAGTAGTTTGCTTTTGTAAAAAAAAAAAAAAAAAA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAGAATAACTATAACAGTAGTTTGCTTTTGTAAAAAAAAAAAAAAAAAA  733

seq1  AAAAAAAGTCCTGGAAATTAAGTATTCCAGTCTGTGATGCGAAAACAAGT  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAAAAAGTCCTGGAAATTAAGTATTCCAGTCTGTGATGCGAAAACAAGT  783

seq1  TATTATAATCCAGCATTGGCCTGGGTATCAGATAATATGCACTTTAGAAC  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATTATAATCCAGCATTGGCCTGGGTATCAGATAATATGCACTTTAGAAC  833

seq1  TAGTTATTTCAATATTCCAATGGTTCTGAACCTGCGGGTCATGACCCCTT  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGTTATTTCAATATTCCAATGGTTCTGAACCTGCGGGTCATGACCCCTT  883

seq1  TGGGGATATTTAATGACTCTTTCAAAGGAGTCACATATCAAATATTTATC  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGGGATATTTAATGACTCTTTCAAAGGAGTCACATATCAAATATTTATC  933

seq1  TTATAATTCATAATAGAAAATTACAGTTAATTACAAAAATAATTTTATAG  1000
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTATAATTCATAATAGAAAATTACAGTTAATTACAAAAATAATTTTATAG  983

seq1  TTTGGGGTCACCATGACATGAGGAACTGCATTAAATTGCGGTGTTATTAG  1050
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTGGGGTCACCATGACATGAGGAACTGCATTAAATTGCGGTGTTATTAG  1033

seq1  GAAGTTTGAGAACCACTGAGGTAGCCTAATGTAGAATTC  1089
      |||||||||||||||||||||||||||||||||||||||
seq2  GAAGTTTGAGAACCACTGAGGTAGCCTAATGTAGAATTC  1072


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