BAC Information

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BAC

Clone NameB6Ng01-068N10
Chromosome5 (Build37)4 (Build37)
Map Location 123,169,880 - 123,170,808128,300,242 - 128,301,097
singlet/doubletsingletsinglet
Overlap geneP2rx4
Upstream geneAtxn2, Sh2b3, A230106M15Rik, Cutl2, LOC100042693, Myl2, Ccdc63, Ppp1cc, Hvcn1, Tect1, Pptc7, Rad9b, Vps29, 1500011H22Rik, Atpbd1c, Arpc3, Anapc7, Atp2a2, Ift81, P2rx7
Downstream geneCamkk2, Anapc5, Rnf34, Fbxl10, LOC100039895, Tmem142a, Morn3, LOC623672, BC022593, Rhof, 4932422M17Rik, Setd1b, Hpd, Psmd9, Wdr66, LOC100042824, Bcl7a, Mlxip, LOC673222, Il31, Lrrc43, B3gnt4, Diablo, Vps33a, Clip1, Zcchc8
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-068N10.bB6Ng01-068N10.g
ACCDH887313DH887314
length967858
definitionDH887313|Mus musculus domesticus DNA, BAC clone: B6Ng01-068N10, 5' end.DH887314|Mus musculus domesticus DNA, BAC clone: B6Ng01-068N10, 3' end.
singlet/doubletsingletsinglet
BLAST hituniqueunique
Map location.(123,169,880 - 123,170,808)(128,300,242 - 128,301,097)
sequence
gaattctctctctctctctctctctctctctctctctctctctattcaca
gcagcagccaagcccaaactcttttttttttttttaattttaaatttatt
tttttacactctatattttatccacccgcccccatccatcctccgactgt
tccatatcccatatctcctcctcactcccctgtctccatgtggatgtccc
caccccctaccccacctgacctctaaactccctggggcctccagtctctt
gagggttaggtgcatcatctctgaatgaacatagacccagcagtcctctg
ctgcatatgtattagtggcctcatatcagctgaaatatgctacctgcttg
gtggaccagtgttcgagagatctcaggggtccagatttattgagactgct
ggtcctcctacagggtcgcccttctcctcagcctctttcagcctttccct
agttcaccccacaggggtcatctgcttctgtccatttcctgcctcagctt
tccaagtattgggaacactggcataagctatcataacctggctttgggtg
tctcaagcaccatgcccacataacccccaaccccaacacacacacacaca
cacacacacacacacacacagacacacacacacacacacacacacacaca
cacacacacacacacacaatcagcacagaaaaagactgagccaggctagg
tctggggatcacagagtaccaaggttcctcttgcctctgccttcctcagg
gtagccttctctgcatccctgggctatgtctcccatcctggatgtgcagt
ccagacctgtcccatctctgtgtcacccgtgaactctcaaccctaaagca
tggcttctcagtttggactttggtcccatacctgcctcaggcgctaggtc
tgccatcatacagcccaaatgtacggctatggcaggggagggaggcctac
ttccaaagagacgggaa
gaattcatgttgaaaccacggtgatggtggtaaggacaatgatccccaag
agaaggggaacatgagagacaggctctacagctgccaggcctctctacct
gttggcatttctgagccagcccagggagcaagtgaggagcccagatgacc
atacctgccttactgaatcaagaagccaatcaccattcaggacacactct
gctcatgggacaaagtgtcaggacagagttagccagggaaaggatgagtt
ctagaaagcctcgtagggtctcctctgggatgaacaccacactgagtatt
caggatgaaaccctgaaggcggaggcaaaggacaactgagggagagctgt
aagagcattcttgaaaggctgggagacgcttatgtatgacaacccaaagt
aaggccatggttcaaaacagagcattctgctgagattaaatgacaaggtc
acagcttagcaataggatttgtgatggctattcttggttgtcaactacat
ctggaattaatgaaaatgcaaaaaatagagggcataccagtgatcttgct
tcattctcaaagtagaacgacacatgcctttaactccatcttgaggcagg
aaggcacagcctttaatctgagtcttgaggttgtaaccatcaccgtggtt
tctacatgaattcacatgctgccaatgaaagttgattagactgtaaaggt
tccaccctctgtggatgggattatggctcttataaagaaggtttatacac
tgttcactgccttgtctttcaaccccctgccatgtacctgcttttgggtc
atattgatatatgcttgctcagcaggctctgtgtctgcctgctctttgcc
tcactaac
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr5_123169880_123170808
seq2: B6Ng01-068N10.b_90_1011

seq1  TCACAGCAGCAGCCAAGCCCAAACTCTTTTTTTTTTTTTTAATTTTAAAT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCACAGCAGCAGCCAAGCCCAAACTCTTTTTTTTTTTTTTAATTTTAAAT  50

seq1  TTATTTTTTTACACTCTATATTTTATCCACCCGCCCCCATCCATCCTCCG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTATTTTTTTACACTCTATATTTTATCCACCCGCCCCCATCCATCCTCCG  100

seq1  ACTGTTCCATATCCCATATCTCCTCCTCACTCCCCTGTCTCCATGTGGAT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTGTTCCATATCCCATATCTCCTCCTCACTCCCCTGTCTCCATGTGGAT  150

seq1  GTCCCCACCCCCTACCCCACCTGACCTCTAAACTCCCTGGGGCCTCCAGT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCCCCACCCCCTACCCCACCTGACCTCTAAACTCCCTGGGGCCTCCAGT  200

seq1  CTCTTGAGGGTTAGGTGCATCATCTCTGAATGAACATAGACCCAGCAGTC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCTTGAGGGTTAGGTGCATCATCTCTGAATGAACATAGACCCAGCAGTC  250

seq1  CTCTGCTGCATATGTATTAGTGGCCTCATATCAGCTGAAATATGCTACCT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCTGCTGCATATGTATTAGTGGCCTCATATCAGCTGAAATATGCTACCT  300

seq1  GCTTGGTGGACCAGTGTTCGAGAGATCTCAGGGGTCCAGATTTATTGAGA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTTGGTGGACCAGTGTTCGAGAGATCTCAGGGGTCCAGATTTATTGAGA  350

seq1  CTGCTGGTCCTCCTACAGGGTCGCCCTTCTCCTCAGCCTCTTTCAGCCTT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGCTGGTCCTCCTACAGGGTCGCCCTTCTCCTCAGCCTCTTTCAGCCTT  400

seq1  TCCCTAGTTCACCCCACAGGGGTCATCTGCTTCTGTCCATTTCCTGCCTC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCCTAGTTCACCCCACAGGGGTCATCTGCTTCTGTCCATTTCCTGCCTC  450

seq1  AGCTTTCCAAGTATTGGGAACACTGGCATAAGCTATCATAACCTGGCTTT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCTTTCCAAGTATTGGGAACACTGGCATAAGCTATCATAACCTGGCTTT  500

seq1  GGGTGTCTCAAGCACCATGCCCACATAACCCCCAACCCCAACACACACAC  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGTGTCTCAAGCACCATGCCCACATAACCCCCAACCCCAACACACACAC  550

seq1  ACACACACACACACACACACACACAGACACACACACACACACACACACAC  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACACACACACACACACACACACACAGACACACACACACACACACACACAC  600

seq1  ACACACACACACACACACACACAATCAGCACAG-AAAAGACTGAGCCAGG  649
      ||||||||||||||||||||||||||||||||| ||||||||||||||||
seq2  ACACACACACACACACACACACAATCAGCACAGAAAAAGACTGAGCCAGG  650

seq1  CTAGGTCTGGGGATCACAGAGTACC-AGGTTCCTCTTGCCTCTGCCTTCC  698
      ||||||||||||||||||||||||| ||||||||||||||||||||||||
seq2  CTAGGTCTGGGGATCACAGAGTACCAAGGTTCCTCTTGCCTCTGCCTTCC  700

seq1  TCAGGGTAGCCTCCTCTGCATCCCTGGGCTTATGTCTCCCATCCTGGATG  748
      |||||||||||| |||||||||||||||| ||||||||||||||||||||
seq2  TCAGGGTAGCCTTCTCTGCATCCCTGGGC-TATGTCTCCCATCCTGGATG  749

seq1  TGCAGTCCAGACCTGT-CCATCACTGTGTCACCCGTGAAACTCCTCAACC  797
      |||||||||||||||| ||||| |||||||||||||| |||| |||||||
seq2  TGCAGTCCAGACCTGTCCCATCTCTGTGTCACCCGTG-AACT-CTCAACC  797

seq1  CATAAGCATGGCTTCTCAGCTTGGACTTGGGTCCCATACCTGCCTCAGGC  847
      |  |||||||||||||||| |||||||| |||||||||||||||||||||
seq2  CTAAAGCATGGCTTCTCAGTTTGGACTTTGGTCCCATACCTGCCTCAGGC  847

seq1  GCTAGGTCTGCCATCAGTACAGCCCAAAATGTACAGGCTAAGGCAGGGGG  897
      |||||||||||||||| |||||||| |||||||| ||||| |||| ||||
seq2  GCTAGGTCTGCCATCA-TACAGCCC-AAATGTAC-GGCTATGGCA-GGGG  893

seq1  AGGGAGGCCTAGCTTCCAAAGGAGACTGGGAA  929
      ||||||||||| |||||||| ||||| |||||
seq2  AGGGAGGCCTA-CTTCCAAA-GAGAC-GGGAA  922

seq1: chr4_128300242_128301097
seq2: B6Ng01-068N10.g_67_924

seq1  GAATTCATGTAGAAACCACGGTGATGGTGGTAAGGACAATGATCCCCAAG  50
      |||||||||| |||||||||||||||||||||||||||||||||||||||
seq2  GAATTCATGTTGAAACCACGGTGATGGTGGTAAGGACAATGATCCCCAAG  50

seq1  AGAAGGGGAACATGAGAGACAGGCTCTACAGCTGCCAGGCCTCTCTACCT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAAGGGGAACATGAGAGACAGGCTCTACAGCTGCCAGGCCTCTCTACCT  100

seq1  GTTGGCATTTCTGAGCCAGCCCAGGGAGCAAGTGAGGAGCCCAGATGACC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTGGCATTTCTGAGCCAGCCCAGGGAGCAAGTGAGGAGCCCAGATGACC  150

seq1  ATACCTGCCTTACTGAATCAAGAAGCCAATCACCAGTCAGGACACACGCT  200
      ||||||||||||||||||||||||||||||||||| ||||||||||| ||
seq2  ATACCTGCCTTACTGAATCAAGAAGCCAATCACCATTCAGGACACACTCT  200

seq1  GCTCATGGGACAAAGTGTCAGGACAGAGTTAGCCAGGGAAAGGATGAGTT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTCATGGGACAAAGTGTCAGGACAGAGTTAGCCAGGGAAAGGATGAGTT  250

seq1  CTAGAAAGCCTCGTAGGGTCTCCTCTGGGATGAACACCACACTGAGTATT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTAGAAAGCCTCGTAGGGTCTCCTCTGGGATGAACACCACACTGAGTATT  300

seq1  CAGGATGAAACCCTGAAGGCGGAGGCAAAGGACAACTGAGGGAGAGCTGT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGGATGAAACCCTGAAGGCGGAGGCAAAGGACAACTGAGGGAGAGCTGT  350

seq1  AAGAGCAGTCTTGAAAGGCTGGGAGACGCTTATGTATGACAACCCAAAGT  400
      ||||||| ||||||||||||||||||||||||||||||||||||||||||
seq2  AAGAGCATTCTTGAAAGGCTGGGAGACGCTTATGTATGACAACCCAAAGT  400

seq1  AAGGCCATGGTTCAAAACAGAGCATTCTGCTGAGATTAAATGACAAGGTC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGGCCATGGTTCAAAACAGAGCATTCTGCTGAGATTAAATGACAAGGTC  450

seq1  ACAGCTTAGCAATAGGATTTGTGATGGCTATTCTTGGTTGTCAACTACAT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAGCTTAGCAATAGGATTTGTGATGGCTATTCTTGGTTGTCAACTACAT  500

seq1  CTGGAATTAATGAAAATGCAAAAAATAGAGGGCATACCAGTGATCTTGCT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGGAATTAATGAAAATGCAAAAAATAGAGGGCATACCAGTGATCTTGCT  550

seq1  TCATTCTCAAAGTAGAACGACACATGCCTTTAACTCCATCTTGAGGCAGG  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCATTCTCAAAGTAGAACGACACATGCCTTTAACTCCATCTTGAGGCAGG  600

seq1  AAGGCACAGCCTTTAATCTGAGTCTTGAGGTTGTAACCATCACCGTGGTT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGGCACAGCCTTTAATCTGAGTCTTGAGGTTGTAACCATCACCGTGGTT  650

seq1  TCTACATGAATTCACATGCTGCCAATGAAAGTTGATTAGACTGTAAAGGT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTACATGAATTCACATGCTGCCAATGAAAGTTGATTAGACTGTAAAGGT  700

seq1  TCCA-CCTCTGTGGATGGGATTATGGCTCTTATAAAAGAAGGTTTATACA  749
      |||| |||||||||||||||||||||||||||| ||||||||||||||||
seq2  TCCACCCTCTGTGGATGGGATTATGGCTCTTAT-AAAGAAGGTTTATACA  749

seq1  CTGTTCAGCTGTCTTGTCTTTCAACCCCCTGCCATGTACCTGC-TTTGGG  798
      ||||||| ||| ||||||||||||||||||||||||||||||| ||||||
seq2  CTGTTCA-CTGCCTTGTCTTTCAACCCCCTGCCATGTACCTGCTTTTGGG  798

seq1  GCAGAATGA-AGATGCAGGCACAGCAGGCTCTGTGTCTGCCTGCTC-TTG  846
       || | ||| | ||||  || ||||||||||||||||||||||||| |||
seq2  TCATATTGATATATGCTTGCTCAGCAGGCTCTGTGTCTGCCTGCTCTTTG  848

seq1  CCTCACTAAC  856
      ||||||||||
seq2  CCTCACTAAC  858