BAC Information

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BAC

Clone NameB6Ng01-068P03
Chromosome5 (Build37)
Map Location 19,650,077 - 19,791,758
singlet/doubletdoublet
Overlap geneMagi2
Upstream gene4921504A21Rik
Downstream geneLOC100041850, Phtf2, LOC622367, Tmem60, Rsbn1l, Ptpn12, EG626903, A530088I07Rik
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-068P03.bB6Ng01-068P03.g
ACCDH887393DH887394
length1,1541,057
definitionDH887393|Mus musculus domesticus DNA, BAC clone: B6Ng01-068P03, 5' end.DH887394|Mus musculus domesticus DNA, BAC clone: B6Ng01-068P03, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(19,790,603 - 19,791,758)(19,650,077 - 19,650,985)
sequence
gaattcttttaaacagggtacaggtaaagtggctggccccaaatcttgtt
tgtgtttataccaagggccaggctggtcaagcatctgcctttgcttaatc
agcccactgagggctggcgatgaaggctccgctttagaaatgtgtccccc
tttataggttcctgtcagaaaggtaatcgtaacccaattaaataattccc
aaggaagccaagagcaaagcggtgaacacaaatgaggtgaaaggcacttg
gatcgctcctgcctgagcctgccagctctgtcacagggaaccctgaagag
gggacattttaatgaggagacagtccttgcaacagaccttcaccctcagc
tgctgattatacccgcagccatagcctggcaaatggcagaggagctgtag
ggaatttgaagaacttgattttcctgatgtgggaactcaaatgagccccg
tgggcataaagctaagaatgagtaaacaaaaatatccaaaagggattaat
aaagaaatggaaagaaaaagaaaaagaaaaagaaaaagaaaaacagagaa
attcattactgtcaagcctcttttcagtgtgttcatcattagatcacgtg
atttgagttttccctggtgagccccatctggtaacacaggttgctcttag
catttgctccactgtacttagctatctatagcccccatgtacagacaatg
cttctgcaggcctactatgtacctgtgacacatcacacctcctgccaagt
ccccaagcagcaccagatgtcttttcttttttctttttaattaattaatt
aatttattttttattagatattttctttatatacatttcaatgctatccc
aaaaagttccctataccttccctcacccctgctccccacccacccactcc
cacttcttgggccctggcagtcccctgtattgggcatataaagtttgcag
taccaaggggcctctcttccgactagaccatcttctgctacatatgcagc
tagagaaacgagctctggggtactggttagtcatattgttgttccatctt
atagggttgcagatgtttttcctttgaaacatttatgggagtttggtggc
ggtggtgctgcccacagaagggagataataccgtgtttattagtcactgt
aatt
gaattccagacagccagggctacacagaaaaatcctgtcttgaaaaccaa
aaataaataaataaataaataaataaataaataatattcctagctctatc
tcagtctttttccctcctccccagtttcatcttcctttccaagttctggc
attgatgctaatcttcattttcctttctcctcccaaagatatgttttctt
gtctcagactgaatttgctcaaacttgaaaatcatctgtttattcctgct
ttgtttatagtgaagcatataaaatatttaaaattacttttaaatttcat
ttattctccaaaagcttttattctctttttctcccaaaatgttaagcatg
catatcatgtgctctgatataatccacccccagttcctgaactatcaccc
acaatactccccctccaactttatgtgctctgttctttaaaacccactaa
gtccacatagtggcatctgcatgtgcatgggtggctactcatgctctgaa
actctgaagatagcagactcttcctcatttgggagccatcaatttccaat
ggctgttcagctatgggtgagactttgtgacctattcccatactgccatg
gtgggattttgtcccactggatcttgcacagtcttgtgtctactgtcatg
gctactgtaagtccataggtcctaaatgctataagttcatatgtgagtct
gttgcatcctgaaaacactactacattgatgtcactctctatgtctggct
cttgctgtctttgtacctatcctgggcttaggaagaaggtaggtgtgatg
aaattgacacagtgaggcactttataatctcttcttctcttcttggtatg
ttgaccatgtgtgtcaacttgcccatctactgcaagaagaagcattcctt
gatgagatctgagaggatacctagtctatctgtataactaaagtcattag
aagttgcttaattatatgtttatgtagcagaataatagtagtaggtctcc
cctagcatttctagcatgtctactacagttcttagcccagataatggtgc
agcatgg
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr5_19790603_19791758
seq2: B6Ng01-068P03.b_50_1203 (reverse)

seq1  AATTACAGTGACTTAATAAACACTGTATTTATCTCCTTTCTGTGGGCCAG  50
      |||||||||||| |||||||||| ||| |||||||| ||||||||| |||
seq2  AATTACAGTGAC-TAATAAACACGGTA-TTATCTCCCTTCTGTGGG-CAG  47

seq1  CACCACCGCCACCAAACTCCCATAAATGTCTCAAAGGAAAACATTCTGCA  100
      ||||||||||||||||||||||||||||| |||||||||||   ||||||
seq2  CACCACCGCCACCAAACTCCCATAAATGTTTCAAAGGAAAAACATCTGCA  97

seq1  ACCCTAT-AGGTGGGACAACAATATGAACTAACCAGTACCCCAGAGCTCG  149
      ||||||| || ||| ||||||||||| |||||||||||||||||||||||
seq2  ACCCTATAAGATGGAACAACAATATG-ACTAACCAGTACCCCAGAGCTCG  146

seq1  TGTCTCTAGCTGCATATGTAGCAGAAGATGGTCTAGTCGGAAGAGAGGCC  199
      | ||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTCTCTAGCTGCATATGTAGCAGAAGATGGTCTAGTCGGAAGAGAGGCC  196

seq1  CCTTGGTACTGCAAACTTTATATGCCCAATACAGGGGACTGCCAGGG-CC  248
      ||||||||||||||||||||||||||||||||||||||||||||||| ||
seq2  CCTTGGTACTGCAAACTTTATATGCCCAATACAGGGGACTGCCAGGGCCC  246

seq1  AAGAAGTGGGAGTGGGTGGGTGGGGAGCAGGGGTGAGGGAAGGTATAGGG  298
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGAAGTGGGAGTGGGTGGGTGGGGAGCAGGGGTGAGGGAAGGTATAGGG  296

seq1  AAC-TTTTGGGATAGCATTTGAAATGTATATAAAGAAAATATCTAATAAA  347
      ||| ||||||||||||| ||||||||||||||||||||||||||||||||
seq2  AACTTTTTGGGATAGCA-TTGAAATGTATATAAAGAAAATATCTAATAAA  345

seq1  AAATAAATTAATTAATTAATTAAAAAGAAAAAAGAAAAGACATCTGGTGC  397
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATAAATTAATTAATTAATTAAAAAGAAAAAAGAAAAGACATCTGGTGC  395

seq1  TGCTTGGGGACTTGGCAGGAGGTGTGATGTGTCACAGGTACATAGTAGGC  447
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCTTGGGGACTTGGCAGGAGGTGTGATGTGTCACAGGTACATAGTAGGC  445

seq1  CTGCAGAAGCATTGTCTGTACATGGGGGCTATAGATAGCTAAGTACAGTG  497
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGCAGAAGCATTGTCTGTACATGGGGGCTATAGATAGCTAAGTACAGTG  495

seq1  GAGCAAATGCTAAGAGCAACCTGTGTTACCAGATGGGGCTCACCAGGGAA  547
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGCAAATGCTAAGAGCAACCTGTGTTACCAGATGGGGCTCACCAGGGAA  545

seq1  AACTCAAATCACGTGATCTAATGATGAACACACTGAAAAGAGGCTTGACA  597
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACTCAAATCACGTGATCTAATGATGAACACACTGAAAAGAGGCTTGACA  595

seq1  GTAATGAATTTCTCTGTTTTTCTTTTTCTTTTTCTTTTTCTTTTTCTTTC  647
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTAATGAATTTCTCTGTTTTTCTTTTTCTTTTTCTTTTTCTTTTTCTTTC  645

seq1  CATTTCTTTATTAATCCCTTTTGGATATTTTTGTTTACTCATTCTTAGCT  697
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATTTCTTTATTAATCCCTTTTGGATATTTTTGTTTACTCATTCTTAGCT  695

seq1  TTATGCCCACGGGGCTCATTTGAGTTCCCACATCAGGAAAATCAAGTTCT  747
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTATGCCCACGGGGCTCATTTGAGTTCCCACATCAGGAAAATCAAGTTCT  745

seq1  TCAAATTCCCTACAGCTCCTCTGCCATTTGCCAGGCTATGGCTGCGGGTA  797
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAAATTCCCTACAGCTCCTCTGCCATTTGCCAGGCTATGGCTGCGGGTA  795

seq1  TAATCAGCAGCTGAGGGTGAAGGTCTGTTGCAAGGACTGTCTCCTCATTA  847
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAATCAGCAGCTGAGGGTGAAGGTCTGTTGCAAGGACTGTCTCCTCATTA  845

seq1  AAATGTCCCCTCTTCAGGGTTCCCTGTGACAGAGCTGGCAGGCTCAGGCA  897
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATGTCCCCTCTTCAGGGTTCCCTGTGACAGAGCTGGCAGGCTCAGGCA  895

seq1  GGAGCGATCCAAGTGCCTTTCACCTCATTTGTGTTCACCGCTTTGCTCTT  947
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAGCGATCCAAGTGCCTTTCACCTCATTTGTGTTCACCGCTTTGCTCTT  945

seq1  GGCTTCCTTGGGAATTATTTAATTGGGTTACGATTACCTTTCTGACAGGA  997
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCTTCCTTGGGAATTATTTAATTGGGTTACGATTACCTTTCTGACAGGA  995

seq1  ACCTATAAAGGGGGACACATTTCTAAAGCGGAGCCTTCATCGCCAGCCCT  1047
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCTATAAAGGGGGACACATTTCTAAAGCGGAGCCTTCATCGCCAGCCCT  1045

seq1  CAGTGGGCTGATTAAGCAAAGGCAGATGCTTGACCAGCCTGGCCCTTGGT  1097
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGTGGGCTGATTAAGCAAAGGCAGATGCTTGACCAGCCTGGCCCTTGGT  1095

seq1  ATAAACACAAACAAGATTTGGGGCCAGCCACTTTACCTGTACCCTGTTTA  1147
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAAACACAAACAAGATTTGGGGCCAGCCACTTTACCTGTACCCTGTTTA  1145

seq1  AAAGAATTC  1156
      |||||||||
seq2  AAAGAATTC  1154

seq1: chr5_19650077_19650985
seq2: B6Ng01-068P03.g_68_977

seq1  GAATTCCAGACAGCCAGGGCTACACAGAAAAATCCTGTCTTGAAAACCAA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCCAGACAGCCAGGGCTACACAGAAAAATCCTGTCTTGAAAACCAA  50

seq1  AAATAAATAAATAAATAAATAAATAAATAAATAATATTCCTAGCTCTATC  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATAAATAAATAAATAAATAAATAAATAAATAATATTCCTAGCTCTATC  100

seq1  TCAGTCTTTTTCCCTCCTCCCCAGTTTCATCTTCCTTTCCAAGTTCTGGC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAGTCTTTTTCCCTCCTCCCCAGTTTCATCTTCCTTTCCAAGTTCTGGC  150

seq1  ATTGATGCTAATCTTCATTTTCCTTTCTCCTCCCAAAGATATGTTTTCTT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTGATGCTAATCTTCATTTTCCTTTCTCCTCCCAAAGATATGTTTTCTT  200

seq1  GTCTCAGACTGAATTTGCTCAAACTTGAAAATCATCTGTTTATTCCTGCT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCTCAGACTGAATTTGCTCAAACTTGAAAATCATCTGTTTATTCCTGCT  250

seq1  TTGTTTATAGTGAAGCATATAAAATATTTAAAATTACTTTTAAATTTCAT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGTTTATAGTGAAGCATATAAAATATTTAAAATTACTTTTAAATTTCAT  300

seq1  TTATTCTCCAAAAGCTTTTATTCTCTTTTTCTCCCAAAATGTTAAGCATG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTATTCTCCAAAAGCTTTTATTCTCTTTTTCTCCCAAAATGTTAAGCATG  350

seq1  CATATCATGTGCTCTGATATAATCCACCCCCAGTTCCTGAACTATCACCC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATATCATGTGCTCTGATATAATCCACCCCCAGTTCCTGAACTATCACCC  400

seq1  ACAATACTCCCCCTCCAACTTTATGTGCTCTGTTCTTTAAAACCCACTAA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAATACTCCCCCTCCAACTTTATGTGCTCTGTTCTTTAAAACCCACTAA  450

seq1  GTCCACATAGTGGCATCTGCATGTGCATGGGTGGCTACTCATGCTCTGAA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCCACATAGTGGCATCTGCATGTGCATGGGTGGCTACTCATGCTCTGAA  500

seq1  ACTCTGAAGATAGCAGACTCTTCCTCATTTGGGAGCCATCAATTTCCAAT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTCTGAAGATAGCAGACTCTTCCTCATTTGGGAGCCATCAATTTCCAAT  550

seq1  GGCTGTTCAGCTATGGGTGAGACTTTGTGACCTATTCCCATACTGCCATG  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCTGTTCAGCTATGGGTGAGACTTTGTGACCTATTCCCATACTGCCATG  600

seq1  GTGGGATTTTGTCCCACTGGATCTTGCACAGTCTTGTGTCTACTGTCATG  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGGGATTTTGTCCCACTGGATCTTGCACAGTCTTGTGTCTACTGTCATG  650

seq1  GCTACTGTAAGTCCATAGGTCCTAAATGCTATAAGTTCATATGTGAGTCT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTACTGTAAGTCCATAGGTCCTAAATGCTATAAGTTCATATGTGAGTCT  700

seq1  GTTGCATCCTGAAAACACTACTACATTGATGTCACTCTCTATGTCTGGCT  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTGCATCCTGAAAACACTACTACATTGATGTCACTCTCTATGTCTGGCT  750

seq1  CTTGCTGTCTTTGTACCTATCCTGGGCTTAGGAAGAAGGTAGGTGTGATG  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTGCTGTCTTTGTACCTATCCTGGGCTTAGGAAGAAGGTAGGTGTGATG  800

seq1  AAATTGACACAGTGAGGCACTTCATAATCTCTTCTTCTCTTCTTGGTATG  850
      |||||||||||||||||||||| |||||||||||||||||||||||||||
seq2  AAATTGACACAGTGAGGCACTTTATAATCTCTTCTTCTCTTCTTGGTATG  850

seq1  TTGACCAATGTGTGTCAACTTG-CCATCTACTGCAAGAAGAAGCA-TCCT  898
      |||||| ||||||||||||||| |||||||||||||||||||||| ||||
seq2  TTGACC-ATGTGTGTCAACTTGCCCATCTACTGCAAGAAGAAGCATTCCT  899

seq1  TGATGAGATCT  909
      |||||||||||
seq2  TGATGAGATCT  910