BAC Information

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BAC

Clone NameB6Ng01-069D22
Chromosome5 (Build37)
Map Location 52,825,180 - 52,984,869
singlet/doubletdoublet
Overlap geneLOC100041805, Lgi2, LOC545750
Upstream genePpargc1a, Dhx15, Sod3, Gm447
Downstream geneD5Ertd135e, Pi4k2b, Zcchc4, Anapc4, Slc34a2, 2310045A20Rik, 1810013D10Rik, LOC100041198, LOC100041911, Rbpj
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-069D22.bB6Ng01-069D22.g
ACCDH887612DH887613
length401819
definitionDH887612|Mus musculus domesticus DNA, BAC clone: B6Ng01-069D22, 5' end.DH887613|Mus musculus domesticus DNA, BAC clone: B6Ng01-069D22, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(52,825,180 - 52,825,586)(52,984,053 - 52,984,869)
sequence
atcagattctcctcagtaaatgtaaatgtgtcattataaagtcacagaat
gtgaatgcacttaaaactggaaaactccttcatgaatactaacaaactct
gaaatcacagggaagatgactgcctacagctattgaaaacacccagcaag
ccaagattaaggatttcagttttttaaacggtaatgataaactcccatgt
aattttgtttagaaaaaaacatcaattagccacacagaaaaattagactt
cagatcaaacatggagcattataaactagtcacacagagcaggaaggagt
ttaggagtgagtagcattggacaggtggacgtgggctgcgctgctattta
gggatgagagtctcgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgt
g
gaattccatctccaccatgaatcagtgagtggagccatcctgatccataa
gtggaaggaaactcaaaagctctcactcctgaaatagaaccacagacaaa
ggagcactactgaccacactacagaccacactgtctgactctagaacatg
agaaaaaatcctggaggccaccccgacagctgctgaggacctgccatggg
tggtgcacgtgtgcctgctggcttgggctgtgcaggtgtgcctgctggct
tgggtggtgcaggtgtgcctggctggcttgggtggtacaggtgtgcttgc
tgccttgggtggtgcagttgtgcctggctggcttgggtggtgcaggtgtg
cctgctgccttgggtggtacaggtgtgcctggctggcttgggtggtgcag
gtgtacctggctggattaggtggtgcaggtgtgcctggctggcttgggtg
gtacaggtgtacatgctggcttgggtggtgcaggtgtgcctgctgccttg
ggtggtgcagttgtgcctggctggcttgggtggtgcaggtgtgcctgctg
ccttgggtggtacaggtgtgcctggctggcttgggtggtgcaggtgtgcc
tgctgcgttgggtggtacaggtgggcctgctgccttgggtggtgcaggtg
tgcctggctggcttgggtggtacaggtgtgcctgctgccttgggtggaca
ggtgtgccctgctgccttgggtggtacaggtgtgcctggctggcttgggt
ggtgcaagtgtgcctgcttgcctttgggtggtacaggtgtgctgctgcct
tgggtgggaacaggtgtgc
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr5_52825180_52825586
seq2: B6Ng01-069D22.b_48_454

seq1  GAATTCATCAGATTCTCCTCAGTAAATGTAAATGTGTCATTATAAAGTCA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCATCAGATTCTCCTCAGTAAATGTAAATGTGTCATTATAAAGTCA  50

seq1  CAGAATGTGAATGCACTTAAAACTGGAAAACTCCTTCATGAATACTAACA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGAATGTGAATGCACTTAAAACTGGAAAACTCCTTCATGAATACTAACA  100

seq1  AACTCTGAAATCACAGGGAAGATGACTGCCTACAGCTATTGAAAACACCC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACTCTGAAATCACAGGGAAGATGACTGCCTACAGCTATTGAAAACACCC  150

seq1  AGCAAGCCAAGATTAAGGATTTCAGTTTTTTAAACGGTAATGATAAACTC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCAAGCCAAGATTAAGGATTTCAGTTTTTTAAACGGTAATGATAAACTC  200

seq1  CCATGTAATTTTGTTTAGAAAAAAACATCAATTAGCCACACAGAAAAATT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCATGTAATTTTGTTTAGAAAAAAACATCAATTAGCCACACAGAAAAATT  250

seq1  AGACTTCAGATCAAACATGGAGCATTATAAACTAGTCACACAGAGCAGGA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGACTTCAGATCAAACATGGAGCATTATAAACTAGTCACACAGAGCAGGA  300

seq1  AGGAGTTTAGGAGTGAGTAGCATTGGACAGGTGGACGTGGGCTGCGCTGC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGAGTTTAGGAGTGAGTAGCATTGGACAGGTGGACGTGGGCTGCGCTGC  350

seq1  TATTTAGGGATGAGAGTCTCGTGTGTGTGTGTGTGTGTGTGTGTGTGTGT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATTTAGGGATGAGAGTCTCGTGTGTGTGTGTGTGTGTGTGTGTGTGTGT  400

seq1  GTGTGTG  407
      |||||||
seq2  GTGTGTG  407

seq1: chr5_52984053_52984869
seq2: B6Ng01-069D22.g_66_884 (reverse)

seq1  GCACACCTG-TACCACCCAAGGCAGCAGGCACACCTGTACCACCC-AAGG  48
      ||||||||| | ||||||||||||||| ||||||||||||||||| ||||
seq2  GCACACCTGTTCCCACCCAAGGCAGCA-GCACACCTGTACCACCCAAAGG  49

seq1  C-AGCAGGCACACCTGCACCACCCAAGCCAGCCAGGCACACCTGTACCAC  97
      | ||||||||||| ||||||||||||||||||||||||||||||||||||
seq2  CAAGCAGGCACACTTGCACCACCCAAGCCAGCCAGGCACACCTGTACCAC  99

seq1  CCAAGGCAGCA-GGCACACCTGTACCACCCAAGGCAGCAGGCACACCTGT  146
      ||||||||||| ||||||||||| ||||||||||||||||||||||||||
seq2  CCAAGGCAGCAGGGCACACCTGT-CCACCCAAGGCAGCAGGCACACCTGT  148

seq1  ACCACCCAAGCCAGCCAGGCACACCTGCACCACCCAAGGCAGCAGGCCCA  196
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCACCCAAGCCAGCCAGGCACACCTGCACCACCCAAGGCAGCAGGCCCA  198

seq1  CCTGTACCACCCAACGCAGCAGGCACACCTGCACCACCCAAGCCAGCCAG  246
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTGTACCACCCAACGCAGCAGGCACACCTGCACCACCCAAGCCAGCCAG  248

seq1  GCACACCTGTACCACCCAAGGCAGCAGGCACACCTGCACCACCCAAGCCA  296
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCACACCTGTACCACCCAAGGCAGCAGGCACACCTGCACCACCCAAGCCA  298

seq1  GCCAGGCACAACTGCACCACCCAAGGCAGCAGGCACACCTGCACCACCCA  346
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCAGGCACAACTGCACCACCCAAGGCAGCAGGCACACCTGCACCACCCA  348

seq1  AGCCAGCATGTACACCTGTACCACCCAAGCCAGCCAGGCACACCTGCACC  396
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCCAGCATGTACACCTGTACCACCCAAGCCAGCCAGGCACACCTGCACC  398

seq1  ACCTAATCCAGCCAGGTACACCTGCACCACCCAAGCCAGCCAGGCACACC  446
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCTAATCCAGCCAGGTACACCTGCACCACCCAAGCCAGCCAGGCACACC  448

seq1  TGTACCACCCAAGGCAGCAGGCACACCTGCACCACCCAAGCCAGCCAGGC  496
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTACCACCCAAGGCAGCAGGCACACCTGCACCACCCAAGCCAGCCAGGC  498

seq1  ACAACTGCACCACCCAAGGCAGCAAGCACACCTGTACCACCCAAGCCAGC  546
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAACTGCACCACCCAAGGCAGCAAGCACACCTGTACCACCCAAGCCAGC  548

seq1  CAGGCACACCTGCACCACCCAAGCCAGCAGGCACACCTGCACAGCCCAAG  596
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGGCACACCTGCACCACCCAAGCCAGCAGGCACACCTGCACAGCCCAAG  598

seq1  CCAGCAGGCACACGTGCACCACCCATGGCAGGTCCTCAGCAGCTGTCGGG  646
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAGCAGGCACACGTGCACCACCCATGGCAGGTCCTCAGCAGCTGTCGGG  648

seq1  GTGGCCTCCAGGATTTTTTCTCATGTTCTAGAGTCAGACAGTGTGGTCTG  696
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGGCCTCCAGGATTTTTTCTCATGTTCTAGAGTCAGACAGTGTGGTCTG  698

seq1  TAGTGTGGTCAGTAGTGCTCCTTTGTCTGTGGTTCTATTTCAGGAGTGAG  746
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGTGTGGTCAGTAGTGCTCCTTTGTCTGTGGTTCTATTTCAGGAGTGAG  748

seq1  AGCTTTTGAGTTTCCTTCCACTTATGGATCAGGATGGCTCCACTCACTGA  796
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCTTTTGAGTTTCCTTCCACTTATGGATCAGGATGGCTCCACTCACTGA  798

seq1  TTCATGGTGGAGATGGAATTC  817
      |||||||||||||||||||||
seq2  TTCATGGTGGAGATGGAATTC  819