BAC Information

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BAC

Clone NameB6Ng01-069G13
Chromosome5 (Build37)
Map Location 123,265,804 - 123,266,984
singlet/doubletsinglet
Overlap geneAnapc5
Upstream geneSh2b3, A230106M15Rik, Cutl2, LOC100042693, Myl2, Ccdc63, Ppp1cc, Hvcn1, Tect1, Pptc7, Rad9b, Vps29, 1500011H22Rik, Atpbd1c, Arpc3, Anapc7, Atp2a2, Ift81, P2rx7, P2rx4, Camkk2
Downstream geneRnf34, Fbxl10, LOC100039895, Tmem142a, Morn3, LOC623672, BC022593, Rhof, 4932422M17Rik, Setd1b, Hpd, Psmd9, Wdr66, LOC100042824, Bcl7a, Mlxip, LOC673222, Il31, Lrrc43, B3gnt4, Diablo, Vps33a, Clip1, Zcchc8, Rsrc2, Kntc1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-069G13.g
ACCDH887729
length1,143
definitionDH887729|Mus musculus domesticus DNA, BAC clone: B6Ng01-069G13, 3' end.
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
gaattctctcctctctgcagaatgggcagcaccaagcatcgtcgctggca
cacaggaagcacgcagcaaacttgttggacagctgagtctgggggactgt
attatgctcacaccaagagtttccttagatgaaaggaggcctagtggcat
ctcgcagcctcaggaacttcacactctacaggcctatactccttctgtgg
aacgtgaatgctgcggctgagccagaagttgaacaaaacacaaagctaaa
tttcaagtttgcctgttctgcaactggagttgcagaacatccaatcaaca
tttcaggactgaacggtccaggttctaaatgtttgtttctctgacgctga
acgttaccaaggccctattcagagaagacaggttctgtaccactgagaac
acccttggccatcttgaccttaaattaactggagcccccagcggtggctc
acagctgtcatcgctgtacatgaaggagaactgccctgaactgaaggctg
gtctggactgcagaatgaaaccctgtccaaaaaattaacagtggagcttc
ccttcaaaacagaagaactgtaaagtgggagacttacaaagcacccagta
tcacctcgtgaacttgtgtttcccttttccagaactaatactaatctgca
aaaaaaagaaattctgtggcccacgcctttaattccagtgcttgggaggc
agaggcaggcggatttctgagttcaaggccagcctggtctacaaagtgag
ttccaggacagccagggctatacagagaagtcctttctcaaaaaaccaaa
aagaaaaaaaaagaaaaagaacttccctatagaaagctaaaaatatccca
ataactacaaaaagaaagagaaaggggtaattttctccatgtaatataat
aaaattacaaaagtagaggcagctacatgtctagcatgcatgaaattgtg
ggtccaaaccctggagtaaaagaaactatacacaataaaaaattaaattt
ccttttcaaagcaaaaagggctccaactaacattctgaaaaatgctaaag
aaaggctcatggtgggcacaccaagcctcaaacagcccgcctgttagcaa
gcaaaccgagtctaaaatcaaacgcgaaatactggattttttt
quality valuesOpen.




Alignment Information

BAC End 1BAC End 2
seq1: chr5_123265804_123266984
seq2: B6Ng01-069G13.g_69_1211

seq1  GAATTCTCTCCTCTCTGCAGAATGGGCAGCACCAAGCATCGTCGCTGGCA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTCTCCTCTCTGCAGAATGGGCAGCACCAAGCATCGTCGCTGGCA  50

seq1  CACAGGAAGCACGCAGCAAACTTGTTGGACAGCTGAGTCTGGGGGACTGT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACAGGAAGCACGCAGCAAACTTGTTGGACAGCTGAGTCTGGGGGACTGT  100

seq1  ATTATGCTCACACCAAGAGTTTCCTTAGATGAAAGGAGGCCTAGTGGCAT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTATGCTCACACCAAGAGTTTCCTTAGATGAAAGGAGGCCTAGTGGCAT  150

seq1  CTCGCAGCCTCAGGAACTTCACACTCTACAGGCCTATACTCCTTCTGTGG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCGCAGCCTCAGGAACTTCACACTCTACAGGCCTATACTCCTTCTGTGG  200

seq1  AACGTGAATGCTGCGGCTGAGCCAGAAGTTGAACAAAACACAAAGCTAAA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACGTGAATGCTGCGGCTGAGCCAGAAGTTGAACAAAACACAAAGCTAAA  250

seq1  TTTCAAGTTTGCCTGTTCTGCAACTGGAGTTGCAGAACATCCAATCAACA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTCAAGTTTGCCTGTTCTGCAACTGGAGTTGCAGAACATCCAATCAACA  300

seq1  TTTCAGGACTGAACGGTCCAGGTTCTAAATGTTTGTTTCTCTGACGCTGA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTCAGGACTGAACGGTCCAGGTTCTAAATGTTTGTTTCTCTGACGCTGA  350

seq1  ACGTTACCAAGGCCCTATTCAGAGAAGACAGGTTCTGTACCACTGAGAAC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACGTTACCAAGGCCCTATTCAGAGAAGACAGGTTCTGTACCACTGAGAAC  400

seq1  ACCCTTGGCCATCTTGACCTTAAATTAACTGGAGCCCCCAGCGGTGGCTC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCCTTGGCCATCTTGACCTTAAATTAACTGGAGCCCCCAGCGGTGGCTC  450

seq1  ACAGCTGTCATCGCTGTACATGAAGGAGAACTGCCCTGAACTGAAGGCTG  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAGCTGTCATCGCTGTACATGAAGGAGAACTGCCCTGAACTGAAGGCTG  500

seq1  GTCTGGACTGCAGAATGAAACCCTGTCCAAAAAATTAACAGTGGAGCTTC  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCTGGACTGCAGAATGAAACCCTGTCCAAAAAATTAACAGTGGAGCTTC  550

seq1  CCTTCAAAACAGAAGAACTGTAAAGTGGGAGACTTACAAAGCACCCAGTA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTTCAAAACAGAAGAACTGTAAAGTGGGAGACTTACAAAGCACCCAGTA  600

seq1  TCACCTCGTGAACTTGTGTTTCCCTTTTCCAGAACTAATACTAATCTGCA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCACCTCGTGAACTTGTGTTTCCCTTTTCCAGAACTAATACTAATCTGCA  650

seq1  AAAAAAAGAAATTCTGTGGCCCACGCCTTTAATTCCAGTGCTTGGGAGGC  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAAAAAGAAATTCTGTGGCCCACGCCTTTAATTCCAGTGCTTGGGAGGC  700

seq1  AGAGGCAGGCGGATTTCTGAGTTCAAGGCCAGCCTGGTCTACAAAGTGAG  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAGGCAGGCGGATTTCTGAGTTCAAGGCCAGCCTGGTCTACAAAGTGAG  750

seq1  TTCCAGGACAGCCAGGGCTATACAGAGAAGTCCTTTCTCAAAAAACCAAA  800
      ||||||||||||||||||||||||||||||||||||||||||||||| ||
seq2  TTCCAGGACAGCCAGGGCTATACAGAGAAGTCCTTTCTCAAAAAACC-AA  799

seq1  AAAGAAAAAAAAAGAAAAAGAACTTCCCTATAGAAAGCTAAAAATATCCC  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAGAAAAAAAAAGAAAAAGAACTTCCCTATAGAAAGCTAAAAATATCCC  849

seq1  AATAACTACAAAAAGAAAGAGAAAGGGGTAATTTTTCTTCCAATGTAATA  900
      ||||||||||||||||||||||||||||||| ||||||  | ||||||||
seq2  AATAACTACAAAAAGAAAGAGAAAGGGGTAA-TTTTCT--CCATGTAATA  896

seq1  TAATAAAATTACAAAAGGTTAGAGGCAGCTACATGTCTAGCATGCATGAA  950
      |||||||||||||||||  |||||||||||||||||||||||||||||||
seq2  TAATAAAATTACAAAAG--TAGAGGCAGCTACATGTCTAGCATGCATGAA  944

seq1  ATTGTGGGTTCCAAACCCTTGGAAGTAAAAAGAAACTATACACATATAAA  1000
      |||||||| ||||||||||  | ||| ||||||||||||||||| |||||
seq2  ATTGTGGG-TCCAAACCCT--GGAGT-AAAAGAAACTATACACA-ATAAA  989

seq1  AAATTAAAATTTTCCTTTTCAAAAGTCAAAAAGGGCTCCAACTAACCATT  1050
      ||||||||  |||||||||||||   ||||||||||||||||||| ||||
seq2  AAATTAAA--TTTCCTTTTCAAA--GCAAAAAGGGCTCCAACTAA-CATT  1034

seq1  CTGAAATATAGCTAAAGAAAAGGCTCAATGGTGAGCACACACAAGCCCCA  1100
      |||||| || ||||||| |||||||| |||||| |||||| |||||| ||
seq2  CTGAAAAAT-GCTAAAG-AAAGGCTC-ATGGTGGGCACAC-CAAGCCTCA  1080

seq1  GACCAAGCCCAGCACTGTAAAGGCAAAGCAAACAAGGAGTTTCAAATAAT  1150
       ||  ||||| || |||| |  || ||||||||   |||| |   | |||
seq2  AAC--AGCCC-GC-CTGTTA--GC-AAGCAAAC--CGAGTCT---AAAAT  1118

seq1  CAAATCAGTCAAGAAATACATGGATTTTTTT  1181
      ||||     |  ||||||| |||||||||||
seq2  CAAA-----CGCGAAATAC-TGGATTTTTTT  1143