BAC Information

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BAC

Clone NameB6Ng01-071C12
Chromosome5 (Build37)
Map Location 23,322,314 - 23,442,800
singlet/doubletdoublet
Overlap geneRint1, 4933427G23Rik, Tomm7, LOC671410
Upstream geneLhfpl3, EG625219, LOC100042101, LOC100042082, 4930580E04Rik, BC050254, Srpk2, Pus7
Downstream geneDrctnnb1a, LOC627317, Klhl7, LOC100042211, Nupl2, LOC434047, LOC100042244, Kcnh2, Nos3, Atg9b, Abcb8, Accn3, Cdk5, Slc4a2, Fastk, Tmub1, Centg3, Gbx1, Asb10, 4931409K22Rik, Abcf2, LOC100042348, Smarcd3, 1700022A21Rik, Nub1, 2810046M22Rik, Crygn, Rheb, Prkag2
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-071C12.bB6Ng01-071C12.g
ACCDH888933DH888934
length1,1971,152
definitionDH888933|Mus musculus domesticus DNA, BAC clone: B6Ng01-071C12, 5' end.DH888934|Mus musculus domesticus DNA, BAC clone: B6Ng01-071C12, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(23,322,314 - 23,323,520)(23,441,638 - 23,442,800)
sequence
gaattctaaagataaagtaattaactttagggcatttttcaggaaatatt
aattaaaagttaaaatataaatatagagacatttatttctggtagagctt
tgagtattagacatcatgattttttaaactccagattttccccaggacgg
tatatttccccctcacatttaaaattgcgttttgaaactttaaggataca
gagtggtaagggtcactcttgtgaaggttacttgtttttccagatggttg
tccctgccgtctcagtcggaacaggcagtgatgtcgctgtccagctcagc
ctgcccgctcctgctgaccttacgggaccgtctgctccagctggagcagc
agctgtgtttctcgctattcagaatcttctggcaaatgctggcagagaag
ctggacctgtacatctaccaggaagtgagtcgggagacggggccggggcc
gagagggcggccgctgcatgaactgctctttgctgcagataacccttgcc
tgggatggcagccattacatggatcgctctttgttgcagataatccttgc
taaccacttcaacgaaggaggagcagcccagctgcagtttgatatgacaa
ggaacctctttcctttgttttctcactattgcaagagaccagaaaactat
tttaaacagtaagtccaatgtccagccataagtattggtggtgtatgcaa
acgctggaggagctggcttctttttaacagtttcagagttttgctgatat
cttttgtaatagcatcaattaaaatctggagctagagatgctcaacagtc
aagagcacttgatgctcttgcaaaggacaggggtttgttctcagcaccta
catggtaactcaaccatccttaactccagttccaggcatcttacactctg
gtctccacaggcatcagcacacacacagtgcatagacatgcatgcacgca
aaacatacacatgaaatttaaaatctaaaaagcaacaaattgctggctcc
ttgccagcagtccaggagagagagaaggtcccggtcctgccctgttgggt
ctcctctggggctaagtgggatggcaagtatcgatgcccaaaagaaacac
actgagcctagagttcttgtcgagcaggaactcaactttatgcatccagc
ctcttgcttatataagttcggaaccaggggaaggaattttggtgggg
gaattcaccactgaaaccatgtggccttgagttcactctgtgtgatagtg
gatagaacattcaatgtggctttaacttggatttttaaaattttcggtat
cagttattcatgctttctcaccattttcttggtaacccaatcatgagttt
gccaattttgtgttgtttctatttgggggcaaccacagatactatgaata
tttctgtgccagtttttacatggacaagcattttcatttgaactgaactg
ctggactctgtgtaacgtccttctgggaagtcttgggctgttctccagtg
tccatcccgctcctcactggcccaggccatggcagtccctccacttgccc
gccaagccagcgatgacacttctgttctcgaggccagcacattgcaagtg
gttttgctgtgcgcagcactctgctgcatgtccgcatgacatttttcagt
ctttaccggagactctcttttctttggctgctaaaatccgataccttgtt
cttcccattgactttgcatatttttgtgttttcacccaagaaacttttta
atctgaggtaactatgttttcttctagaagttttatagtttaaggtttta
cagttgcctgttgtatacaattcaacttaattttgaatatgatttaagga
atcagtgattaatctcctccctccataaataccaagcaccttctgttgaa
ctcctattgagttttaagtggcttggtgttaaaaataaatgtaactgacc
ctgtgtggggctctatctaactggcctgttctaggctctctgatctagca
gtcccttgtatcaatcttttgccagtactaacctgttttcattactgatg
ctcagtgtctcaagtagcagccagcttaaggctgggaaggggagacagag
tccaggtaccatttgatctcaaagctcaccactacaatgacagcgtcagt
ctacaacactcacatcaggtactgactcgaagcagtggcagagaggttca
cagcagacttgtaatctgtccatcactcggtgtgtcctcagttgcagctt
ctttctctgatcttcttatcctcctgcagcaggtgtcagtcagtgtcctg
ttggaaggcagacagccattaacaggtctacaatcacagcatcaaggtct
ct
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr5_23322314_23323520
seq2: B6Ng01-071C12.b_48_1244

seq1  GAATTCTAAAGATAAAGTAATTAACTTTAGGGCATTTTTCAGGAAATATT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTAAAGATAAAGTAATTAACTTTAGGGCATTTTTCAGGAAATATT  50

seq1  AATTAAAAGTTAAAATATAAATATAGAGACATTTATTTCTGGTAGAGCTT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATTAAAAGTTAAAATATAAATATAGAGACATTTATTTCTGGTAGAGCTT  100

seq1  TGAGTATTAGACATCATGATTTTTTAAACTCCAGATTTTCCCCAGGACGG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAGTATTAGACATCATGATTTTTTAAACTCCAGATTTTCCCCAGGACGG  150

seq1  TATATTTCCCCCTCACATTTAAAATTGCGTTTTGAAACTTTAAGGATACA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATATTTCCCCCTCACATTTAAAATTGCGTTTTGAAACTTTAAGGATACA  200

seq1  GAGTGGTAAGGGTCACTCTTGTGAAGGTTACTTGTTTTTCCAGATGGTTG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGTGGTAAGGGTCACTCTTGTGAAGGTTACTTGTTTTTCCAGATGGTTG  250

seq1  TCCCTGCCGTCTCAGTCGGAACAGGCAGTGATGTCGCTGTCCAGCTCAGC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCCTGCCGTCTCAGTCGGAACAGGCAGTGATGTCGCTGTCCAGCTCAGC  300

seq1  CTGCCCGCTCCTGCTGACCTTACGGGACCGTCTGCTCCAGCTGGAGCAGC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGCCCGCTCCTGCTGACCTTACGGGACCGTCTGCTCCAGCTGGAGCAGC  350

seq1  AGCTGTGTTTCTCGCTATTCAGAATCTTCTGGCAAATGCTGGCAGAGAAG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCTGTGTTTCTCGCTATTCAGAATCTTCTGGCAAATGCTGGCAGAGAAG  400

seq1  CTGGACCTGTACATCTACCAGGAAGTGAGTCGGGAGACGGGGCCGGGGCC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGGACCTGTACATCTACCAGGAAGTGAGTCGGGAGACGGGGCCGGGGCC  450

seq1  GAGAGGGCGGCCGCTGCATGAACTGCTCTTTGCTGCAGATAACCCTTGCC  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGAGGGCGGCCGCTGCATGAACTGCTCTTTGCTGCAGATAACCCTTGCC  500

seq1  TGGGATGGCAGCCATTACATGGATCGCTCTTTGTTGCAGATAATCCTTGC  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGGATGGCAGCCATTACATGGATCGCTCTTTGTTGCAGATAATCCTTGC  550

seq1  TAACCACTTCAACGAAGGAGGAGCAGCCCAGCTGCAGTTTGATATGACAA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAACCACTTCAACGAAGGAGGAGCAGCCCAGCTGCAGTTTGATATGACAA  600

seq1  GGAACCTCTTTCCTTTGTTTTCTCACTATTGCAAGAGACCAGAAAACTAT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAACCTCTTTCCTTTGTTTTCTCACTATTGCAAGAGACCAGAAAACTAT  650

seq1  TTTAAACAGTAAGTCCAATGTCCAGCCATAAGTATTGGTGGTGTATGCAA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTAAACAGTAAGTCCAATGTCCAGCCATAAGTATTGGTGGTGTATGCAA  700

seq1  ACGCTGGAGGAGCTGGCTTCTTTTTAACAGTTTCAGAGTTTTGCTGATAT  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACGCTGGAGGAGCTGGCTTCTTTTTAACAGTTTCAGAGTTTTGCTGATAT  750

seq1  CTTTTGTAATAGCATCAATTAAAATCTGGAGCTAGAGATGCTCAACAGTC  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTTTGTAATAGCATCAATTAAAATCTGGAGCTAGAGATGCTCAACAGTC  800

seq1  AAGAGCACTTGATGCTCTTGCAAAGGACAGGGGTTTGTTCTCAGCACCTA  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGAGCACTTGATGCTCTTGCAAAGGACAGGGGTTTGTTCTCAGCACCTA  850

seq1  CATGGTAACTCAACCATCCTTAACTCCAGTTCCAGGGCATCTTACACTCT  900
      |||||||||||||||||||||||||||||||||| |||||||||||||||
seq2  CATGGTAACTCAACCATCCTTAACTCCAGTTCCA-GGCATCTTACACTCT  899

seq1  GGTCTCCACAGGCATCAGGCACACACACAGTGCATAGACATGCATGCACG  950
      ||||||||||||||||| ||||||||||||||||||||||||||||||||
seq2  GGTCTCCACAGGCATCA-GCACACACACAGTGCATAGACATGCATGCACG  948

seq1  CAAAACATACACATGAAATTTAAAAATCTAAAAAGCAACAAATTGCTGGC  1000
      ||||||||||||||||||||| ||||||||||||||||||||||||||||
seq2  CAAAACATACACATGAAATTT-AAAATCTAAAAAGCAACAAATTGCTGGC  997

seq1  TCCTTGCCAGCAGGTCCAGGAGAGAGGAGAAAGGTCCCGGTCCTGCCCTG  1050
      |||||||||||| |||||||||||| ||| ||||||||||||||||||||
seq2  TCCTTGCCAGCA-GTCCAGGAGAGA-GAG-AAGGTCCCGGTCCTGCCCTG  1044

seq1  TTGGGGTCT-CTCTGGGGGCTAAGTGGGATGGCAAGTATCGATGGCCCAA  1099
      || |||||| |||| |||||||||||||||||||||||||||| ||||||
seq2  TT-GGGTCTCCTCT-GGGGCTAAGTGGGATGGCAAGTATCGAT-GCCCAA  1091

seq1  AAGAAACACACTGAGCCTAGAG-TCTTGTCGAAGCAGGAACTCAACTTTA  1148
      |||||||||||||||||||||| |||||||| ||||||||||||||||||
seq2  AAGAAACACACTGAGCCTAGAGTTCTTGTCG-AGCAGGAACTCAACTTTA  1140

seq1  TGGCAT-CAGCCTCTTGCTTATATAAGTTCAGAACACAGGGAGAGGGATT  1197
      | |||| ||||||||||||||||||||||| |||| ||||| || ||| |
seq2  T-GCATCCAGCCTCTTGCTTATATAAGTTCGGAAC-CAGGG-GAAGGAAT  1187

seq1  TTTGGTGGGG  1207
      ||||||||||
seq2  TTTGGTGGGG  1197

seq1: chr5_23441638_23442800
seq2: B6Ng01-071C12.g_68_1219 (reverse)

seq1  AGAGACCTTGATGCTGTGATGGTGAAGA-CTGTCA--TGCTGTCTTGCTC  47
      ||||||||||||||||||||  || ||| |||| |   |||||| |||  
seq2  AGAGACCTTGATGCTGTGAT--TGTAGACCTGTTAATGGCTGTC-TGCCT  47

seq1  TCCAACCAGGGGACAACTGACTGACACCTTGGCTGCAGAGAGATAAGAAG  97
      ||||||    |||| ||||||||||||||  |||||||   |||||||||
seq2  TCCAAC---AGGAC-ACTGACTGACACCT--GCTGCAGGAGGATAAGAAG  91

seq1  ATCCAGAGGAAAGAGCTGCCACCTGA-GACACACCGAGTGATGGACAGAT  146
      || ||||| ||  ||||| || |||| |||||||||||||||||||||||
seq2  AT-CAGAGAAAGAAGCTG-CAACTGAGGACACACCGAGTGATGGACAGAT  139

seq1  TACAAGTCTTGCCTGTGAACCTCTCTGCCACCTGCTTCGGAGTCAGTACC  196
      |||||||||   |||||||||||||||||| ||||||| |||||||||||
seq2  TACAAGTCT--GCTGTGAACCTCTCTGCCA-CTGCTTC-GAGTCAGTACC  185

seq1  TGATGTGAGTGTTGTAGACTGACGCTTGTCATTGTAGTGGTGAGCTTTGA  246
      ||||||||||||||||||||||||| ||||||||||||||||||||||||
seq2  TGATGTGAGTGTTGTAGACTGACGC-TGTCATTGTAGTGGTGAGCTTTGA  234

seq1  GATCAAATGGTACCTGGACTCTGTCTCCCCTTCCCAGCCTTAAGCTGGCT  296
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATCAAATGGTACCTGGACTCTGTCTCCCCTTCCCAGCCTTAAGCTGGCT  284

seq1  GCTACTTGAGACACTGAGCATCAGTAATGAAAACAGGTTAGTACTGGCAA  346
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTACTTGAGACACTGAGCATCAGTAATGAAAACAGGTTAGTACTGGCAA  334

seq1  AAGATTGATACAA-GGACTGCTAGATCAGAGAGCCTAGAACAGGCCAGTT  395
      ||||||||||||| ||||||||||||||||||||||||||||||||||||
seq2  AAGATTGATACAAGGGACTGCTAGATCAGAGAGCCTAGAACAGGCCAGTT  384

seq1  AGATAGAGCCCCACACAGGGTCAGTTACATTTATTTTTAACACCAAGCCA  445
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGATAGAGCCCCACACAGGGTCAGTTACATTTATTTTTAACACCAAGCCA  434

seq1  CTTAAAACTCAATAGGAGTTCAACAGAAGGTGCTTGGTATTTATGGAGGG  495
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTAAAACTCAATAGGAGTTCAACAGAAGGTGCTTGGTATTTATGGAGGG  484

seq1  AGGAGATTAATCACTGATTCCTTAAATCATATTCAAAATTAAGTTGAATT  545
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGAGATTAATCACTGATTCCTTAAATCATATTCAAAATTAAGTTGAATT  534

seq1  GTATACAACAGGCAACTGTAAAACCTTAAACTATAAAACTTCTAGAAGAA  595
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTATACAACAGGCAACTGTAAAACCTTAAACTATAAAACTTCTAGAAGAA  584

seq1  AACATAGTTACCTCAGATTAAAAAGTTTCTTGGGTGAAAACACAAAAATA  645
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACATAGTTACCTCAGATTAAAAAGTTTCTTGGGTGAAAACACAAAAATA  634

seq1  TGCAAAGTCAATGGGAAGAACAAGGTATCGGATTTTAGCAGCCAAAGAAA  695
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCAAAGTCAATGGGAAGAACAAGGTATCGGATTTTAGCAGCCAAAGAAA  684

seq1  AGAGAGTCTCCGGTAAAGACTGAAAAATGTCATGCGGACATGCAGCAGAG  745
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAGAGTCTCCGGTAAAGACTGAAAAATGTCATGCGGACATGCAGCAGAG  734

seq1  TGCTGCGCACAGCAAAACCACTTGCAATGTGCTGGCCTCGAGAACAGAAG  795
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCTGCGCACAGCAAAACCACTTGCAATGTGCTGGCCTCGAGAACAGAAG  784

seq1  TGTCATCGCTGGCTTGGCGGGCAAGTGGAGGGACTGCCATGGCCTGGGCC  845
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTCATCGCTGGCTTGGCGGGCAAGTGGAGGGACTGCCATGGCCTGGGCC  834

seq1  AGTGAGGAGCGGGATGGACACTGGAGAACAGCCCAAGACTTCCCAGAAGG  895
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTGAGGAGCGGGATGGACACTGGAGAACAGCCCAAGACTTCCCAGAAGG  884

seq1  ACGTTACACAGAGTCCAGCAGTTCAGTTCAAATGAAAATGCTTGTCCATG  945
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACGTTACACAGAGTCCAGCAGTTCAGTTCAAATGAAAATGCTTGTCCATG  934

seq1  TAAAAACTGGCACAGAAATATTCATAGTATCTGTGGTTGCCCCCAAATAG  995
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAAAACTGGCACAGAAATATTCATAGTATCTGTGGTTGCCCCCAAATAG  984

seq1  AAACAACACAAAATTGGCAAACTCATGATTGGGTTACCAAGAAAATGGTG  1045
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAACAACACAAAATTGGCAAACTCATGATTGGGTTACCAAGAAAATGGTG  1034

seq1  AGAAAGCATGAATAACTGATACCGAAAATTTTAAAAATCCAAGTTAAAGC  1095
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAAAGCATGAATAACTGATACCGAAAATTTTAAAAATCCAAGTTAAAGC  1084

seq1  CACATTGAATGTTCTATCCACTATCACACAGAGTGAACTCAAGGCCACAT  1145
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACATTGAATGTTCTATCCACTATCACACAGAGTGAACTCAAGGCCACAT  1134

seq1  GGTTTCAGTGGTGAATTC  1163
      ||||||||||||||||||
seq2  GGTTTCAGTGGTGAATTC  1152