BAC Information

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BAC

Clone NameB6Ng01-071E05
Chromosome7 (Build37)5 (Build37)
Map Location 6,343,641 - 6,344,8086,427,221 - 6,428,278
singlet/doubletsingletsinglet
Overlap geneZfp28
Upstream geneV1rd4, EG665163, V1rd10, EG630071, EG665255, EG636697, EG636705, LOC636731, LOC673215, V1rd2, LOC100041627, LOC100041637, V1rd1, LOC100041647, V1rd11, LOC100041666, V1rd6, EG384525, EG269859, Nlrp4c, Zfp787, Zfp444, Galp, Zfp371, EG627821, Zfp667, Zfp583, LOC100042467, LOC100042459, Zfp78
Downstream geneLOC100042450, Olfr1344, GA_x5J8B7W3DQU-679632-679375, Olfr1336, Olfr1346, Olfr5, Olfr1347, Olfr1348, Olfr1349, LOC665328, Olfr1350, Zim2, Zim1, Peg3, Usp29, LOC627961, Aurkc, LOC628030, LOC100041822, 5730403M16Rik, 2810409K11Rik, Vmn2r-ps35, Zfp418, BC023179, 6430701C03Rik, Clcn4-2, V2r15, LOC100041866, LOC100042577, Vmn2r31
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-071E05.bB6Ng01-071E05.g
ACCDH889012DH889013
length1,1571,142
definitionDH889012|Mus musculus domesticus DNA, BAC clone: B6Ng01-071E05, 5' end.DH889013|Mus musculus domesticus DNA, BAC clone: B6Ng01-071E05, 3' end.
singlet/doubletsingletsinglet
BLAST hituniqueunique
Map location.(6,343,641 - 6,344,808)(6,427,221 - 6,428,278)
sequence
gaattccttccctgagaagatacaggtatctaaccctctttataaggtcc
taaggaccgaatgtctagttaggtttctatcgctatgatacaataccatg
accaaaagcaacttggggaaaatgttttatttcatataacggcttgtcca
gggaagtcagggcagaaactcaagcaaggcaaggaatctagaggcaggag
ctgatgcagagactatagcggagtgctgcttactggcttgctcccatggc
cttttatatccccaagtttctggtatataatatcccgtgtttttatatct
aggaccacaggtctaggggtggcaccaatcacaatgggctgggccttccc
acattcatcactaattaagaaaatatcctacaggcttgcctgtaggcctt
tctggtaggattatttcctcaactgaggttctctgctctcaaatgactct
agcctgtatcaactcgacataaagctagccagcacataaatgtatggttc
caccaaagttcatccagggggactaatgcgttttattgggttttcttgca
gagcataggtcaggggatgctgggagaagtgtgggtgatctcaaaatggc
tgcatcagaaagtcttcacccattgtgaacagtgactcctccaccgtggc
gtgaatggagtccccttttaataagcctccccagcctgtatgctctctga
ccatggtgcagttagggcagaactgcattcaggtgtctgggagaaggggc
tggaatctcacgtgagggtcctgtggccctctcccacctctttaagagag
tgtcaccagtacacaggttgctcttttgtttgtttgtttttggctttttg
tttgtttttgttttgttttgttttctgtatagccctggctgtcctggaac
tcactctgtagaccaggctggcctcaaactcagaaatccacctgcctctg
cctttcaagtgctgggactaaaggcatgcactgccactgcctggctcaca
gttgttcttgctggtctcatgtagcagaaacagctgatctgatgaagaca
gcaagtgtttttctagaggaccccactctgtgaccctccccaccccccac
tgccacatgcaccaatccaaatagcattcacaatctacttactcattgct
caggtaa
gaattctctgatgtacactaagggactgccggtggctaaaggctttacca
catgcactgcactcataaggtttctctcccgtgtgacatctacgatgaca
gataagggacgacttggtcttgaatgtcttcccacactccacacactcgt
aaggcctctggccggtgtgaagtctccgatgttgagtacaggatgagtta
tcaccaaaggccttcccacattccaggcatttatagggcttctctccagt
atgaaccctctggtgttgaatgaggtgagtggtctggctgaaggccttgc
cacattccttgcactcgtatggcttctcccccgtatgagtcttctgatgt
tgtgcaaggtgagccttctgtgtaaatgctttcctacaaaccttacattc
gtaaggcttctctcctgtatgaattctctgatgcgtggcaagctgtgagc
tgatgctgaaagatttcccacattccccacactcaaagggcttctccccg
gtatggatcctccagtgactagcaaggtgtatattctgcctaaaagcttt
cccacactctttacatttaaaaggcttttctccagaatgcactcgttgat
gctgagtgagggatgcatggtggctgaaggcttttctgcaaatctcacac
tcgtacggtttctctccagtatgaatcctttggtgcacagtgagggatga
gccgtacctaaaggatttgtgacacacttcacacgtgtatggttttctct
ccagtgtgaatcctcctgtgttgattaagccctatgtggtcactgaaggc
tttcccacagtcgatgcaatcgaagggtttctccccagtgtgatagtacc
tccagtgacgaacgagcgaggtgttctgtatgaaagctttgccacactcc
gggcactcgtacggcttcttgcctgtatggcacctctggtgccgtgcgaa
ggaggacccgtcactgaaggcctttcccacactgattgcatttatagggc
ttctcctccagtatgaattctctggtgaacggtaggagagctctgggtga
agttttcttacatcattacatgtaaagttttttcctgacagatagtctta
cactactggattgagggaaacttactgagtccaagtatgact
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr7_6343641_6344808
seq2: B6Ng01-071E05.b_45_1201

seq1  GAATTCCTTCCCTGAGAAGATACAGGTATCTAACCCTCTTTATAAGGTCC  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCCTTCCCTGAGAAGATACAGGTATCTAACCCTCTTTATAAGGTCC  50

seq1  TAAGGACCGAATGTCTAGTTAGGTTTCTATCGCTATGATACAATACCATG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAGGACCGAATGTCTAGTTAGGTTTCTATCGCTATGATACAATACCATG  100

seq1  ACCAAAAGCAACTTGGGGAAAATGTTTTATTTCATATAACGGCTTGTCCA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCAAAAGCAACTTGGGGAAAATGTTTTATTTCATATAACGGCTTGTCCA  150

seq1  GGGAAGTCAGGGCAGAAACTCAAGCAAGGCAAGGAATCTAGAGGCAGGAG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGAAGTCAGGGCAGAAACTCAAGCAAGGCAAGGAATCTAGAGGCAGGAG  200

seq1  CTGATGCAGAGACTATAGCGGAGTGCTGCTTACTGGCTTGCTCCCATGGC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGATGCAGAGACTATAGCGGAGTGCTGCTTACTGGCTTGCTCCCATGGC  250

seq1  CTTTTATATCCCCAAGTTTCTGGTATATAATATCCCGTGTTTTTATATCT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTTTATATCCCCAAGTTTCTGGTATATAATATCCCGTGTTTTTATATCT  300

seq1  AGGACCACAGGTCTAGGGGTGGCACCAATCACAATGGGCTGGGCCTTCCC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGACCACAGGTCTAGGGGTGGCACCAATCACAATGGGCTGGGCCTTCCC  350

seq1  ACATTCATCACTAATTAAGAAAATATCCTACAGGCTTGCCTGTAGGCCTT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACATTCATCACTAATTAAGAAAATATCCTACAGGCTTGCCTGTAGGCCTT  400

seq1  TCTGGTAGGATTATTTCCTCAACTGAGGTTCTCTGCTCTCAAATGACTCT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTGGTAGGATTATTTCCTCAACTGAGGTTCTCTGCTCTCAAATGACTCT  450

seq1  AGCCTGTATCAACTCGACATAAAGCTAGCCAGCACATAAATGTATGGTTC  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCCTGTATCAACTCGACATAAAGCTAGCCAGCACATAAATGTATGGTTC  500

seq1  CACCAAAGTTCATCCAGGGGGACTAATGCGTTTTATTGGGTTTTCTTGCA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACCAAAGTTCATCCAGGGGGACTAATGCGTTTTATTGGGTTTTCTTGCA  550

seq1  GAGCATAGGTCAGGGGATGCTGGGAGAAGTGTGGGTGATCTCAAAATGGC  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGCATAGGTCAGGGGATGCTGGGAGAAGTGTGGGTGATCTCAAAATGGC  600

seq1  TGCATCAGAAAGTCTTCACCCATTGTGAACAGTGACTCCTCCACCGTGGC  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCATCAGAAAGTCTTCACCCATTGTGAACAGTGACTCCTCCACCGTGGC  650

seq1  GTGAATGGAGTCCCCTTTTAATAAGCCTCCCCAGCCTGTATGCTCTCTGA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGAATGGAGTCCCCTTTTAATAAGCCTCCCCAGCCTGTATGCTCTCTGA  700

seq1  CCATGGTGCAGTTAGGGCAGAACTGCATTCAGGTGTCTGGGAGAAGGGGC  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCATGGTGCAGTTAGGGCAGAACTGCATTCAGGTGTCTGGGAGAAGGGGC  750

seq1  TGGAATCTCAGGTGAGGGTCCTGTGGCCCTCTCCCACCTCTTTAAGAGAG  800
      |||||||||| |||||||||||||||||||||||||||||||||||||||
seq2  TGGAATCTCACGTGAGGGTCCTGTGGCCCTCTCCCACCTCTTTAAGAGAG  800

seq1  TGTCACCAGTACACAGGTTGCTCTTTTGTTTGTTTGTTTTTGGCTTTTTG  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTCACCAGTACACAGGTTGCTCTTTTGTTTGTTTGTTTTTGGCTTTTTG  850

seq1  TTTGTTTTTGTTTTGTTTTGTTTTCTGTATAGCCCTGGCTGTCCTGGAAC  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTGTTTTTGTTTTGTTTTGTTTTCTGTATAGCCCTGGCTGTCCTGGAAC  900

seq1  TCACTCTGTAGACCAGGCTGGCCTCAAACTCAGAAATCCACCTGCCTCTG  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCACTCTGTAGACCAGGCTGGCCTCAAACTCAGAAATCCACCTGCCTCTG  950

seq1  CCTTTCAAGTGCTGGGACTAAAGGCATGCACTGCCACTGCCTGGCTCACA  1000
      ||||||||||||||||||||||||||||||||||||||||||||||||| 
seq2  CCTTTCAAGTGCTGGGACTAAAGGCATGCACTGCCACTGCCTGGCTCAC-  999

seq1  AGTTGTTCTTGCTGGTCTCATGTAAGCAGACACAGCTGATCTGATGAAGA  1050
      ||||||||||||||||||||||| |||||| |||||||||||||||||||
seq2  AGTTGTTCTTGCTGGTCTCATGT-AGCAGAAACAGCTGATCTGATGAAGA  1048

seq1  CAGCAAAGTGTTTTTCTAGAGGACCCCACTCTGTGACCCTCCCCA-CCCC  1099
      |||| |||||||||||||||||||||||||||||||||||||||| ||||
seq2  CAGC-AAGTGTTTTTCTAGAGGACCCCACTCTGTGACCCTCCCCACCCCC  1097

seq1  CACTGCCACATGCACACATCCAAAATAAGGCCATTCACAATCTACCTTTA  1149
      |||||||||||||||  |||| |||||    ||||||||||||||  |||
seq2  CACTGCCACATGCACCAATCC-AAATA---GCATTCACAATCTAC--TTA  1141

seq1  ACCTCAATTGCTCAAGTAA  1168
        ||| |||||||| ||||
seq2  --CTC-ATTGCTCAGGTAA  1157

seq1: chr5_6427221_6428278
seq2: B6Ng01-071E05.g_174_1210

seq1  GGGATGACTTGGTCTTGAATGTCTTTCCACACTCCACACACTCCTAAGGC  50
      |||| |||||||||||||||||||| ||||||||||||||||| ||||||
seq2  GGGACGACTTGGTCTTGAATGTCTTCCCACACTCCACACACTCGTAAGGC  50

seq1  CTCAGGCCAGTGTGAAGTCTCTGATGTTGAGTACAGGATGAGTTATCACC  100
      ||| |||| |||||||||||| ||||||||||||||||||||||||||||
seq2  CTCTGGCCGGTGTGAAGTCTCCGATGTTGAGTACAGGATGAGTTATCACC  100

seq1  AAAGGCCTTCCCACATTCCAGGCATTTATAGGGCTTCTCTCCAGTATGAA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAGGCCTTCCCACATTCCAGGCATTTATAGGGCTTCTCTCCAGTATGAA  150

seq1  CCCTCTGGTGTTGAATGAGGTGAGTGGTCTGGCTGAAGGCCTTGCCACAT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCTCTGGTGTTGAATGAGGTGAGTGGTCTGGCTGAAGGCCTTGCCACAT  200

seq1  TCCTTGCACTCGTATGGCTTCTCCCCCCGTATGAGTCTTCTGATGTTGTG  250
      |||||||||||||||||||||| |||||||||||||||||||||||||||
seq2  TCCTTGCACTCGTATGGCTTCT-CCCCCGTATGAGTCTTCTGATGTTGTG  249

seq1  CAAGGTGAGCCTTCTGCGTAAATGCTTTCCTACAAACCTTACATTCATAA  300
      |||||||||||||||| ||||||||||||||||||||||||||||| |||
seq2  CAAGGTGAGCCTTCTGTGTAAATGCTTTCCTACAAACCTTACATTCGTAA  299

seq1  GGCTTCTCTCCTGTATGAATTCTCTGATGCGTGGCAAGCTGTGAGCTGAT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCTTCTCTCCTGTATGAATTCTCTGATGCGTGGCAAGCTGTGAGCTGAT  349

seq1  GCTGAAAGATTTCCCACATTCCCCACACTCAAAGGGCTTCTCCCCGGTAT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTGAAAGATTTCCCACATTCCCCACACTCAAAGGGCTTCTCCCCGGTAT  399

seq1  GGATTCTCCAGTGACTAGCAAGGTGTATATTCTGCCTAAAAGCTTTCCCA  450
      |||| |||||||||||||||||||||||||||||||||||||||||||||
seq2  GGATCCTCCAGTGACTAGCAAGGTGTATATTCTGCCTAAAAGCTTTCCCA  449

seq1  CACTCTTTACATTTAAAAGGCTTTTCTCCAGAATGCACTTGTTGATGCTG  500
      ||||||||||||||||||||||||||||||||||||||| ||||||||||
seq2  CACTCTTTACATTTAAAAGGCTTTTCTCCAGAATGCACTCGTTGATGCTG  499

seq1  AGTGAGGGATGCATGGTGGCTGAAGGCTTTTCTGCAAATCTCACACTCAT  550
      |||||||||||||||||||||||||||||||||||||||||||||||| |
seq2  AGTGAGGGATGCATGGTGGCTGAAGGCTTTTCTGCAAATCTCACACTCGT  549

seq1  ATGGTTTCTCTCCAGTATGAATCCTTTGGTGCACAGTGAGGGATGAGCCG  600
      | ||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACGGTTTCTCTCCAGTATGAATCCTTTGGTGCACAGTGAGGGATGAGCCG  599

seq1  TACCTAAAGGATTTGTGACACACTTCACACGTGTATGG-TTTCTCTCCAG  649
      |||||||||||||||||||||||||||||||||||||| |||||||||||
seq2  TACCTAAAGGATTTGTGACACACTTCACACGTGTATGGTTTTCTCTCCAG  649

seq1  TGTGAATCCTCCTGTGTTGATTAAGCCCTATGTGGTCACTGAAGGCTTTC  699
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTGAATCCTCCTGTGTTGATTAAGCCCTATGTGGTCACTGAAGGCTTTC  699

seq1  CCACAGTCGATGCAATCGAAGGGTTTCTCCCCAGTGTGATAGTACCTCCA  749
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCACAGTCGATGCAATCGAAGGGTTTCTCCCCAGTGTGATAGTACCTCCA  749

seq1  GTGACGAACGAGCAAGGTGTTCTGTATGAAAGCTTTGCCACACTCCGGGC  799
      ||||||||||||| ||||||||||||||||||||||||||||||||||||
seq2  GTGACGAACGAGCGAGGTGTTCTGTATGAAAGCTTTGCCACACTCCGGGC  799

seq1  ACTCGTACGGCTTCTTGCCTATATGGCACCTCTGGTGTCGTGCGAAGGAG  849
      |||||||||||||||||||| |||||||||||||||| ||||||||||||
seq2  ACTCGTACGGCTTCTTGCCTGTATGGCACCTCTGGTGCCGTGCGAAGGAG  849

seq1  GACCCGTCACTGAAGGCC-TTCCCACACTCATTGCATTTATAGGGCTTCT  898
      |||||||||||||||||| |||||||||| ||||||||||||||||||||
seq2  GACCCGTCACTGAAGGCCTTTCCCACACTGATTGCATTTATAGGGCTTCT  899

seq1  -CTCCAGTATGAATTCTCTGGTGAACGGTAAGGGAGGAGCTCTGGGTGAA  947
       |||||||||||||||||||||||||||||  ||| |||||||||||| |
seq2  CCTCCAGTATGAATTCTCTGGTGAACGGTA--GGA-GAGCTCTGGGTG-A  945

seq1  AGTTTTCTTACATTCATTACATTGGAAAAGTTTTTTTCCTGA-ATAGATT  996
      |||||||||||| |||||||||  | |||| ||||||||||| | | | |
seq2  AGTTTTCTTACA-TCATTACAT--GTAAAG-TTTTTTCCTGACAGATAGT  991

seq1  CCGGTTTCCTTTACGACTACTGGATTTGGGGAGAAACTTTTACCTGAGTC  1046
      |         |||| |||||||||||  | | |||||||    |||||||
seq2  C---------TTAC-ACTACTGGATT--GAGGGAAACTT---ACTGAGTC  1026

seq1  ACAGTTATGACT  1058
       ||  |||||||
seq2  -CAAGTATGACT  1037