BAC Information

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BAC

Clone NameB6Ng01-071F15
Chromosome5 (Build37)
Map Location 75,398,345 - 75,542,816
singlet/doubletdoublet
Overlap geneChic2, Gsh2, LOC100039083, Olfr1401-ps1
Upstream geneUsp46, 2700023E23Rik, Rasl11b, Scfd2, Fip1l1, Lnx1, EG619945
Downstream genePdgfra, LOC100039125, LOC100039143, LOC100039158, LOC100039169, Kit, EG664874, Kdr, Gabarapl2-ps5_758.1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-071F15.bB6Ng01-071F15.g
ACCDH889077DH889078
length1,1231,119
definitionDH889077|Mus musculus domesticus DNA, BAC clone: B6Ng01-071F15, 5' end.DH889078|Mus musculus domesticus DNA, BAC clone: B6Ng01-071F15, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(75,398,345 - 75,399,466)(75,541,669 - 75,542,816)
sequence
gaattcccttcttcttcctgctgagctatggcattagctcaccaccatat
ctagtttttccttctagacttttaagtctgttacatcaagagaaaaaact
ggacacgttttactaaactgagaaccaagaagaagcaacccctgctctgt
tctgtcttgctgctgtgtgagactgtctagcctcaaatacagcaactagc
catagcctccagagtgctggtctcccaggcctgcaccaggccctggggga
gggaatcttctgttggagattggttgatactgtttctttacacaacagta
acagagcagaagttagataattcaccaaaaactaaatacttagtgttcag
ttcattaaaatacttgagatacaaagctaagaagaccttatattatttta
caaaaacagaaaaaacagttaactctcaaatgaagagcattgtgtttgaa
aatgcaaagggagaacatagtctgtgtatctcagatgcctacattctaaa
agatcacatataattttctttcaatattatagcggagactttcccaatct
ttaaacacacaaagcattttaagtacacacggggagtaccgcacctctaa
ttttaaaaacacaatttaacaacagtatgctgtcactgttaagtatggcc
aaaccattaccactgaactagacgtctaggtaagtactcacacataaaac
ttaataaaaagaaaaaataagcaacagctgaacaaagataacatcatgag
gtagtcatagcaccatcctgttctggcaaaggaagtgaaaataaagaggc
caaataatttgatgaccttgtagaccatccgaaatgtcctgcaatcaaga
tgggcatcttgctggcatggtcatggctaacgcctataatcctcagctgc
ataaaaggtttcagccaccctggactacatggagcctgtttcaaaacaga
acgcaacacaaacacagcatcagcatcttgaagtctgttttcagtgctat
caggatcacggaaatatcagcctggcacaaacctgtgatctcagtacctg
gtaggctaggaaaggggactgagaaggtgaagctagctcgggttacccag
aaagatgcctgaaaaacagaaca
gaattctatttctaagaagatacaggaagaaccaagaatctttatctcct
gaatattcaagatccagacaatgagatatcatttgaatatgactgaagtc
tgtacttcctacccaggttcagataaagtcccagctggacttatctgtta
gtaactgacaattctatgaaataggaacacgttagctattacataactgg
aaaatgagattgcttctccttcacacctatttttaaatggacatttaagg
gtaaatctgaaaataaaaatgtaaacatatcatttgatcacccactggcc
cacagcagggttttatgagatcttcatcctaaaattactgagttctagct
ttctgactgccacacccaccccctggagggacagaataggttatctatct
ttctaggatagaaagttagatgcctggttccaggaacaaaggttgcatat
ttttctctagtaacctcctttttctcttccccagtaatagtttctggcgg
ttcaggtgtttgtgtgtttcctcctatcttcttttcaaggtctcttccag
ttagatctggtcctgaagaacagttacagccaatagggtgtgttgagagt
gaaattgggtgtcctttaaagtagatggtacactttactcagattttttt
ttttcctgcctgtgaaaaacaaaacaaaacaaaaatgtgactcaaggttt
ccaaatctccatggactgaggccaccttgagaatttgaacagacctctat
ggtacagtaaattagaaggacccttgactgttaaagccccaagcccaccc
agacctaaaatgtggcagacacaaacatcttaagaccctccttctgcgca
cacctttaatcccagcactcgggaggcagaggcaggcagatttctgagtt
cgaggccagcctggtctacaaagtgagttccaggacagctagggctataa
agagaaaccctgtctcaaaaaaaccaaaaacaaaaacaacaaaaacaaac
aaacaaacaacacacatacaacctcctctggagttttctgttgcagcacc
actgatctacgctaagaattactccctgtactcggaaacacctccactca
ttcactcaaaaacaacaaa
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr5_75398345_75399466
seq2: B6Ng01-071F15.b_44_1166

seq1  GAATTCCCTTCTTCTTCCTGCTGAGCTATGGCATTAGCTCACCACCATAT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCCCTTCTTCTTCCTGCTGAGCTATGGCATTAGCTCACCACCATAT  50

seq1  CTAGTTTTTCCTTCTAGACTTTTAAGTCTGTTACATCAAGAGAAAAAACT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTAGTTTTTCCTTCTAGACTTTTAAGTCTGTTACATCAAGAGAAAAAACT  100

seq1  GGACACGTTTTACTAAACTGAGAACCAAGAAGAAGCAACCCCTGCTCTGT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGACACGTTTTACTAAACTGAGAACCAAGAAGAAGCAACCCCTGCTCTGT  150

seq1  TCTGTCTTGCTGCTGTGTGAGACTGTCTAGCCTCAAATACAGCAACTAGC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTGTCTTGCTGCTGTGTGAGACTGTCTAGCCTCAAATACAGCAACTAGC  200

seq1  CATAGCCTCCAGAGTGCTGGTCTCCCAGGCCTGCACCAGGCCCTGGGGGA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATAGCCTCCAGAGTGCTGGTCTCCCAGGCCTGCACCAGGCCCTGGGGGA  250

seq1  GGGAATCTTCTGTTGGAGATTGGTTGATACTGTTTCTTTACACAACAGTA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGAATCTTCTGTTGGAGATTGGTTGATACTGTTTCTTTACACAACAGTA  300

seq1  ACAGAGCAGAAGTTAGATAATTCACCAAAAACTAAATACTTAGTGTTCAG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAGAGCAGAAGTTAGATAATTCACCAAAAACTAAATACTTAGTGTTCAG  350

seq1  TTCATTAAAATACTTGAGATACAAAGCTAAGAAGACCTTATATTATTTTA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCATTAAAATACTTGAGATACAAAGCTAAGAAGACCTTATATTATTTTA  400

seq1  CAAAAACAGAAAAAACAGTTAACTCTCAAATGAAGAGCATTGTGTTTGAA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAAAACAGAAAAAACAGTTAACTCTCAAATGAAGAGCATTGTGTTTGAA  450

seq1  AATGCAAAGGGAGAACATAGTCTGTGTATCTCAGATGCCTACATTCTAAA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATGCAAAGGGAGAACATAGTCTGTGTATCTCAGATGCCTACATTCTAAA  500

seq1  AGATCACATATAATTTTCTTTCAATATTATAGCGGAGACTTTCCCAATCT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGATCACATATAATTTTCTTTCAATATTATAGCGGAGACTTTCCCAATCT  550

seq1  TTAAACACACAAAGCATTTTAAGTACACACGGGGAGTACCGCACCTCTAA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAAACACACAAAGCATTTTAAGTACACACGGGGAGTACCGCACCTCTAA  600

seq1  TTTTAAAAACACAATTTAACAACAGTATGCTGTCACTGTTAAGTATGGCC  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTAAAAACACAATTTAACAACAGTATGCTGTCACTGTTAAGTATGGCC  650

seq1  AAACCATTACCACTGAACTAGACGTCTAGGTAAGTACTCACACATAAAAC  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAACCATTACCACTGAACTAGACGTCTAGGTAAGTACTCACACATAAAAC  700

seq1  TTAATAAAAAGAAAAAATAAGCAACAGCTGAACAAAGATAACATCATGAG  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAATAAAAAGAAAAAATAAGCAACAGCTGAACAAAGATAACATCATGAG  750

seq1  GTAGTCATAGCACCATCCTGTTCTGGCAAAGGAAGTGAAAATAAAGAGGC  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTAGTCATAGCACCATCCTGTTCTGGCAAAGGAAGTGAAAATAAAGAGGC  800

seq1  CAAATAATTTGATGACCTTGTAGACCATCCGAAATGTCCTGCAATCAAGA  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAATAATTTGATGACCTTGTAGACCATCCGAAATGTCCTGCAATCAAGA  850

seq1  TGGGCATCTTGCTGGCATGGTCATGGCTAACGCCTATAATCCTCAGCTGC  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGGCATCTTGCTGGCATGGTCATGGCTAACGCCTATAATCCTCAGCTGC  900

seq1  ATAAAAGGTTTCAGGCCACCCTGGACTACATGGAGCCTGTTTCAAAACAG  950
      ||||||||||||| ||||||||||||||||||||||||||||||||||||
seq2  ATAAAAGGTTTCA-GCCACCCTGGACTACATGGAGCCTGTTTCAAAACAG  949

seq1  AACGCAACACAAACACAGCATCAGCATCTTGAAGTCTGTTTTCAGTGCTA  1000
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACGCAACACAAACACAGCATCAGCATCTTGAAGTCTGTTTTCAGTGCTA  999

seq1  TCAGGATCACGGAAATATCAGCCTGGCACAAACCTGTGATCTCAGTACCT  1050
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAGGATCACGGAAATATCAGCCTGGCACAAACCTGTGATCTCAGTACCT  1049

seq1  GGTAGGCTAGGAAAGGGGACTGAG-AGGTGAAGGCTAGCTCGGGTTACAC  1099
      |||||||||||||||||||||||| ||||||| ||||||||||||||| |
seq2  GGTAGGCTAGGAAAGGGGACTGAGAAGGTGAA-GCTAGCTCGGGTTACCC  1098

seq1  AGAAAGATG-CTG-AGAACAGAACA  1122
      ||||||||| ||| | |||||||||
seq2  AGAAAGATGCCTGAAAAACAGAACA  1123

seq1: chr5_75541669_75542816
seq2: B6Ng01-071F15.g_65_1183 (reverse)

seq1  TTTGT--TTTTTGAGTGAATGAGTGAGGTTGTATCTGGAGTTACAGTGAG  48
      |||||  ||||||||||||||||||  | ||| ||  ||| ||||| |||
seq2  TTTGTTGTTTTTGAGTGAATGAGTGGAGGTGTTTC-CGAG-TACAGGGAG  48

seq1  TAAATGTCTTAGCGGTTAGGATCAAGTGGTGCTGCAACAGAAAACTCCAG  98
      |||   ||||||||  || |||| ||||||||||||||||||||||||||
seq2  TAA--TTCTTAGCG--TA-GATC-AGTGGTGCTGCAACAGAAAACTCCAG  92

seq1  AAGGAGGTTTTGTTATTGTTGTTGTTTTGTTTTTGTTTTTGTTTTTGTTT  148
       ||||||        ||||   ||| |||||| | | |||||||||||  
seq2  -AGGAGG--------TTGTATGTGTGTTGTTTGTTTGTTTGTTTTTGT--  131

seq1  TTTTGTTTGTTTTTTTGTTTTTTTGGTTTTTTTTGAGACAGGGTTTCTCT  198
               | |||||||||||   | |||||||||||||||||||||||
seq2  ---------TGTTTTTGTTTTT---GGTTTTTTTGAGACAGGGTTTCTCT  169

seq1  TTATAGCCCTAGCTGTCCTGGAACTCACTTTGTAGACCAGGCTGGCCTCG  248
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTATAGCCCTAGCTGTCCTGGAACTCACTTTGTAGACCAGGCTGGCCTCG  219

seq1  AACTCAGAAATCTGCCTGCCTCTGCCTCCCGAGTGCTGGGATTAAAGGTG  298
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACTCAGAAATCTGCCTGCCTCTGCCTCCCGAGTGCTGGGATTAAAGGTG  269

seq1  TGCGCAGAAGGAGGGTCTTAAGATGTTTGTGTCTGCCACATTTTAGGTCT  348
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCGCAGAAGGAGGGTCTTAAGATGTTTGTGTCTGCCACATTTTAGGTCT  319

seq1  GGGTGGGCTTGGGGCTTTAACAGTCAAGGGTCCTTCTAATTTACTGTACC  398
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGTGGGCTTGGGGCTTTAACAGTCAAGGGTCCTTCTAATTTACTGTACC  369

seq1  ATAGAGGTCTGTTCAAATTCTCAAGGTGGCCTCAGTCCATGGAGATTTGG  448
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAGAGGTCTGTTCAAATTCTCAAGGTGGCCTCAGTCCATGGAGATTTGG  419

seq1  AAACCTTGAGTCACATTTTTGTTTTGTTTTGTTTTTCACAGGCAGGAAAA  498
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAACCTTGAGTCACATTTTTGTTTTGTTTTGTTTTTCACAGGCAGGAAAA  469

seq1  AAAAAAATCTGAGTAAAGTGTACCATCTACTTTAAAGGACACCCAATTTC  548
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAAAAATCTGAGTAAAGTGTACCATCTACTTTAAAGGACACCCAATTTC  519

seq1  ACTCTCAACACACCCTATTGGCTGTAACTGTTCTTCAGGACCAGATCTAA  598
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTCTCAACACACCCTATTGGCTGTAACTGTTCTTCAGGACCAGATCTAA  569

seq1  CTGGAAGAGACCTTGAAAAGAAGATAGGAGGAAACACACAAACACCTGAA  648
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGGAAGAGACCTTGAAAAGAAGATAGGAGGAAACACACAAACACCTGAA  619

seq1  CCGCCAGAAACTATTACTGGGGAAGAGAAAAAGGAGGTTACTAGAGAAAA  698
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCGCCAGAAACTATTACTGGGGAAGAGAAAAAGGAGGTTACTAGAGAAAA  669

seq1  ATATGCAACCTTTGTTCCTGGAACCAGGCATCTAACTTTCTATCCTAGAA  748
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATATGCAACCTTTGTTCCTGGAACCAGGCATCTAACTTTCTATCCTAGAA  719

seq1  AGATAGATAACCTATTCTGTCCCTCCAGGGGGTGGGTGTGGCAGTCAGAA  798
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGATAGATAACCTATTCTGTCCCTCCAGGGGGTGGGTGTGGCAGTCAGAA  769

seq1  AGCTAGAACTCAGTAATTTTAGGATGAAGATCTCATAAAACCCTGCTGTG  848
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCTAGAACTCAGTAATTTTAGGATGAAGATCTCATAAAACCCTGCTGTG  819

seq1  GGCCAGTGGGTGATCAAATGATATGTTTACATTTTTATTTTCAGATTTAC  898
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCCAGTGGGTGATCAAATGATATGTTTACATTTTTATTTTCAGATTTAC  869

seq1  CCTTAAATGTCCATTTAAAAATAGGTGTGAAGGAGAAGCAATCTCATTTT  948
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTTAAATGTCCATTTAAAAATAGGTGTGAAGGAGAAGCAATCTCATTTT  919

seq1  CCAGTTATGTAATAGCTAACGTGTTCCTATTTCATAGAATTGTCAGTTAC  998
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAGTTATGTAATAGCTAACGTGTTCCTATTTCATAGAATTGTCAGTTAC  969

seq1  TAACAGATAAGTCCAGCTGGGACTTTATCTGAACCTGGGTAGGAAGTACA  1048
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAACAGATAAGTCCAGCTGGGACTTTATCTGAACCTGGGTAGGAAGTACA  1019

seq1  GACTTCAGTCATATTCAAATGATATCTCATTGTCTGGATCTTGAATATTC  1098
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACTTCAGTCATATTCAAATGATATCTCATTGTCTGGATCTTGAATATTC  1069

seq1  AGGAGATAAAGATTCTTGGTTCTTCCTGTATCTTCTTAGAAATAGAATTC  1148
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGAGATAAAGATTCTTGGTTCTTCCTGTATCTTCTTAGAAATAGAATTC  1119