BAC Information

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BAC

Clone NameB6Ng01-071H02
Chromosome5 (Build37)18 (Build37)
Map Location 98,950,365 - 98,951,51756,344,081 - 56,344,313
singlet/doubletsingletsinglet
Overlap gene1700007G11Rik
Upstream geneAntxr2, EG435856, LOC666315, LOC666320, LOC666326, Prdm8, Fgf5
Downstream geneBmp3, Prkg2, LOC100041680, Rasgef1b, A930011G23Rik
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-071H02.bB6Ng01-071H02.g
ACCDH889143DH889144
length1,146981
definitionDH889143|Mus musculus domesticus DNA, BAC clone: B6Ng01-071H02, 5' end.DH889144|Mus musculus domesticus DNA, BAC clone: B6Ng01-071H02, 3' end.
singlet/doubletsingletsinglet
BLAST hituniqueunique
Map location.(98,950,365 - 98,951,517)(56,344,081 - 56,344,313)
sequence
gaattcacagcatatttagtgtttgcaaattttccctacttttacttaac
ccttaatgaactacattattttcttcctcccttgattccttgatcctttc
ttccctctctctctccttccctccatacttccctccctccttcctttttt
ccttccttccttctgtccctcctgttatgtaatcaagtctggcttagaac
tcaaaattttgctccctctgccccccccccctcccaagggctagggttat
aggtgtaattacaccacaccagcctacaacttccttattacctgtagcta
tatatttttatattcacaactattttacatgtatttttttagttttccag
tgataactggcctacctataaatttgaactttcatataccacatactatt
agtttctgtgcttatgttcctaatagaatttgtgtgggaaaacaataatt
taactaagtaattcatgaaaaactctcaaaatgataaaatgaagtgagga
ctaaatcttacagtgtttgggaaaaaaacctgtgctttagtaattctgtc
ttttagtaattctgtccttctgcattcagatcttacatgggcaccatttt
acctatgggacatttctcaaggtgttttaagtgactaaattatgtttatt
agggtctatagctttgaggcagttttattaaggatgctattccagttcct
ctccgtttctcctgctttgttttttatcatattcacaagtttttaaattt
aatgtaggccctaatagaaataaatggccccaaggaagagcagaggaatt
attttattaattacgtttcctgatggtattaccaaatacttaaaggaaac
tcgtagaggaacagacatgtgcttttgctcatggtttcagagggttcggt
ttgtatggcaggaaggctggcagagcagcaccttttacgtggtggaaggc
caggagtcagacatatggagaacgcctgtttcctggctttcccagggaaa
gttgttgtctgcgttctggatgtatttcctgctttagctatcatctctga
gaacattctcaaggatccacccagcactgtgcctcctcagtcactaggca
gtcttagacacagccgccgcagacaggcaaacagctgtcgctgcct
gaattcagagactatatgcacaagtcctatttaagatctagacagccaaa
atttggcaactgaaggctactagagaagagaaggccagttttccttagga
atatggttcaagatgtacactgtatgtgtaccactgacagaccagtagat
gatcctacaataatgtgcacgtcatgtagtctaaaatatgattggaactc
attcagaaatctcaatgtacttatgaggtcaagtcaataaaaactgtaaa
gattttcttgattccttcaaaggttttactaaatcaatgctgtgaagcag
agatcatggccttttttttttaataaaataaatttgagttctgtttcagt
ggtaaagtagtcaccttggtcaatgttctcttgctgtgaatagacatacc
atgaccatggcacctcttacaaaataaagcatttaaattggggcttgttc
caagtttcagtggtggggaacatggcagcacataggtagacatggtgctg
gtaaagttgctgagaattctacatccagattcacaggcaacaagaaaata
cagtgatgttgggcctggttttcctcttgaaaactactcttagatactca
gtttcactaacggggccaaaccttgtaaccttacccaagcagggccactc
cctcctaactaagcattaaaatatattaacctatgagctccattttcatt
caaatcactacagaggtagaaagtaaaataatggatggatcacagggctc
ccaatggaggagctagagaaagtacccaaggagctaaagggatctgcaac
cctataggtggaacaacattatgaactaaccagtaccccggagctcttga
ctctagctgcatatgtatcaaaaaatggcctagtcggccatcactggaaa
gagaggcccattggacacgcaaactttatatgccccagtacaggggaacg
ccagggccaaaaggggagtgggtggggtagg
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr5_98950365_98951517
seq2: B6Ng01-071H02.b_46_1191

seq1  GAATTCACAGCATATTTAGTGTTTGCAAATTTTCCCTACTTTTACTTAAC  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCACAGCATATTTAGTGTTTGCAAATTTTCCCTACTTTTACTTAAC  50

seq1  CCTTAATGAACTACATTATTTTCTTCCTCCCTTGATTCCTTGATCCTTTC  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTTAATGAACTACATTATTTTCTTCCTCCCTTGATTCCTTGATCCTTTC  100

seq1  TTCCCTCTCTCTCTCCTTCCCTCCATACTTCCCTCCCTCCTTCCTTTTTT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCCCTCTCTCTCTCCTTCCCTCCATACTTCCCTCCCTCCTTCCTTTTTT  150

seq1  CCTTCCTTCCTTCTGTCCCTCCTGTTATGTAATCAAGTCTGGCTTAGAAC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTTCCTTCCTTCTGTCCCTCCTGTTATGTAATCAAGTCTGGCTTAGAAC  200

seq1  TCAAAATTTTGCTCCCTCTGCCCCCCCCCCCTCCCAAGGGCTAGGGTTAT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAAAATTTTGCTCCCTCTGCCCCCCCCCCCTCCCAAGGGCTAGGGTTAT  250

seq1  AGGTGTAATTACACCACACCAGCCTACAACTTCCTTATTACCTGTAGCTA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGTGTAATTACACCACACCAGCCTACAACTTCCTTATTACCTGTAGCTA  300

seq1  TATATTTTTATATTCACAACTATTTTACATGTATTTTTTTAGTTTTCCAG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATATTTTTATATTCACAACTATTTTACATGTATTTTTTTAGTTTTCCAG  350

seq1  TGATAACTGGCCTACCTATAAATTTGAACTTTCATATACCACATACTATT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGATAACTGGCCTACCTATAAATTTGAACTTTCATATACCACATACTATT  400

seq1  AGTTTCTGTGCTTATGTTCCTAATAGAATTTGTGTGGGAAAACAATAATT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTTTCTGTGCTTATGTTCCTAATAGAATTTGTGTGGGAAAACAATAATT  450

seq1  TAACTAAGTAATTCATGAAAAACTCTCAAAATGATAAAATGAAGTGAGGA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAACTAAGTAATTCATGAAAAACTCTCAAAATGATAAAATGAAGTGAGGA  500

seq1  CTAAATCTTACAGTGTTTGGGAAAAAAACCTGTGCTTTAGTAATTCTGTC  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTAAATCTTACAGTGTTTGGGAAAAAAACCTGTGCTTTAGTAATTCTGTC  550

seq1  TTTTAGTAATTCTGTCCTTCTGCATTCAGATCTTACATGGGCACCATTTT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTAGTAATTCTGTCCTTCTGCATTCAGATCTTACATGGGCACCATTTT  600

seq1  ACCTATGGGACATTTCTCAAGGTGTTTTAAGTGACTAAATTATGTTTATT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCTATGGGACATTTCTCAAGGTGTTTTAAGTGACTAAATTATGTTTATT  650

seq1  AGGGTCTATAGCTTTGAGGCAGTTTTATTAAGGATGCTATTCCAGTTCCT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGGTCTATAGCTTTGAGGCAGTTTTATTAAGGATGCTATTCCAGTTCCT  700

seq1  CTCCGTTTCTCCTGCTTTGTTTTTTATCATATTCACAAGTTTTTAAATTT  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCCGTTTCTCCTGCTTTGTTTTTTATCATATTCACAAGTTTTTAAATTT  750

seq1  AATGTAGGCCCTAATAGAAATAAATGGCCCCAAGGAAGAGCAGAGGAATT  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATGTAGGCCCTAATAGAAATAAATGGCCCCAAGGAAGAGCAGAGGAATT  800

seq1  ATTTTATTAATTACGTTTCCTGATGGTATTACCAAATACTTAAAGGAAAC  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTTATTAATTACGTTTCCTGATGGTATTACCAAATACTTAAAGGAAAC  850

seq1  TCGTAGAGGAACAGACATGTGCTTTTGCTCATGGTTTCAGAGGGTTCGGT  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCGTAGAGGAACAGACATGTGCTTTTGCTCATGGTTTCAGAGGGTTCGGT  900

seq1  TTGTATGGCAGGGAAGGCTGGCAGAGCAGCACCTTTTACGTGGTGGAAGG  950
      |||||||||| |||||||||||||||||||||||||||||||||||||||
seq2  TTGTATGGCA-GGAAGGCTGGCAGAGCAGCACCTTTTACGTGGTGGAAGG  949

seq1  CCAGGAGTCAGACATATGGAGAACGCCTGTTTTCCTGGCTTTCCCCAGGG  1000
      ||||||||||||||||||||||||||||| |||||||||||| |||||||
seq2  CCAGGAGTCAGACATATGGAGAACGCCTG-TTTCCTGGCTTT-CCCAGGG  997

seq1  AAAGTTGTTGTCTGCGTTCTGGATGTATTTCCTGCTTTAGCTAATCATCT  1050
      |||||||||||||||||||||||||||||||||||||||||| |||||||
seq2  AAAGTTGTTGTCTGCGTTCTGGATGTATTTCCTGCTTTAGCT-ATCATCT  1046

seq1  CTGAGAACATTCTCAAGGATCCACCCAGCACTGTGCCTCCTCAGTCACTA  1100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGAGAACATTCTCAAGGATCCACCCAGCACTGTGCCTCCTCAGTCACTA  1096

seq1  GGCAGTCTTAGACACAGCCG-CGCAGACAGTGCAGAGCAGCTGTCGGCCT  1149
      |||||||||||||||||||| ||||||||| ||| | |||||||||  ||
seq2  GGCAGTCTTAGACACAGCCGCCGCAGACAG-GCA-AACAGCTGTCG--CT  1142

seq1  GCCT  1153
      ||||
seq2  GCCT  1146

seq1: chr18_56344081_56344313
seq2: B6Ng01-071H02.g_812_1043 (reverse)

seq1  CCTA-CCCACCCACTCCCCCTATTTGGCCCTGGCGTTCCCCTGTACTGGG  49
      |||| ||||||||||||||   ||||||||||||||||||||||||||||
seq2  CCTACCCCACCCACTCCCC--TTTTGGCCCTGGCGTTCCCCTGTACTGGG  48

seq1  GCATATAAAGTTTGCAAGTCCAATGGGCCTCTCTTTGCAGTGATGGCTGA  99
      |||||||||||||||  ||||||||||||||||||| |||||||||| ||
seq2  GCATATAAAGTTTGCGTGTCCAATGGGCCTCTCTTTCCAGTGATGGCCGA  98

seq1  CTAAGCCATCTTTTGATACATATGCAGCTAGAGACAAGAGCTCCGGGGTA  149
      ||| ||||| ||||||||||||||||||||||| ||||||||||||||||
seq2  CTAGGCCATTTTTTGATACATATGCAGCTAGAGTCAAGAGCTCCGGGGTA  148

seq1  CTGGTTAGTTCATATTGTTGTTCCACCTATAGGGTTGCAGTTCCCTTTAG  199
      |||||||||||||| ||||||||||||||||||||||||| |||||||||
seq2  CTGGTTAGTTCATAATGTTGTTCCACCTATAGGGTTGCAGATCCCTTTAG  198

seq1  CTCCTTGGGTAATTTCTCTAGCTCCTCCATTGGG  233
      ||||||||||| ||||||||||||||||||||||
seq2  CTCCTTGGGTACTTTCTCTAGCTCCTCCATTGGG  232