BAC Information

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BAC

Clone NameB6Ng01-071H11
Chromosome5 (Build37)
Map Location 69,436,350 - 69,589,342
singlet/doubletdoublet
Overlap geneKctd8
Upstream geneAY616753, LOC666996
Downstream geneLOC545756, Yipf7, Guf1, Gnpda2
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-071H11.bB6Ng01-071H11.g
ACCDH889160DH889161
length1,1451,007
definitionDH889160|Mus musculus domesticus DNA, BAC clone: B6Ng01-071H11, 5' end.DH889161|Mus musculus domesticus DNA, BAC clone: B6Ng01-071H11, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(69,588,166 - 69,589,342)(69,436,350 - 69,436,991)
sequence
gaattctggcaacatattctgaattacgtcctgagagtacagtcaaatgg
gtctcataatacagtcttggttatgcttgctgcataggaacaatccccta
cacagaaaggatattaccattgtcaggatgtcagtgtagaacaggagcct
tctctggagcactacagctttctactgagaccataggtacagatgttcct
ggtatttgaagcagtggctgatagttgcaatcctgcttacaattatgcat
ttctacttcttgtcttgatgacacattatctcatgttcttttttttttaa
attatgttgactgaggattcatttgcaccatcatcagtcctaataattca
tgcaactagttttccagaatgagaactcccctgtctagcttttcctaatt
cacttaattttttttcttccttattttttctagttttattttccttattc
aaatatccaagtaatgttagctggactagatatcagccctatagtcagtg
aaaatgtactatttctatatataggtttaaaagggttaaataaatgccaa
ataattaaggaatgatcaattttaggtcccaaatattactgtctattgac
agaggcaactccattgagtactggctagatgacaacacaatgccagcatc
ctcctacattgttttgtcggaataacatttgtgaaaagtaaaataactcc
atttcctagtctgccaagatttgaaaaaaaaaaagtgttttaatgtaata
aaaaagtatatattttttaacttactgttatgtctaaaatgtggcaaaat
aaagccaatcaaggtataaaaccatgaaaaaatattttatgtttcttatt
gccgcattggcagtaaaatttagaatagtcacgggtggagtaaaagaatt
acttaaccttctagaaacaagcagcctccagccctagatgatgctttata
tggtaatttaacttatgtctatgtcatatacatatactgcatatctactt
ctctcagatttgtacaatcacatcaaaatctcactttgaaattggaagaa
accatagaatattctatatcatatgtgagctcccagtagaagagcagtct
ggctggtctgaataattgtgctcatgccttaggataaatacatgc
gaattcaaaggaacactcagggagtctaattaaatttggataagcagaga
gctgagcaactgtcagcagatatggagacttggaagcctcaccaagatgt
ctaattatgagatgaatacagaaggactcaactcccaaggtttcctccaa
taatttagattcctatgcacatagccaaacaccagactgaacatggagag
tgcagtggaggatttagggcaaggactgaaggagctgaaggggtttgcaa
ccccataggaagaaaaacagtatccaacaaccagaccccccctcccaaag
gtcccaaggactaaaacaccaaccacagagtgcacatgtcttacacgcat
tcacgaccggccaggaaagacgcagcaaaccagaatcttctgcggcaaaa
ctttattgcttacatcttcaggagcaagagtgtaaacccccccaaaagca
aaagcgaaaccccgtccctattaaggagagttatccttcgcctaggacgt
atcactccctgattggctgcagtccatggccgagttgtcgtcacggggaa
ggcagagcacatggggtggagaactacccttggcacatgcgcagattatt
tgtttaccacttagaacacagctgtcagcgccatcttgtaacggcgaatg
tgggggcggcttcccacagttcccccttttctattaataagagcaatagg
ccacccatattaatgagagtggagatagaggtcaaatccccagtgtgcag
gtaaaggagccgtacacataacctcctcccaggctcatcacctagagggg
tcctggtctggtcccgtgttgtttttcctggaggaaggacacttgaacac
tcaaccttcttgaaagatgacatgtctccctagaataggctcatatatgc
cgcagagcccttctactgcagtgcttagccgtgcaactctctcgggctgc
tgaagcacactcactctatcccgtgcaatgagactagcctcgtgtgtgca
agagctg
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr5_69588166_69589342
seq2: B6Ng01-071H11.b_45_1189 (reverse)

seq1  GCATGATTATTTATCACTAAGAGCATGAGCACACAAGTGAATTTCAGGAA  50
      |||||  |||||||| ||||| |||||||  ||||| |    |||||  |
seq2  GCATG--TATTTATC-CTAAG-GCATGAG--CACAATT---ATTCAG--A  39

seq1  CACAGCCCAGAACTGCTCTTCCTACTGTGAGCTCAACAATTATGATATAG  100
      | ||| |||| ||||||||| |||||| |||||| |||  ||||||||||
seq2  C-CAG-CCAG-ACTGCTCTT-CTACTGGGAGCTC-ACA--TATGATATAG  82

seq1  AATATTCTATGGTGTCTTTCCAATTTCAAAGTGAGATTTTTTGATGTGAT  150
      ||||||||||||| || |||||||||||||||||||  ||||||||||| 
seq2  AATATTCTATGGTTTC-TTCCAATTTCAAAGTGAGA--TTTTGATGTGA-  128

seq1  TTGTACAAAATCTTGAGAGAAGTAGAATATGCAGTATTATGTATTATGAC  200
      |||||| ||||| |||||||||||| |||||||||| |||||| ||||||
seq2  TTGTAC-AAATC-TGAGAGAAGTAG-ATATGCAGTA-TATGTA-TATGAC  173

seq1  ATTAGACATAAGTTAAATTACCATAATAAAGCATCATCTTAGGGCTGGAG  250
      | |||||||||||||||||||||| ||||||||||||| |||||||||||
seq2  A-TAGACATAAGTTAAATTACCAT-ATAAAGCATCATC-TAGGGCTGGAG  220

seq1  GCTGCTTGTTTTCTAGAAGGTTAAGTAATTCTTTTTACTCCACCCGTGAC  300
      |||||||| |||||||||||||||||||||| ||||||||||||||||||
seq2  GCTGCTTG-TTTCTAGAAGGTTAAGTAATTC-TTTTACTCCACCCGTGAC  268

seq1  TATTCTAAATTTTACTGCCAATGCGGCAATAAGAAACATAAAATATTTTT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATTCTAAATTTTACTGCCAATGCGGCAATAAGAAACATAAAATATTTTT  318

seq1  TCATGGTTTTATACCTTGATTGGCTTTATTTTGCCACATTTTAGACATAA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCATGGTTTTATACCTTGATTGGCTTTATTTTGCCACATTTTAGACATAA  368

seq1  CAGTAAGTTAAAAAATATATACTTTTTTATTACATTAAAACACTTTTTTT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGTAAGTTAAAAAATATATACTTTTTTATTACATTAAAACACTTTTTTT  418

seq1  TTTTCAAATCTTGGCAGACTAGGAAATGGAGTTATTTTACTTTTCACAAA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTCAAATCTTGGCAGACTAGGAAATGGAGTTATTTTACTTTTCACAAA  468

seq1  TGTTATTCCGACAAAACAATGTAGGAGGATGCTGGCATTGTGTTGTCATC  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTTATTCCGACAAAACAATGTAGGAGGATGCTGGCATTGTGTTGTCATC  518

seq1  TAGCCAGTACTCAATGGAGTTGCCTCTGTCAATAGACAGTAATATTTGGG  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGCCAGTACTCAATGGAGTTGCCTCTGTCAATAGACAGTAATATTTGGG  568

seq1  ACCTAAAATTGATCATTCCTTAATTATTTGGCATTTATTTAACCCTTTTA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCTAAAATTGATCATTCCTTAATTATTTGGCATTTATTTAACCCTTTTA  618

seq1  AACCTATATATAGAAATAGTACATTTTCACTGACTATAGGGCTGATATCT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACCTATATATAGAAATAGTACATTTTCACTGACTATAGGGCTGATATCT  668

seq1  AGTCCAGCTAACATTACTTGGATATTTGAATAAGGAAAATAAAACTAGAA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTCCAGCTAACATTACTTGGATATTTGAATAAGGAAAATAAAACTAGAA  718

seq1  AAAATAAGGAAGAAAAAAAATTAAGTGAATTAGGAAAAGCTAGACAGGGG  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAATAAGGAAGAAAAAAAATTAAGTGAATTAGGAAAAGCTAGACAGGGG  768

seq1  AGTTCTCATTCTGGAAAACTAGTTGCATGAATTATTAGGACTGATGATGG  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTTCTCATTCTGGAAAACTAGTTGCATGAATTATTAGGACTGATGATGG  818

seq1  TGCAAATGAATCCTCAGTCAACATAATTTAAAAAAAAAAGAACATGAGAT  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCAAATGAATCCTCAGTCAACATAATTTAAAAAAAAAAGAACATGAGAT  868

seq1  AATGTGTCATCAAGACAAGAAGTAGAAATGCATAATTGTAAGCAGGATTG  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATGTGTCATCAAGACAAGAAGTAGAAATGCATAATTGTAAGCAGGATTG  918

seq1  CAACTATCAGCCACTGCTTCAAATACCAGGAACATCTGTACCTATGGTCT  1000
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAACTATCAGCCACTGCTTCAAATACCAGGAACATCTGTACCTATGGTCT  968

seq1  CAGTAGAAAGCTGTAGTGCTCCAGAGAAGGCTCCTGTTCTACACTGACAT  1050
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGTAGAAAGCTGTAGTGCTCCAGAGAAGGCTCCTGTTCTACACTGACAT  1018

seq1  CCTGACAATGGTAATATCCTTTCTGTGTAGGGGATTGTTCCTATGCAGCA  1100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTGACAATGGTAATATCCTTTCTGTGTAGGGGATTGTTCCTATGCAGCA  1068

seq1  AGCATAACCAAGACTGTATTATGAGACCCATTTGACTGTACTCTCAGGAC  1150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCATAACCAAGACTGTATTATGAGACCCATTTGACTGTACTCTCAGGAC  1118

seq1  GTAATTCAGAATATGTTGCCAGAATTC  1177
      |||||||||||||||||||||||||||
seq2  GTAATTCAGAATATGTTGCCAGAATTC  1145

seq1: chr5_69436350_69436991
seq2: B6Ng01-071H11.g_64_705

seq1  GAATTCAAAGGAACACTCAGGGAGTCTAATTAAATTTGGATAAGCAGAGA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCAAAGGAACACTCAGGGAGTCTAATTAAATTTGGATAAGCAGAGA  50

seq1  GCTGAGCAACTGTCAGCAGATATGGAGACTTGGAAGCCTCACCAAGATGT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTGAGCAACTGTCAGCAGATATGGAGACTTGGAAGCCTCACCAAGATGT  100

seq1  CTAATTATGAGATGAATACAGAAGGACTCAACTCCCAAGGTTTCCTCCAA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTAATTATGAGATGAATACAGAAGGACTCAACTCCCAAGGTTTCCTCCAA  150

seq1  TAATTTAGATTCCTATGCACATAGCCAAACACCAGACTGAACATGGAGAG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAATTTAGATTCCTATGCACATAGCCAAACACCAGACTGAACATGGAGAG  200

seq1  TGCAGTGGAGGATTTAGGGCAAGGACTGAAGGAGCTGAAGGGGTTTGCAA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCAGTGGAGGATTTAGGGCAAGGACTGAAGGAGCTGAAGGGGTTTGCAA  250

seq1  CCCCATAGGAAGAAAAACAGTATCCAACAACCAGACCCCCCCTCCCAAAG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCCATAGGAAGAAAAACAGTATCCAACAACCAGACCCCCCCTCCCAAAG  300

seq1  GTCCCAAGGACTAAAACACCAACCACAGAGTGCACATGTCTTACACGCAT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCCCAAGGACTAAAACACCAACCACAGAGTGCACATGTCTTACACGCAT  350

seq1  TCACGACCGGCCAGGAAAGACGCAGCAAACCAGAATCTTCTGCGGCAAAA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCACGACCGGCCAGGAAAGACGCAGCAAACCAGAATCTTCTGCGGCAAAA  400

seq1  CTTTATTGCTTACATCTTCAGGAGCAAGAGTGTAAACCCCCCCAAAAGCA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTTATTGCTTACATCTTCAGGAGCAAGAGTGTAAACCCCCCCAAAAGCA  450

seq1  AAAGCGAAACCCCGTCCCTATTAAGGAGAGTTATCCTTCGCCTAGGACGT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAGCGAAACCCCGTCCCTATTAAGGAGAGTTATCCTTCGCCTAGGACGT  500

seq1  ATCACTCCCTGATTGGCTGCAGTCCATGGCCGAGTTGTCGTCACGGGGAA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCACTCCCTGATTGGCTGCAGTCCATGGCCGAGTTGTCGTCACGGGGAA  550

seq1  GGCAGAGCACATGGGGTGGAGAACTACCCTTGGCACATGCGCAGATTATT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCAGAGCACATGGGGTGGAGAACTACCCTTGGCACATGCGCAGATTATT  600

seq1  TGTTTACCACTTAGAACACAGCTGTCAGCGCCATCTTGTAAC  642
      ||||||||||||||||||||||||||||||||||||||||||
seq2  TGTTTACCACTTAGAACACAGCTGTCAGCGCCATCTTGTAAC  642