BAC Information

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BAC

Clone NameB6Ng01-071I01
Chromosome5 (Build37)
Map Location 65,038,460 - 65,196,119
singlet/doubletdoublet
Overlap geneKlf3
Upstream gene3110047P20Rik, LOC100042133, 0610040J01Rik, AA536743, LOC100041636, LOC100041646, Pgm1, Tbc1d1, Ppia-ps22, LOC433894, LOC100042198
Downstream geneTlr1, Tlr6, 9130005N14Rik, Tmem156, Klhl5, Wdr19, Rfc1, Klb, Rpl9, Lias, Ugdh, 1110003E01Rik, 4930589O11Rik, Hip2, 9030416H16Rik, 1700022K14Rik, LOC384261, B3bp
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-071I01.bB6Ng01-071I01.g
ACCDH889187DH889188
length725647
definitionDH889187|Mus musculus domesticus DNA, BAC clone: B6Ng01-071I01, 5' end.DH889188|Mus musculus domesticus DNA, BAC clone: B6Ng01-071I01, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(65,195,395 - 65,196,119)(65,038,460 - 65,039,095)
sequence
gaattcagaataccaattcatacttcccccccaacaccactcttgagaat
aaagtatctccaacaatattagaggaaaaaaaatataagttcttagaacc
aaatctcatgactccgtgtaaaataaaatctcaatgactctgtgtaaagt
gtttattttgaagaatacaaggtaaacattatccagtgtccatttaacct
gaattattcaaaggctcattcatattcaattagtattattgtaaaatact
actattgtaagtactgcagtaaaaatttacagaagtgtttctgttatccg
ccaaagacatggatatgacaattccaactcttatttgccacctccaagct
atccaaaggttctggtccacaccactgtcctgtggtccctacagggctcc
ggttccctaacaccgaaggcgctctgcactgctagccacgctgcaatcct
ttgcttcaggcactgcggcaggttctctccaagtccccaaaggcagtctc
tccaaacctcggtggttcttttcctcccccctgccttcccccacaagcca
aatgacccagcagttagcgcgctccgggtacggaaaaggggatgcttctt
cagtcccaatcgcccccaagtttctcgccaggggcgctggaggctgggct
ccaagtttgctgggcggcagctggggggcgcgggcggggggcgggagccc
cgagtccaggcgggagggggaggag
gaattcttaatcccagatcccctcctgtctgccacccaagcctttcccaa
accgattcgtcctaaagtcagggttccgatgctcagaagaggcaaactca
ggcaaacccggctcgtcagaaaacagccatgcctgctacaaaaatctgtt
gcccccaaactcgctagtgcatttcattacctttcaacgatcggtttaga
attattcacctcgctgcccttaactatccacttgactgccttcatcatta
gcatggagggcggaaccgaggctggcctgtattctcttcagagccccagt
cacttctgattagtgaattgcttagaaaatgtcctgagctctagccggcc
actgccagttagtgtcctgtcccggagaagcgctcatttgtattctgtct
gtgggtcagagtggaggccacgggttagtgaggtggggggtagggcagcg
agggccagccagcctaatggttgcatctgccgtctaccttctagctcctc
cctctctctctccctccctccctccctccctccccctcctcccctttctt
ctcctctcagtctcgctcagctttctattcaacaacagcgaacaaagtaa
aataatataaaaataaaaccggagtgggggtgggggacttcgggaag
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr5_65195395_65196119
seq2: B6Ng01-071I01.b_43_767 (reverse)

seq1  CTCCTCCCCCTCCCGCCTGGACTCGGGGCTCCCGCCCCCCGCCCGCGCCC  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCCTCCCCCTCCCGCCTGGACTCGGGGCTCCCGCCCCCCGCCCGCGCCC  50

seq1  CCCAGCTGCCGCCCAGCAAACTTGGAGCCCAGCCTCCAGCGCCCCTGGCG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCAGCTGCCGCCCAGCAAACTTGGAGCCCAGCCTCCAGCGCCCCTGGCG  100

seq1  AGAAACTTGGGGGCGATTGGGACTGAAGAAGCATCCCCTTTTCCGTACCC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAAACTTGGGGGCGATTGGGACTGAAGAAGCATCCCCTTTTCCGTACCC  150

seq1  GGAGCGCGCTAACTGCTGGGTCATTTGGCTTGTGGGGGAAGGCAGGGGGG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAGCGCGCTAACTGCTGGGTCATTTGGCTTGTGGGGGAAGGCAGGGGGG  200

seq1  AGGAAAAGAACCACCGAGGTTTGGAGAGACTGCCTTTGGGGACTTGGAGA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGAAAAGAACCACCGAGGTTTGGAGAGACTGCCTTTGGGGACTTGGAGA  250

seq1  GAACCTGCCGCAGTGCCTGAAGCAAAGGATTGCAGCGTGGCTAGCAGTGC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAACCTGCCGCAGTGCCTGAAGCAAAGGATTGCAGCGTGGCTAGCAGTGC  300

seq1  AGAGCGCCTTCGGTGTTAGGGAACCGGAGCCCTGTAGGGACCACAGGACA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAGCGCCTTCGGTGTTAGGGAACCGGAGCCCTGTAGGGACCACAGGACA  350

seq1  GTGGTGTGGACCAGAACCTTTGGATAGCTTGGAGGTGGCAAATAAGAGTT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGGTGTGGACCAGAACCTTTGGATAGCTTGGAGGTGGCAAATAAGAGTT  400

seq1  GGAATTGTCATATCCATGTCTTTGGCGGATAACAGAAACACTTCTGTAAA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAATTGTCATATCCATGTCTTTGGCGGATAACAGAAACACTTCTGTAAA  450

seq1  TTTTTACTGCAGTACTTACAATAGTAGTATTTTACAATAATACTAATTGA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTTACTGCAGTACTTACAATAGTAGTATTTTACAATAATACTAATTGA  500

seq1  ATATGAATGAGCCTTTGAATAATTCAGGTTAAATGGACACTGGATAATGT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATATGAATGAGCCTTTGAATAATTCAGGTTAAATGGACACTGGATAATGT  550

seq1  TTACCTTGTATTCTTCAAAATAAACACTTTACACAGAGTCATTGAGATTT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTACCTTGTATTCTTCAAAATAAACACTTTACACAGAGTCATTGAGATTT  600

seq1  TATTTTACACGGAGTCATGAGATTTGGTTCTAAGAACTTATATTTTTTTT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATTTTACACGGAGTCATGAGATTTGGTTCTAAGAACTTATATTTTTTTT  650

seq1  CCTCTAATATTGTTGGAGATACTTTATTCTCAAGAGTGGTGTTGGGGGGG  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTCTAATATTGTTGGAGATACTTTATTCTCAAGAGTGGTGTTGGGGGGG  700

seq1  AAGTATGAATTGGTATTCTGAATTC  725
      |||||||||||||||||||||||||
seq2  AAGTATGAATTGGTATTCTGAATTC  725

seq1: chr5_65038460_65039095
seq2: B6Ng01-071I01.g_66_701

seq1  GAATTCTTAATCCCAGATCCCCTCCTGTCTGCCACCCAAGCCTTTCCCAA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTTAATCCCAGATCCCCTCCTGTCTGCCACCCAAGCCTTTCCCAA  50

seq1  ACCGATTCGTCCTAAAGTCAGGGTTCCGATGCTCAGAAGAGGCAAACTCA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCGATTCGTCCTAAAGTCAGGGTTCCGATGCTCAGAAGAGGCAAACTCA  100

seq1  GGCAAACCCGGCTCGTCAGAAAACAGCCATGCCTGCTACAAAAATCTGTT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCAAACCCGGCTCGTCAGAAAACAGCCATGCCTGCTACAAAAATCTGTT  150

seq1  GCCCCCAAACTCGCTAGTGCATTTCATTACCTTTCAACGATCGGTTTAGA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCCCCAAACTCGCTAGTGCATTTCATTACCTTTCAACGATCGGTTTAGA  200

seq1  ATTATTCACCTCGCTGCCCTTAACTATCCACTTGACTGCCTTCATCATTA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTATTCACCTCGCTGCCCTTAACTATCCACTTGACTGCCTTCATCATTA  250

seq1  GCATGGAGGGCGGAACCGAGGCTGGCCTGTATTCTCTTCAGAGCCCCAGT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCATGGAGGGCGGAACCGAGGCTGGCCTGTATTCTCTTCAGAGCCCCAGT  300

seq1  CACTTCTGATTAGTGAATTGCTTAGAAAATGTCCTGAGCTCTAGCCGGCC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACTTCTGATTAGTGAATTGCTTAGAAAATGTCCTGAGCTCTAGCCGGCC  350

seq1  ACTGCCAGTTAGTGTCCTGTCCCGGAGAAGCGCTCATTTGTATTCTGTCT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTGCCAGTTAGTGTCCTGTCCCGGAGAAGCGCTCATTTGTATTCTGTCT  400

seq1  GTGGGTCAGAGTGGAGGCCACGGGTTAGTGAGGTGGGGGGTAGGGCAGCG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGGGTCAGAGTGGAGGCCACGGGTTAGTGAGGTGGGGGGTAGGGCAGCG  450

seq1  AGGGCCAGCCAGCCTAATGGTTGCATCTGCCGTCTACCTTCTAGCTCCTC  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGGCCAGCCAGCCTAATGGTTGCATCTGCCGTCTACCTTCTAGCTCCTC  500

seq1  CCTCTCTCTCTCCCTCCCTCCCTCCCTCCCTCCCCCTCCTCCCCTTTCTT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTCTCTCTCTCCCTCCCTCCCTCCCTCCCTCCCCCTCCTCCCCTTTCTT  550

seq1  CTCCTCTCAGTCTCGCTCAGCTTTCTATTCAACAACAGCGAACAAAGTAA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCCTCTCAGTCTCGCTCAGCTTTCTATTCAACAACAGCGAACAAAGTAA  600

seq1  AATAATATAAAAATAAAACCGGAGTGGGGGTGGGGG  636
      ||||||||||||||||||||||||||||||||||||
seq2  AATAATATAAAAATAAAACCGGAGTGGGGGTGGGGG  636