BAC Information

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BAC

Clone NameB6Ng01-072A16
Chromosome5 (Build37)
Map Location 47,865,395 - 48,028,116
singlet/doubletdoublet
Overlap genenone
Upstream genenone
Downstream geneLOC100040865, LOC100040876, Slit2, 4933428G09Rik, Kcnip4
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-072A16.bB6Ng01-072A16.g
ACCDH889572DH889573
length1,1961,189
definitionDH889572|Mus musculus domesticus DNA, BAC clone: B6Ng01-072A16, 5' end.DH889573|Mus musculus domesticus DNA, BAC clone: B6Ng01-072A16, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(47,865,395 - 47,866,596)(48,026,912 - 48,028,116)
sequence
gaattctatgaaattcaatcacctcctttatagccttttgcaaataatac
ctgaattaaaatatcgaattctctgattaaaattgctcatctcagtaact
catcagtaatgacattatacagagtaagccttcactgccatttctaaaca
aaacaaaattaaagggagacagctcaaaggcaacatctttttctaacatt
tcctgggccaaagactaaagattttctctcctgcgagtgattgaatctcg
tttacccagtggaagggactaacagcaatcattttgtttccctcagttga
agctattagctgtaattgcttttgttaataatactttacttattataatc
aaagctcatttttttccacttataccccagggccagttttcagatgcaat
ttataaatagatgaaaaacaattaataacaacaagaaaaaccattaatga
tcttaccaacagcacactatgcagtctccaaattctatattttagactat
attttagactataaagactatattactggaagctagaaacttagaagtca
aggcttcagcatatatatatatatatatatatatatatatatatatacac
acatatatacgtatatacgtatgtacatgtatattcatacacacacatat
atatacatatacatatttatttctagcatgcatgtggatgctctcttatt
taaaaagagacgatagacagaggggaagacaggctagatcttattttctt
aaaagccttttatcatgttattaaaaacctcatttataagtactgacatt
ttctatgttaagaattcaatatataaattttgtaggaatacatacaatct
ttagcaaactacagaataaaaacaattgtgagaataatcataatctttca
aggatgtaaagtgagaagagtaaataagcatagatacactgataacattt
attctcaactatgggtcttgatctcaagtctttgcttattatttcccttt
atatcatgaggaagacagagatgagtgattcccactgaaacagtgtactc
acctccttcccagtttcctcaacattgacatttcacagctttctattagg
catccaagaacaatctcactcaaacatctggcagtcacatcttcacttga
atgtaggcctaaactggctctgctattgatataggttaaaggagtg
gaattctttggaattgaggtacatctatctagattttcccagaaatagtt
cctcagaattctaattgagatcattttaaacatttctttgagctctgaaa
taaatctgagcaagcaagaatgtgatgcctaagaagcagaaatgtggatt
ctggggaatctgcttaagggagagacaggctctttgcaaatattctgtac
acgggagaaagtaagcatgcctgcatacagtaagtgagaggacagaagcg
gttgtctacactctaaagcccatttctgtccttgtactttaaactttcta
caacactagtggggtaaacaaatcccaagaatcccctttacagagcatac
atgttgctttgataaatgaggtagagaggtcttcacgtgaagtgcaaggc
atcaatggagtcctcagcaagcaagattgaactgacaggaaagagaaaag
gggcaggagcctgatagttttgtgagctgaaattaaagttattttggaac
ttatacatacatagtttataccaattgttcctcttgcttcccaactccca
gaaacccaacccactggggttttctcctttttctttctaagactcctaag
catggatttgtgacttatttggctctgtgttctttttctaagtttctaaa
tattcatttaatatcatattacatggatagcaatgatcatagcagaacag
cccatgggatgacatgatgcctaaaagccattacatgtggatttgcccag
tgaacacttggaaatgcgagcattttattgaagaaattgaatttttgttt
tcatttaatgtgggaaaataaaagttatatattattgacatttctttgaa
atttaaatgcaaaaaccatttggcagaatcaaaatgcatttcactccaaa
gtcaggtttgcgttcatgttgttgattcaaatggatccctggcatggatg
atgataaaacttcaaatgcatacgtatgttttagagggaacagaatttct
gtagaattccaaacagcaggaaattctcaatctatcccttccagttgtga
tagaagttactctgcaacttctccgcctctttgcctttgtttcttggaag
ctaacgaaagtcatcaaggattgccaagcctctggccttctggagaaact
tggcctcagttttgttcaatagagtgagaataataagag
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr5_47865395_47866596
seq2: B6Ng01-072A16.b_45_1240

seq1  GAATTCTATGAAATTCAATCACCTCCTTTATAGCCTTTTGCAAATAATAC  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTATGAAATTCAATCACCTCCTTTATAGCCTTTTGCAAATAATAC  50

seq1  CTGAATTAAAATATCGAATTCTCTGATTAAAATTGCTCATCTCAGTAACT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGAATTAAAATATCGAATTCTCTGATTAAAATTGCTCATCTCAGTAACT  100

seq1  CATCAGTAATGACATTATACAGAGTAAGCCTTCACTGCCATTTCTAAACA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATCAGTAATGACATTATACAGAGTAAGCCTTCACTGCCATTTCTAAACA  150

seq1  AAACAAAATTAAAGGGAGACAGCTCAAAGGCAACATCTTTTTCTAACATT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAACAAAATTAAAGGGAGACAGCTCAAAGGCAACATCTTTTTCTAACATT  200

seq1  TCCTGGGCCAAAGACTAAAGATTTTCTCTCCTGCGAGTGATTGAATCTCG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCTGGGCCAAAGACTAAAGATTTTCTCTCCTGCGAGTGATTGAATCTCG  250

seq1  TTTACCCAGTGGAAGGGACTAACAGCAATCATTTTGTTTCCCTCAGTTGA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTACCCAGTGGAAGGGACTAACAGCAATCATTTTGTTTCCCTCAGTTGA  300

seq1  AGCTATTAGCTGTAATTGCTTTTGTTAATAATACTTTACTTATTATAATC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCTATTAGCTGTAATTGCTTTTGTTAATAATACTTTACTTATTATAATC  350

seq1  AAAGCTCATTTTTTTCCACTTATACCCCAGGGCCAGTTTTCAGATGCAAT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAGCTCATTTTTTTCCACTTATACCCCAGGGCCAGTTTTCAGATGCAAT  400

seq1  TTATAAATAGATGAAAAACAATTAATAACAACAAGAAAAACCATTAATGA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTATAAATAGATGAAAAACAATTAATAACAACAAGAAAAACCATTAATGA  450

seq1  TCTTACCAACAGCACACTATGCAGTCTCCAAATTCTATATTTTAGACTAT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTTACCAACAGCACACTATGCAGTCTCCAAATTCTATATTTTAGACTAT  500

seq1  ATTTTAGACTATAAAGACTATATTACTGGAAGCTAGAAACTTAGAAGTCA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTTAGACTATAAAGACTATATTACTGGAAGCTAGAAACTTAGAAGTCA  550

seq1  AGGCTTCAGCATATATATATATATATATATATATATATATATATATACAC  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGCTTCAGCATATATATATATATATATATATATATATATATATATACAC  600

seq1  ACATATATACGTATATACGTATGTACATGTATATTCATACACACACATAT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACATATATACGTATATACGTATGTACATGTATATTCATACACACACATAT  650

seq1  ATATACATATACATATTTATTTCTAGCATGCATGTGGATGCTCTCTTATT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATATACATATACATATTTATTTCTAGCATGCATGTGGATGCTCTCTTATT  700

seq1  TAAAAAGAGACGATAGACAGAGGGGAAGACAGGCTAGATCTTATTTTCTT  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAAAAGAGACGATAGACAGAGGGGAAGACAGGCTAGATCTTATTTTCTT  750

seq1  AAAAGCCTTTTATCATGTTATTAAAAACCTCATTTATAAGTACTGACATT  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAAGCCTTTTATCATGTTATTAAAAACCTCATTTATAAGTACTGACATT  800

seq1  TTCTATGTTAAGAATTCAATATATAAATTTTGTAGGAATACATACAATCT  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTATGTTAAGAATTCAATATATAAATTTTGTAGGAATACATACAATCT  850

seq1  TTAGCAAACTACAGAATAAAAACAATTGTGAGAATAATCATAATCTTTCA  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAGCAAACTACAGAATAAAAACAATTGTGAGAATAATCATAATCTTTCA  900

seq1  AGGATGTAAAGTGAGAAGAGTAAATAAGCATAGATACACTGATAACATTT  950
      ||||||||||||||||||||||||||||||||||||||||||||||| ||
seq2  AGGATGTAAAGTGAGAAGAGTAAATAAGCATAGATACACTGATAACA-TT  949

seq1  TATTCTCAACTATGGGTCTTTGATCTCAAGTCTTTGCTTATTATTTTCCT  1000
      |||||||||||||||||| ||||||||||||||||||||||||||| |||
seq2  TATTCTCAACTATGGGTC-TTGATCTCAAGTCTTTGCTTATTATTTCCCT  998

seq1  TTATATCATGAAGGAAGACAGAGATGAGTGATTCCCACTGAAAACAGTGT  1050
      |||||||||| ||||||||||||||||||||||||||||| |||||||||
seq2  TTATATCATG-AGGAAGACAGAGATGAGTGATTCCCACTG-AAACAGTGT  1046

seq1  ACTCACCTCCTTCCCAGTTTCCTCAACATTGACATTTCACCAGCTTTCTA  1100
      ||||||||||||||||||||||||||||||||||||||| ||||||||||
seq2  ACTCACCTCCTTCCCAGTTTCCTCAACATTGACATTTCA-CAGCTTTCTA  1095

seq1  -TAGGCATCCACAGAAC-ATCTCACTCAAACATCT-GCAGTCAACATCCT  1147
       |||||||||| ||||| ||||||||||||||||| |||||| |||| ||
seq2  TTAGGCATCCA-AGAACAATCTCACTCAAACATCTGGCAGTC-ACAT-CT  1142

seq1  TCAACTG-ATGTAGGCTTAACTGGGCTCTGCTAATTGATTATGAGTTAAA  1196
      |||  || |||||||| |||   ||||||||| ||||| |||  ||||||
seq2  TCACTTGAATGTAGGCCTAAACTGGCTCTGCT-ATTGA-TATAGGTTAAA  1190

seq1  GTAGTG  1202
      | ||||
seq2  GGAGTG  1196

seq1: chr5_48026912_48028116
seq2: B6Ng01-072A16.g_67_1255 (reverse)

seq1  CTCTCTATTATTCTCACTCTATTTTAACAAAAAACTGAGCCCAAGTTTTC  50
      |||| |||||||||||||||| || |||  ||||||||| ||||||||  
seq2  CTCT-TATTATTCTCACTCTA-TTGAAC--AAAACTGAGGCCAAGTTT--  44

seq1  CTTCAGGAAGCCCAGAAAGCTT-GCAATCCTAGGATGACTTCAGATAGCT  99
      || || |||| |||| | |||| ||||||||  ||||||||  | |||||
seq2  CTCCA-GAAGGCCAG-AGGCTTGGCAATCCT-TGATGACTTTCGTTAGCT  91

seq1  TCACAGAAACAAAGGCAAAGAGGCGGAGAAGTTGGCAGAAGTTAACTCTA  149
      ||  ||||||||||||||||||||||||||||| |||| ||| |  ||||
seq2  TCCAAGAAACAAAGGCAAAGAGGCGGAGAAGTT-GCAG-AGTAACTTCTA  139

seq1  TCCACACTTGAAAGGGATAGAATTGAGAATTTTCATGCTGTTTGGAATTC  199
      | ||||  || ||||||||| |||||||| |||| |||||||||||||||
seq2  T-CACAACTGGAAGGGATAG-ATTGAGAA-TTTCCTGCTGTTTGGAATTC  186

seq1  TACAGAAATTCTGTTCCCTCTAAAAACATACGTATGCATTTTGAAGTTTT  249
      ||||||||||||||||||||| |||||||||||||||| |||||||||||
seq2  TACAGAAATTCTGTTCCCTCT-AAAACATACGTATGCA-TTTGAAGTTTT  234

seq1  ATCATCATCCATGCCAGGGATCCATTTGAATCAACAACATGAAACGCAAA  299
      ||||||||||||||||||||||||||||||||||||||||| ||||||||
seq2  ATCATCATCCATGCCAGGGATCCATTTGAATCAACAACATG-AACGCAAA  283

seq1  CCTGACTTTGGAGTGAAATGCATTTTGATTCTGCCAAATGGTTTTTGCAT  349
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTGACTTTGGAGTGAAATGCATTTTGATTCTGCCAAATGGTTTTTGCAT  333

seq1  TTAAATTTCAAAGAAATGTCAATAATATATAACTTTTATTTTCCAACATT  399
      |||||||||||||||||||||||||||||||||||||||||||| |||||
seq2  TTAAATTTCAAAGAAATGTCAATAATATATAACTTTTATTTTCCCACATT  383

seq1  AAATGAAAACAAAAATTCAATTTCTTCAATAAAATGCTCGCATTTCCAAG  449
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATGAAAACAAAAATTCAATTTCTTCAATAAAATGCTCGCATTTCCAAG  433

seq1  TGTTCACTGGGCAAATCCACATGTAATGGCTTTTAGGCATCATGTCATCC  499
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTTCACTGGGCAAATCCACATGTAATGGCTTTTAGGCATCATGTCATCC  483

seq1  CATGGGCTGTTCTGCTATGATCATTGCTATCCATGTAATATGATATTAAA  549
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATGGGCTGTTCTGCTATGATCATTGCTATCCATGTAATATGATATTAAA  533

seq1  TGAATATTTAGAAACTTAGAAAAAGAACACAGAGCCAAATAAGTCACAAA  599
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAATATTTAGAAACTTAGAAAAAGAACACAGAGCCAAATAAGTCACAAA  583

seq1  TCCATGCTTAGGAGTCTTAGAAAGAAAAAGGAGAAAACCCCAGTGGGTTG  649
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCATGCTTAGGAGTCTTAGAAAGAAAAAGGAGAAAACCCCAGTGGGTTG  633

seq1  GGTTTCTGGGAGTTGGGAAGCAAGAGGAACAATTGGTATAAACTATGTAT  699
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTTTCTGGGAGTTGGGAAGCAAGAGGAACAATTGGTATAAACTATGTAT  683

seq1  GTATAAGTTCCAAAATAACTTTAATTTCAGCTCACAAAACTATCAGGCTC  749
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTATAAGTTCCAAAATAACTTTAATTTCAGCTCACAAAACTATCAGGCTC  733

seq1  CTGCCCCTTTTCTCTTTCCTGTCAGTTCAATCTTGCTTGCTGAGGACTCC  799
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGCCCCTTTTCTCTTTCCTGTCAGTTCAATCTTGCTTGCTGAGGACTCC  783

seq1  ATTGATGCCTTGCACTTCACGTGAAGACCTCTCTACCTCATTTATCAAAG  849
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTGATGCCTTGCACTTCACGTGAAGACCTCTCTACCTCATTTATCAAAG  833

seq1  CAACATGTATGCTCTGTAAAGGGGATTCTTGGGATTTGTTTACCCCACTA  899
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAACATGTATGCTCTGTAAAGGGGATTCTTGGGATTTGTTTACCCCACTA  883

seq1  GTGTTGTAGAAAGTTTAAAGTACAAGGACAGAAATGGGCTTTAGAGTGTA  949
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGTTGTAGAAAGTTTAAAGTACAAGGACAGAAATGGGCTTTAGAGTGTA  933

seq1  GACAACCGCTTCTGTCCTCTCACTTACTGTATGCAGGCATGCTTACTTTC  999
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACAACCGCTTCTGTCCTCTCACTTACTGTATGCAGGCATGCTTACTTTC  983

seq1  TCCCGTGTACAGAATATTTGCAAAGAGCCTGTCTCTCCCTTAAGCAGATT  1049
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCCGTGTACAGAATATTTGCAAAGAGCCTGTCTCTCCCTTAAGCAGATT  1033

seq1  CCCCAGAATCCACATTTCTGCTTCTTAGGCATCACATTCTTGCTTGCTCA  1099
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCCAGAATCCACATTTCTGCTTCTTAGGCATCACATTCTTGCTTGCTCA  1083

seq1  GATTTATTTCAGAGCTCAAAGAAATGTTTAAAATGATCTCAATTAGAATT  1149
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATTTATTTCAGAGCTCAAAGAAATGTTTAAAATGATCTCAATTAGAATT  1133

seq1  CTGAGGAACTATTTCTGGGAAAATCTAGATAGATGTACCTCAATTCCAAA  1199
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGAGGAACTATTTCTGGGAAAATCTAGATAGATGTACCTCAATTCCAAA  1183

seq1  GAATTC  1205
      ||||||
seq2  GAATTC  1189