BAC Information

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BAC

Clone NameB6Ng01-072B18
Chromosome5 (Build37)
Map Location 12,443,182 - 12,444,274
singlet/doubletsinglet
Overlap geneSema3d
Upstream geneLOC100042858, LOC667974, EG667986, EG623898, EG668001, LOC668008, EG668011, LOC668017, EG668021, LOC623998, EG668043, LOC545732, LOC384144, LOC100041626, EG668059
Downstream geneLOC668015, LOC100042917, LOC668069, LOC433845, LOC625989, LOC670717, Sema3a
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-072B18.bB6Ng01-072B18.g
ACCDH889618DH889619
length1,0941,167
definitionDH889618|Mus musculus domesticus DNA, BAC clone: B6Ng01-072B18, 5' end.DH889619|Mus musculus domesticus DNA, BAC clone: B6Ng01-072B18, 3' end.
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
gaattctctcttactgtttttgatcattgttctgtccttcacaaatgagt
ctagcttgaacttacttatgaagtataatccatgtctattttaaacttac
ttataaaaggctaatactttcttaagctgcttttgataacatttcttgta
tatctattttagaagtattttgttgtattttaattagttgtatattgtac
aggttagtttttgtcaatttggtataaagacaactgagaagaagaatact
aactgtgcctcccttcgatttgcctatgggcatgttttccttatgctaac
tgatataggagggcaaagctcactggaagctgtggacagtgtcatctgtg
acctggtggacctgagttgtctgagttgtataggaaaagtagctgcaggt
gaaactgaagcaatctgacagacagcctttcttcatggttgtcccttcac
ttcttgcctttaggttcttatcttgagcccagactcctctcaatgatgga
ctataacctgtgaactacataaagctttctctccctaagttatttttgac
tttggtgcttatctcaacaaaagaaataactaacacagaaagaaaatttt
gcttcttatggaatgaatttaatcttgcctcacattaaaaaactgaaagt
aagatatgatatgaatgactcaaattatataatatataagtactatgtaa
tatatgtatcatgtaaatattatgtaatatatatttaaaaatacatatgt
aagtatatctatacatgcaaaaatcatgtcaagccatatacatatagtta
aaatttacataaaacttaacccagttgtggtaatgcacatctacattcag
gaatctaggagtcaaaagtaagtgtgcaacctctagtttgagaataatct
tagctatgtagtatgggacaagaagaggccacatagtaagactgtctcca
ggtaaattcagtgagacagctcagtggttcaaatccatactgctcttgca
gagagcccaagttcagttataaatttccacataggggttgctcacattta
gttatttctagcttctggggcctctctggcttctgcaggactat
gaattcttaactgaggaaactcgaagggctcagaaacacctaaagaaatg
ttcatcatcctaagtcatcagggaactgcaaatcaaaacgacccagagat
ttcacctcacaccagtcagaatggctaagatgaaaaactcaggagacagc
agatactggtgaggatgtggagaaggaggaacactcctccattgatggtg
ggattgcaagcttttacaaccactctggaaatttgtctcatggttcctca
gaaaattggacaaagtactacctgaggacctagctataccactcctggca
tatacccagaagatgctccaacatgaaatagggacacctacttcactata
ttcatagcagccttatttataatagccagaagctggaaagaacccagatg
tccctcaacagaggaatggatacaaaaaatgtggtacatttacacaatgg
agtactactcagccattaaaaacaattacttcatgaaatttggagcatta
gatggaacttgagaatatcatcctgagtgaggtgactcagacacaaagaa
acaaatatcatacttactgttaagtggatattagcccaaaagttcggaat
acccaaaattcaattcacagaccatatgaagcctaaaaagaaggtaaacc
aaaatatgtatgcttcagtgatttttagaagggtgaacaaaatactcaca
ggaggaaatatagagaccaagtgtgcagcagagactgaaggaaaggccat
ccagagatccatcccatatacagccaccaaactcaaatattattgtggat
gctgggaagtgctctctaataggagcctgatatggttgtcttctgagagg
ctgtgccagagcctgtgacaatacagaagaggaagctcacagccaccatt
ggacagagctcaggcgtccagatggaggagttggagaagggcctgaagag
ctgaggggttttgcagcccatggagggacaacagtgtcacaggcagatcc
cctggagcttcaggaactggaccaccacaagagtcacatggaagtgaccc
atggctctgctgcattatatgtcaagattgaactgtgactcaatggagga
agacctccggcctgaagtgtcatgcccatgtaggtaatggccaaactgga
agaatggagaatattgt
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr5_12443182_12444274
seq2: B6Ng01-072B18.b_43_1136

seq1  GAATTCTCTCTTACTGTTTTTGATCATTGTTCTGTCCTTCACAAATGAGT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTCTCTTACTGTTTTTGATCATTGTTCTGTCCTTCACAAATGAGT  50

seq1  CTAGCTTGAACTTACTTATGAAGTATAATCCATGTCTATTTTAAACTTAC  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTAGCTTGAACTTACTTATGAAGTATAATCCATGTCTATTTTAAACTTAC  100

seq1  TTATAAAAGGCTAATACTTTCTTAAGCTGCTTTTGATAACATTTCTTGTA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTATAAAAGGCTAATACTTTCTTAAGCTGCTTTTGATAACATTTCTTGTA  150

seq1  TATCTATTTTAGAAGTATTTTGTTGTATTTTAATTAGTTGTATATTGTAC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATCTATTTTAGAAGTATTTTGTTGTATTTTAATTAGTTGTATATTGTAC  200

seq1  AGGTTAGTTTTTGTCAATTTGGTATAAAGACAACTGAGAAGAAGAATACT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGTTAGTTTTTGTCAATTTGGTATAAAGACAACTGAGAAGAAGAATACT  250

seq1  AACTGTGCCTCCCTTCGATTTGCCTATGGGCATGTTTTCCTTATGCTAAC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACTGTGCCTCCCTTCGATTTGCCTATGGGCATGTTTTCCTTATGCTAAC  300

seq1  TGATATAGGAGGGCAAAGCTCACTGGAAGCTGTGGACAGTGTCATCTGTG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGATATAGGAGGGCAAAGCTCACTGGAAGCTGTGGACAGTGTCATCTGTG  350

seq1  ACCTGGTGGACCTGAGTTGTCTGAGTTGTATAGGAAAAGTAGCTGCAGGT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCTGGTGGACCTGAGTTGTCTGAGTTGTATAGGAAAAGTAGCTGCAGGT  400

seq1  GAAACTGAAGCAATCTGACAGACAGCCTTTCTTCATGGTTGTCCCTTCAC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAACTGAAGCAATCTGACAGACAGCCTTTCTTCATGGTTGTCCCTTCAC  450

seq1  TTCTTGCCTTTAGGTTCTTATCTTGAGCCCAGACTCCTCTCAATGATGGA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTTGCCTTTAGGTTCTTATCTTGAGCCCAGACTCCTCTCAATGATGGA  500

seq1  CTATAACCTGTGAACTACATAAAGCTTTCTCTCCCTAAGTTATTTTTGAC  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTATAACCTGTGAACTACATAAAGCTTTCTCTCCCTAAGTTATTTTTGAC  550

seq1  TTTGGTGCTTATCTCAACAAAAGAAATAACTAACACAGAAAGAAAATTTT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTGGTGCTTATCTCAACAAAAGAAATAACTAACACAGAAAGAAAATTTT  600

seq1  GCTTCTTATGGAATGAATTTAATCTTGCCTCACATTAAAAAACTGAAAGT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTTCTTATGGAATGAATTTAATCTTGCCTCACATTAAAAAACTGAAAGT  650

seq1  AAGATATGATATGAATGACTCAAATTATATAATATATAAGTACTATGTAA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGATATGATATGAATGACTCAAATTATATAATATATAAGTACTATGTAA  700

seq1  TATATGTATCATGTAAATATTATGTAATATATATTTAAAAATACATATGT  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATATGTATCATGTAAATATTATGTAATATATATTTAAAAATACATATGT  750

seq1  AAGTATATCTATACATGCAAAAATCATGTCAAGCCATATACATATAGTTA  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGTATATCTATACATGCAAAAATCATGTCAAGCCATATACATATAGTTA  800

seq1  AAATTTACATAAAACTTAACCCAGTTGTGGTAATGCACATCTACATTCAG  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATTTACATAAAACTTAACCCAGTTGTGGTAATGCACATCTACATTCAG  850

seq1  GAATCTAGGAGTCAAAAGTAAGTGTGCAACCTCTAGTTTGAGAATAATCT  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATCTAGGAGTCAAAAGTAAGTGTGCAACCTCTAGTTTGAGAATAATCT  900

seq1  TAGCTATGTAGTATGGGACAAGAAGAGGCCACATAGTAAGACTGTCTCCA  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGCTATGTAGTATGGGACAAGAAGAGGCCACATAGTAAGACTGTCTCCA  950

seq1  GGTAAATTCAGTGAGACAGCTCAGTGGTTCAAAATCCATACTGCTCTTGC  1000
      |||||||||||||||||||||||||||||| |||||||||||||||||||
seq2  GGTAAATTCAGTGAGACAGCTCAGTGGTTC-AAATCCATACTGCTCTTGC  999

seq1  AGAGAGCCCAAGTTCAGTTATAAATTTCCACATAGGGGTTGCTCACAATT  1050
      ||||||||||||||||||||||||||||||||||||||||||||||| ||
seq2  AGAGAGCCCAAGTTCAGTTATAAATTTCCACATAGGGGTTGCTCACATTT  1049

seq1  AGTTA-TTCTAGCTTCTGGGGC--CTCTGGGCTCTGCAGGGACTAT  1093
      ||||| ||||||||||||||||  ||||||  |||||| |||||||
seq2  AGTTATTTCTAGCTTCTGGGGCCTCTCTGGCTTCTGCA-GGACTAT  1094