BAC Information

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BAC

Clone NameB6Ng01-072D24
Chromosome5 (Build37)
Map Location 3,032,717 - 3,033,819
singlet/doubletsinglet
Overlap genenone
Upstream geneLOC171266, LOC100040892
Downstream geneLOC667565, LOC624254, LOC100040940, LOC667585, LOC100034726, Cdk6, 5830415L20Rik, 1700109H08Rik, C030048B08Rik, Pex1, Gatad1, 4930511M11Rik, Ankib1, Krit1, 4932412H11Rik, LOC100041009, LOC667617, Mterf, Akap9
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-072D24.bB6Ng01-072D24.g
ACCDH889719DH889720
length1,2401,089
definitionDH889719|Mus musculus domesticus DNA, BAC clone: B6Ng01-072D24, 5' end.DH889720|Mus musculus domesticus DNA, BAC clone: B6Ng01-072D24, 3' end.
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
gaattcttaattcttaattagcaccacagcagctttataatagtatgtta
aaactttactttgaggtgaagaaagatgattttacattaatgttttatct
tgccaaacatttgttgtgggcacatttaataaccataactaaaataagca
gctagtatttaattaccattgattataattgataacaattgaccacagaa
gtttcctctgctttctgtaaagcctttctgtttctcaccagttaatttga
atctcacttgatagcacctaacaaaggcttaagtccccctgtggtgagtt
taaggtgaggtcttagccaattaacatctggaagcttttgaaaataaaat
tttggagcaaatcaatttttctttcttagattttctgtaccacaattttc
tagtataactaaaaccctaaatattaaaaaagatattgactctgaatctt
atggagtaacaactactctccagaactttaaatctcattgtgtgaaagca
aagatttgaagtaaactttcctttagaggtattagctaataaaatacttt
cctcttaggaaacaatatacactgaaagattcaaactctcagcttcttgc
attgaagcagagacaataaaattaataaaattttttcttacataatgtaa
agctatattagccatacctagaggcaaaattttccagtgatcaccagttc
actagaagcaaatcctttacaattatcaggatgcaaaagaaaaaaacaaa
cttttaaatctataataactctatacgaaatagggaagcctgattgtaat
gccttaataagttctacagcctgattgaccttttataaatcttaagttta
aactttattatgaacaacacctgggtagatctgaaaaaaaaaaatgttgt
ttagctaaaagaaattcccctgaacgcagggaggggtgagatcccaagaa
cttccttggtcatggtttgcaaaacaaagaaacatcacacaagcttcttg
aggtgctctgaactttgcatactcaatgtaatatttttttaatctgagca
tcttgccctctgcatgaggacgatttagggaacatcactgtctatgctct
tattgaaagtcttcttaagatgacttatagtaaacgttctttaacctaag
cttggaaagttgcctgaacttagtctgcaggcaaactaggccaactatgt
cttaaggtaatttatgtaccaggcacacactactcttagg
gaattctcttactcctaacatacagtactctataacacacattcatttat
gaccctgtagaccagatactgagtaatatgcagtcatttcgctaaagctg
ctgagaaaataaaaacattcacaaaggaatataaaataaatcaggagggt
cagagccatatgcctcagttttgcttgcagtacagcatcagtggcaacca
cacagcagatacaatgaccttccaagtcatgctgggaaatagcttttgat
agatggggttgtccttgaccataaacttgctatctttttgttgttgctga
tcagacttatgtttatcatttatgtgaatggatgtttttcctactgtgta
tcctacagtatggggctcctcctgagggcagttccctcagaggctagaag
aaggaatcacatccagtcctggagatgattattaggcaccatgcgggtct
tctacagagtagcagatgctctaacctgtgaggcatctccacaccttctg
tagttgacttttgtccttccagtgcctgtgctgtattaggtgggcaggat
caactccatttgagtggagaaatctcaggagactataggtacaatgcctg
acctgcacatactcattgtcctaggctgccaggcatgtaagcagggatct
gatgttaccactgctagttctgtattcaggatcttgcctcagtatatttt
attttcagttttagagcagatcttcacctctcatgtaggatgacaatgta
gattaggcacttctgtaaaatttagatttgagattagcctcctagaagct
agattgggaaaatgaatccctcttgatagcatgaaatatttctattgttt
ctttttttaattagatcttttttatttacatttcaaatgttatccccttt
tcctgatttcccctttagaactctatctctcaccccctcccctgctcaca
accattccactctggctttctagctgcacattcccctaactggaaataga
gtcttcacggacaagggcctcttcctcattgatgaccaacaaagtcatta
tctactatataccacgatggacatgagttccacatgtgt
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr5_3032717_3033819
seq2: B6Ng01-072D24.g_68_1156

seq1  GAATTCTCTTACTCCTAACATACAGTACTCTATAACACACATTCATTTAT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTCTTACTCCTAACATACAGTACTCTATAACACACATTCATTTAT  50

seq1  GACCCTGTAGACCAGATACTGAGTAATATGCAGTCATTTCGCTAAAGCTG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACCCTGTAGACCAGATACTGAGTAATATGCAGTCATTTCGCTAAAGCTG  100

seq1  CTGAGAAAATAAAAACATTCACAAAGGAATATAAAATAAATCAGGAGGGT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGAGAAAATAAAAACATTCACAAAGGAATATAAAATAAATCAGGAGGGT  150

seq1  CAGAGCCATATGCCTCAGTTTTGCTTGCAGTACAGCATCAGTGGCAACCA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGAGCCATATGCCTCAGTTTTGCTTGCAGTACAGCATCAGTGGCAACCA  200

seq1  CACAGCAGATACAATGACCTTCCAAGTCATGCTGGGAAATAGCTTTTGAT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACAGCAGATACAATGACCTTCCAAGTCATGCTGGGAAATAGCTTTTGAT  250

seq1  AGATGGGGTTGTCCTTGACCATAAACTTGCTATCTTTTTGTTGTTGCTGA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGATGGGGTTGTCCTTGACCATAAACTTGCTATCTTTTTGTTGTTGCTGA  300

seq1  TCAGACTTATGTTTATCATTTATGTGAATGGATGTTTTTCCTACTGTGTA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAGACTTATGTTTATCATTTATGTGAATGGATGTTTTTCCTACTGTGTA  350

seq1  TCCTACAGTATGGGGCTCCTCCTGAGGGCAGTTCCCTCAGAGGCTAGAAG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCTACAGTATGGGGCTCCTCCTGAGGGCAGTTCCCTCAGAGGCTAGAAG  400

seq1  AAGGAATCACATCCAGTCCTGGAGATGATTATTAGGCACCATGCGGGTCT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGGAATCACATCCAGTCCTGGAGATGATTATTAGGCACCATGCGGGTCT  450

seq1  TCTACAGAGTAGCAGATGCTCTAACCTGTGAGGCATCTCCACACCTTCTG  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTACAGAGTAGCAGATGCTCTAACCTGTGAGGCATCTCCACACCTTCTG  500

seq1  TAGTTGACTTTTGTCCTTCCAGTGCCTGTGCTGTATTAGGTGGGCAGGAT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGTTGACTTTTGTCCTTCCAGTGCCTGTGCTGTATTAGGTGGGCAGGAT  550

seq1  CAACTCCATTTGAGTGGAGAAATCTCAGGAGACTATAGGTACAATGCCTG  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAACTCCATTTGAGTGGAGAAATCTCAGGAGACTATAGGTACAATGCCTG  600

seq1  ACCTGCACATACTCATTGTCCTAGGCTGCCAGGCATGTAAGCAGGGATCT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCTGCACATACTCATTGTCCTAGGCTGCCAGGCATGTAAGCAGGGATCT  650

seq1  GATGTTACCACTGCTAGTTCTGTATTCAGGATCTTGCCTCAGTATATTTT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATGTTACCACTGCTAGTTCTGTATTCAGGATCTTGCCTCAGTATATTTT  700

seq1  ATTTTCAGTTTTAGAGCAGATCTTCACCTCTCATGTAGGATGACAATGTA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTTCAGTTTTAGAGCAGATCTTCACCTCTCATGTAGGATGACAATGTA  750

seq1  GATTAGGCACTTCTGTAAAATTTAGATTTGAGATTAGCCTCCTAGAAGCT  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATTAGGCACTTCTGTAAAATTTAGATTTGAGATTAGCCTCCTAGAAGCT  800

seq1  AGATTGGGAAAATGAATCCCTCTTGATAGCATGAAATATTTCTATTGTTT  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGATTGGGAAAATGAATCCCTCTTGATAGCATGAAATATTTCTATTGTTT  850

seq1  CTTTTTTTAATTAGATCTTTTTTATTTACATTTCAAATGTTATCCCC-TT  899
      ||||||||||||||||||||||||||||||||||||||||||||||| ||
seq2  CTTTTTTTAATTAGATCTTTTTTATTTACATTTCAAATGTTATCCCCTTT  900

seq1  TCCTGATTTCCCCCTTTAGAACCTCCTATCTCCTCACCCCCTCCCCCTGC  949
      ||||||||| ||||||||||||   |||||| |||||||||| |||||||
seq2  TCCTGATTT-CCCCTTTAGAAC--TCTATCT-CTCACCCCCT-CCCCTGC  945

seq1  TCACCAACCATTCCACTCTGGCTTTCTAGCCTGCACATTCCCCTAAACTG  999
      ||| ||||||||||||||||||||||||| |||||||||||||| |||| 
seq2  TCA-CAACCATTCCACTCTGGCTTTCTAG-CTGCACATTCCCCT-AACT-  991

seq1  GGACATAGAGTCTTCACGGGACCAAGGGCCTCTCCTCCCATTGATGACCA  1049
      ||| |||||||||||||||   ||||||||||| | | ||||||||||||
seq2  GGAAATAGAGTCTTCACGG--ACAAGGGCCTCTTC-CTCATTGATGACCA  1038

seq1  ACAAAGTCATTATCTACTATATACACAGATGGAACCATGAGTCTCACCAT  1099
      ||||||||||||||||||||||||   ||||||  ||||||| ||  |||
seq2  ACAAAGTCATTATCTACTATATACCACGATGGA--CATGAGT-TCCACAT  1085

seq1  GTGT  1103
      ||||
seq2  GTGT  1089