BAC Information

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BAC

Clone NameB6Ng01-072H21
Chromosome5 (Build37)
Map Location 39,478,545 - 39,479,390
singlet/doubletsinglet
Overlap genenone
Upstream geneStx18, Nsg1, LOC100040397, Zfp509, Lyar, Tmem128, Otop1, Drd5, 4930487D11Rik, Slc2a9, Wdr1, 4930421P07Rik, 6820424L24Rik, Clnk
Downstream geneLOC384174, Hs3st1, EG665839
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-072H21.bB6Ng01-072H21.g
ACCDH889898DH889899
length1,248846
definitionDH889898|Mus musculus domesticus DNA, BAC clone: B6Ng01-072H21, 5' end.DH889899|Mus musculus domesticus DNA, BAC clone: B6Ng01-072H21, 3' end.
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
gaattcaacaccccactcttatcagtgatcaaatcatggaaacagaaact
aaacagacatattgaaactaacagaagttatgggccaaatgaatttaaca
gatatctatggaatattttatccctaaacaaaagagtacaccttcttttc
agcaccatgatcatggtaccttctccaaaactgaccatataattggtcac
aaaacaggcttcaacagacacaagaaaactgaaataatcccatgcatccc
atcagatgaccatggactaaggctgatcttccatagaaacaaaaacaact
gaaagcccacatacacatggaaactcaacaatgccctactcagtgataat
agtcaaggaagaaataaagaacaaaattaaagactttttagaatggaatg
aaaatgaaaccacaacatacccaaacttaagggacactatgaaagcagtg
ctaagaggaaaactcagctctgagtgcttccaaaaagaaactggagaaag
catacactaccagattaacagcatacccaaaagctctagaataaagagaa
gcaaatatacccaaggggagtagaaggcaggaaataatcaaactcagggc
aaccaagtagaaacaaaaagaactatacaacaaatcaacaaaaccaggag
ctgattctttgagaaaatcaactaaatagatgaacccttagccaaactaa
ccagagggcacagagacactatccaaattaacaaaatcagaaataaaaag
ggagatatcacaacagaaaattaggaaattcagaaaatcatcagatccta
ctacaaatgcctatattaaaaaaaaaatggaaaatttggatgaaattgac
aaatttctagacagataccaaatacctaagttaaatcacggttagataaa
ccatctaaatattcccataacccctagagaaatggaaacagtcattaata
gtctcccaaccaataaagcccaggacaagaattctatcagaccttcaaag
aagacctagtaacaatattctcacgattccacaaaaaagaaacagatgag
cagtacccaatcattctatggagccacagttaccctacatattctccttt
ggagatgaatgcgttctgtctaatcagattgtcacattcttttataagga
cttctagagaatttttctacttctatcagttaaggttccaatgattgaac
tgtaaaacaagaacctaatctgagagtaagcgaaacacgcctatgttg
gaattccataaaataaaccaaccctgcatccctggaatgaaacctacttg
gtcaggatggatgattgctctgccaagtaggcaattaaggttaaccaggc
agggcaacaataaaccggaagctgagaataagagaatgggtgatacaaat
atgagagaagagtagtacacagggcacagggttttgtagttgataactag
gcgtgtctcttattgttggtagcaatctcctaattcccgtacctccctta
attagttacacaagtggataataaacatagcctaccttgatgaatcacag
tttttagtattttatacttattcaactcatttactccttataagcccacg
aattgtctgttgtcactctcaccaatatattgatacctcctttctgttcc
tggccctcttcctctacatagtaatttgttgagagtcacttgcacaggga
catgtgactaatgactgtgactctgtattttataccctgagggaaaaaca
ccaggacctagagtaagaagctatattttgctttggagaagctctgtgac
tttatagctacatttactcatgaactgatcagttaatagccactttgaaa
aacatttccttaaagaacttggtgtttttcattgtaaacagcatgttcgg
tgggttggagattgtgacctgaattttggagacaatcatctgaactgatc
tttccattaagggaaattaaaatagtcccatgataagtagggggaaatga
ccatattttgggataaatcctcctcatttctcgatcacacgaataactcc
agtattcatatatatgtatatatgtgtgtgtgtgtgtgtgtgtgtg
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr5_39478545_39479390
seq2: B6Ng01-072H21.g_63_908

seq1  GAATTCCATAAAATAAACCAACCCTGCATCCCTGGAATGAAACCTACTTG  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCCATAAAATAAACCAACCCTGCATCCCTGGAATGAAACCTACTTG  50

seq1  GTCAGGATGGATGATTGCTCTGCCAAGTAGGCAATTAAGGTTAACCAGGC  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCAGGATGGATGATTGCTCTGCCAAGTAGGCAATTAAGGTTAACCAGGC  100

seq1  AGGGCAACAATAAACCGGAAGCTGAGAATAAGAGAATGGGTGATACAAAT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGGCAACAATAAACCGGAAGCTGAGAATAAGAGAATGGGTGATACAAAT  150

seq1  ATGAGAGAAGAGTAGTACACAGGGCACAGGGTTTTGTAGTTGATAACTAG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGAGAGAAGAGTAGTACACAGGGCACAGGGTTTTGTAGTTGATAACTAG  200

seq1  GCGTGTCTCTTATTGTTGGTAGCAATCTCCTAATTCCCGTACCTCCCTTA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCGTGTCTCTTATTGTTGGTAGCAATCTCCTAATTCCCGTACCTCCCTTA  250

seq1  ATTAGTTACACAAGTGGATAATAAACATAGCCTACCTTGATGAATCACAG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTAGTTACACAAGTGGATAATAAACATAGCCTACCTTGATGAATCACAG  300

seq1  TTTTTAGTATTTTATACTTATTCAACTCATTTACTCCTTATAAGCCCACG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTTAGTATTTTATACTTATTCAACTCATTTACTCCTTATAAGCCCACG  350

seq1  AATTGTCTGTTGTCACTCTCACCAATATATTGATACCTCCTTTCTGTTCC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATTGTCTGTTGTCACTCTCACCAATATATTGATACCTCCTTTCTGTTCC  400

seq1  TGGCCCTCTTCCTCTACATAGTAATTTGTTGAGAGTCACTTGCACAGGGA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGCCCTCTTCCTCTACATAGTAATTTGTTGAGAGTCACTTGCACAGGGA  450

seq1  CATGTGACTAATGACTGTGACTCTGTATTTTATACCCTGAGGGAAAAACA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATGTGACTAATGACTGTGACTCTGTATTTTATACCCTGAGGGAAAAACA  500

seq1  CCAGGACCTAGAGTAAGAAGCTATATTTTGCTTTGGAGAAGCTCTGTGAC  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAGGACCTAGAGTAAGAAGCTATATTTTGCTTTGGAGAAGCTCTGTGAC  550

seq1  TTTATAGCTACATTTACTCATGAACTGATCAGTTAATAGCCACTTTGAAA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTATAGCTACATTTACTCATGAACTGATCAGTTAATAGCCACTTTGAAA  600

seq1  AACATTTCCTTAAAGAACTTGGTGTTTTTCATTGTAAACAGCATGTTCGG  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACATTTCCTTAAAGAACTTGGTGTTTTTCATTGTAAACAGCATGTTCGG  650

seq1  TGGGTTGGAGATTGTGACCTGAATTTTGGAGACAATCATCTGAACTGATC  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGGTTGGAGATTGTGACCTGAATTTTGGAGACAATCATCTGAACTGATC  700

seq1  TTTCCATTAAGGGAAATTAAAATAGTCCCATGATAAGTAGGGGGAAATGA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTCCATTAAGGGAAATTAAAATAGTCCCATGATAAGTAGGGGGAAATGA  750

seq1  CCATATTTTGGGATAAATCCTCCTCATTTCTCGATCACACGAATAACTCC  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCATATTTTGGGATAAATCCTCCTCATTTCTCGATCACACGAATAACTCC  800

seq1  AGTATTCATATATATGTATATATGTGTGTGTGTGTGTGTGTGTGTG  846
      ||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTATTCATATATATGTATATATGTGTGTGTGTGTGTGTGTGTGTG  846