BAC Information

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BAC

Clone NameB6Ng01-072K15
Chromosome5 (Build37)
Map Location 31,218,448 - 31,365,109
singlet/doubletdoublet
Overlap geneEmilin1, Khk, Cgref1, Abhd1, Preb, Tcf23, Slc5a6, 0610007C21Rik, Cad
Upstream geneLOC100039369, Il6, Tyms, EG242914, Gm444, Hadha, Hadhb, Gpr113, EG384325, D5Wsu178e, Gm1060, Otof, 1700001C02Rik, 1700041E20Rik, Kcnk3, 4930471M23Rik, Cenpa, Dpysl5, Mapre3, 1110039B18Rik, 9430057O19Rik, 2310016E02Rik
Downstream geneSlc30a3, Dnajc5g, Trim54, Ucn, Mpv17, Gtf3c2, Eif2b4, Snx17, Zfp513, Ppm1g, ENSMUSG00000055424, Nrbp1, Krtcap3, Ift172, Fndc4, Gckr, Zfp512, 4930548H24Rik, Xab1, Supt7l, Slc4a1ap, Mrpl33, Rbks, LOC100040000, Bre
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-072K15.bB6Ng01-072K15.g
ACCDH890018DH890019
length9651,093
definitionDH890018|Mus musculus domesticus DNA, BAC clone: B6Ng01-072K15, 5' end.DH890019|Mus musculus domesticus DNA, BAC clone: B6Ng01-072K15, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(31,218,448 - 31,219,413)(31,364,016 - 31,365,109)
sequence
gaattcctttgagaatctctgtctgcagggaagatagttaagactacaaa
tcctagcatgcattgcaccggactacaggtcccaaccccctcccaggccc
ctggagactgcaggtcccagaatgcaatcgcctctgttgtgttctttcct
cctatgtgtatgagttaggctaggcacaccggatgcgtggtcctttcctg
ccaaagagataactgaactataattatggaaacaggaacttctggtaaac
tggctggccagccagcaccccagcaggcttgctgcaagagcctcttgttt
gtccctctggtggtttagggaagggcccagtcattgcaacagtggcatgt
gaagtactttcccacatttccattttaaactgtttgacagccctaaaagg
caggacacatagtgtcaatcgaattttccagataaggaaatggtttccaa
gaagtcaagaggtcctggggacaagttgggtggccgggtgatctaagttt
gaaatttgacatggccacttgttaaacgcattctctggaactacttgcct
aatttctctggttccccgtttcctgtgccatcaaatggcaaaagtatctg
cccaatagaaaagttttaagagctgtggtccaaatctggcccaaggacat
tcagtgaatggtatttccttccttccttccttccttccattccatacatc
cttccttccgtcccttccctccactcccttttgcccaattcatccaaagg
agagccttctgacccttgactcttgctggagttgagtaggctgagacttg
tgccatgaatctgagctctgagatccagcttgctcagtcatccgcctttc
tctctcttcagtcctgttgagtcagagaatgtgtcatcttctagatcggc
agtacagtctgatctaagatctgcacgccttcgtgttttcctgagaggga
tgaatgggcgcctaa
gaattctaggcacgggctggcatggaccaccatgtccaactaatgatctg
tattaaaggactgcagcattagggaagctgaggaccactgctctcctggt
tctagcaggacccatgggagttggaacgggtgtagaaagctcaccaacac
tcttcatgcaactcccaatcttcgtactgacacgtaggaacttgctgagg
tcccagcgaggaatctttaccacgcagtagtccaggctgggctcaaaggc
tgctgttcctcccgtaacagagtttctgagcatgaacgagttgggtgcca
aaaagacagaagaatatatagggtgagcttgcagtccctctcataggtcc
agtcttatgaataatttcaactttcccctcaccttaacatcaggattccc
ccaagttatacctgagctctggcaggggaatgcccaatgctagcttggct
gccacataggctagtggatagcctgtggccttactggccagggcagagct
tcgggagagcctggcattcacttcaatgatgtaatactgcaaatgggaga
acacagagaataagtcactgacacctggcctagaaaagggctcaaaaggg
ggaggagaaatgattgggcctctaccagggatggagagaggaaagggcct
ccccaagctccaacccaaccacgacaatcctggcttcactctagggtgag
cagggccaagaaacctcttaaccttgaggcccacagaccaaggtatgaag
gcctcagtatgagactcacctgctcagactcggggttcaaagcatactgt
acattgcactccccgacaatgcccaggtgctgagtgaccttgatagctgt
ccgtcgcagaagctggtactctctgtcattcagtgtctggctcggagcca
ccactatggattcaccagtatgaatgcccagtggtctaagttctccatgt
tgcatacctacaagtggggtcacagaggtcaccaataaaggggtcaaaag
gccaggtggctacatccccaggcctgctatattactgaagtgtttccgca
tccaccgtttaccgcaattgcataggcgtcctctcacaacctc
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr5_31218448_31219413
seq2: B6Ng01-072K15.b_49_1012

seq1  GAATTCCTTTGAGAATCTCTGTCTGCAGGGAAGATAGTTAAGACTACAAA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCCTTTGAGAATCTCTGTCTGCAGGGAAGATAGTTAAGACTACAAA  50

seq1  TCCTAGCATGCATTGCACCGGACTACAGGTCCCAACCCCCTCCCAGGCCC  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCTAGCATGCATTGCACCGGACTACAGGTCCCAACCCCCTCCCAGGCCC  100

seq1  CTGGAGACTGCAGGTCCCAGAATGCAATCGCCTCTGTTGTGTTCTTTCCT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGGAGACTGCAGGTCCCAGAATGCAATCGCCTCTGTTGTGTTCTTTCCT  150

seq1  CCTATGTGTATGAGTTAGGCTAGGCACACCGGATGCGTGGTCCTTTCCTG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTATGTGTATGAGTTAGGCTAGGCACACCGGATGCGTGGTCCTTTCCTG  200

seq1  CCAAAGAGATAACTGAACTATAATTATGGAAACAGGAACTTCTGGTAAAC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAAAGAGATAACTGAACTATAATTATGGAAACAGGAACTTCTGGTAAAC  250

seq1  TGGCTGGCCAGCCAGCACCCCAGCAGGCTTGCTGCAAGAGCCTCTTGTTT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGCTGGCCAGCCAGCACCCCAGCAGGCTTGCTGCAAGAGCCTCTTGTTT  300

seq1  GTCCCTCTGGTGGTTTAGGGAAGGGCCCAGTCATTGCAACAGTGGCATGT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCCCTCTGGTGGTTTAGGGAAGGGCCCAGTCATTGCAACAGTGGCATGT  350

seq1  GAAGTACTTTCCCACATTTCCATTTTAAACTGTTTGACAGCCCTAAAAGG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAGTACTTTCCCACATTTCCATTTTAAACTGTTTGACAGCCCTAAAAGG  400

seq1  CAGGACACATAGTGTCAATCGAATTTTCCAGATAAGGAAATGGTTTCCAA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGGACACATAGTGTCAATCGAATTTTCCAGATAAGGAAATGGTTTCCAA  450

seq1  GAAGTCAAGAGGTCCTGGGGACAAGTTGGGTGGCCGGGTGATCTAAGTTT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAGTCAAGAGGTCCTGGGGACAAGTTGGGTGGCCGGGTGATCTAAGTTT  500

seq1  GAAATTTGACATGGCCACTTGTTAAACGCATTCTCTGGAACTACTTGCCT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAATTTGACATGGCCACTTGTTAAACGCATTCTCTGGAACTACTTGCCT  550

seq1  AATTTCTCTGGTTCCCCGTTTCCTGTGCCATCAAATGGCAAAAGTATCTG  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATTTCTCTGGTTCCCCGTTTCCTGTGCCATCAAATGGCAAAAGTATCTG  600

seq1  CCCAATAGAAAAGTTTTAAGAGCTGTGGTCCAAATCTGGCCCAAGGACAT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCAATAGAAAAGTTTTAAGAGCTGTGGTCCAAATCTGGCCCAAGGACAT  650

seq1  TCAGTGAATGGTATTTCCTTCCTTCCTTCCTTCCTTCC-TTCCTTCCTTC  699
      |||||||||||||||||||||||||||||||||||||| |||| | | ||
seq2  TCAGTGAATGGTATTTCCTTCCTTCCTTCCTTCCTTCCATTCCATACATC  700

seq1  CTTCCTTCC-TTCCTTCCCTCCACTCCCTTTTGCCCAAATCATCCAAAGG  748
      ||||||||| | |||||||||||||||||||||||||| |||||||||||
seq2  CTTCCTTCCGTCCCTTCCCTCCACTCCCTTTTGCCCAATTCATCCAAAGG  750

seq1  AGAGCCTTCTGACCCTTGACTCTTGCTGGAGTTGGAGTAGGCAGAGAC-T  797
      ||||||||||||||||||||||||||||||||| |||||||| ||||| |
seq2  AGAGCCTTCTGACCCTTGACTCTTGCTGGAGTT-GAGTAGGCTGAGACTT  799

seq1  GGGCCATAGAATCTGAGCTCTGAGATCCAGC-TGCTCAGTCATCCGCCTT  846
      | ||||| ||||||||||||||||||||||| ||||||||||||||||||
seq2  GTGCCAT-GAATCTGAGCTCTGAGATCCAGCTTGCTCAGTCATCCGCCTT  848

seq1  TCTCTCTCTTCAGGTCCTGTTGAGTCAGAGAAGGTG-CAGCAGCTAGAGC  895
      |||||||||||| ||||||||||||||||||| ||| || |  ||||| |
seq2  TCTCTCTCTTCA-GTCCTGTTGAGTCAGAGAATGTGTCATCTTCTAGATC  897

seq1  GGCAGGTGAAGAGTCTGACCAAAGAGCTGCAAGGCCTTCGGGGTGTCCTG  945
      ||||   | | ||||||| | |||| |||| | ||||||| | | |||||
seq2  GGCA---GTACAGTCTGATCTAAGATCTGC-ACGCCTTCGTGTTTTCCTG  943

seq1  CAGGGGATGAATGGGCGCCTA  966
         ||||||||||||||||||
seq2  AGAGGGATGAATGGGCGCCTA  964

seq1: chr5_31364016_31365109
seq2: B6Ng01-072K15.g_66_1158 (reverse)

seq1  GAGGTGGTGAGA-GACGCCTATGGCAACTGCG--TAACGGTGAGTGCCGA  47
      ||||| |||||| ||||||||| |||| ||||   |||||||  ||| ||
seq2  GAGGTTGTGAGAGGACGCCTAT-GCAATTGCGGTAAACGGTGGATGCGGA  49

seq1  AACACTTCAG--ATATAGCAGGGCCTGGGGATGTAGCCTCCTGGGCCTTT  95
      ||||||||||  |||||||| ||||||||||||||||| ||| |||||||
seq2  AACACTTCAGTAATATAGCA-GGCCTGGGGATGTAGCCACCT-GGCCTTT  97

seq1  TGACCCCCTTTATTGGTGACCTCTGTGACCCCACTTGTAGGTATGCAACA  145
      ||| ||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGA-CCCCTTTATTGGTGACCTCTGTGACCCCACTTGTAGGTATGCAACA  146

seq1  TGGAGAACTTAGACCCACTGGGCATTCATACTGGTGAATCCATAGTGGTG  195
      ||||||||||||| ||||||||||||||||||||||||||||||||||||
seq2  TGGAGAACTTAGA-CCACTGGGCATTCATACTGGTGAATCCATAGTGGTG  195

seq1  GCTCCGAGCCAGACACTGAATGACAGAGAGTACCAGCTTCTGCGACGGAC  245
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTCCGAGCCAGACACTGAATGACAGAGAGTACCAGCTTCTGCGACGGAC  245

seq1  AGCTATCAAGGTCACTCAGCACCTGGGCATTGTCGGGGAGTGCAATGTAC  295
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCTATCAAGGTCACTCAGCACCTGGGCATTGTCGGGGAGTGCAATGTAC  295

seq1  AGTATGCTTTGAACCCCGAGTCTGAGCAGGTGAGTCTCATACTGAGGCCT  345
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTATGCTTTGAACCCCGAGTCTGAGCAGGTGAGTCTCATACTGAGGCCT  345

seq1  TCATACCTTGGTCTGTGGGCCTCAAGGTTAAGAGGTTTCTTGGCCCTGCT  395
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCATACCTTGGTCTGTGGGCCTCAAGGTTAAGAGGTTTCTTGGCCCTGCT  395

seq1  CACCCTAGAGTGAAGCCAGGATTGTCGTGGTTTGGGTTGGAGCTTGGGGA  445
      |||||||||||||||||||||||||||||| |||||||||||||||||||
seq2  CACCCTAGAGTGAAGCCAGGATTGTCGTGG-TTGGGTTGGAGCTTGGGGA  444

seq1  GGCCCTTTCCTCTCTCCATCCCTGGTAGAGGCCCAATCATTTCTCCTCCC  495
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCCCTTTCCTCTCTCCATCCCTGGTAGAGGCCCAATCATTTCTCCTCCC  494

seq1  CCTTTTGAGCCCTTTTCTAGGCCAGGTGTCAGTGACTTATTCTCTGTGTT  545
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTTTTGAGCCCTTTTCTAGGCCAGGTGTCAGTGACTTATTCTCTGTGTT  544

seq1  CTCCCATTTGCAGTATTACATCATTGAAGTGAATGCCAGGCTCTCCCGAA  595
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCCCATTTGCAGTATTACATCATTGAAGTGAATGCCAGGCTCTCCCGAA  594

seq1  GCTCTGCCCTGGCCAGTAAGGCCACAGGCTATCCACTAGCCTATGTGGCA  645
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTCTGCCCTGGCCAGTAAGGCCACAGGCTATCCACTAGCCTATGTGGCA  644

seq1  GCCAAGCTAGCATTGGGCATTCCCCTGCCAGAGCTCAGGTATAACTTGGG  695
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCAAGCTAGCATTGGGCATTCCCCTGCCAGAGCTCAGGTATAACTTGGG  694

seq1  GGAATCCTGATGTTAAGGTGAGGGGAAAGTTGAAATTATTCATAAGACTG  745
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAATCCTGATGTTAAGGTGAGGGGAAAGTTGAAATTATTCATAAGACTG  744

seq1  GACCTATGAGAGGGACTGCAAGCTCACCCTATATATTCTTCTGTCTTTTT  795
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACCTATGAGAGGGACTGCAAGCTCACCCTATATATTCTTCTGTCTTTTT  794

seq1  GGCACCCAACTCGTTCATGCTCAGAAACTCTGTTACGGGAGGAACAGCAG  845
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCACCCAACTCGTTCATGCTCAGAAACTCTGTTACGGGAGGAACAGCAG  844

seq1  CCTTTGAGCCCAGCCTGGACTACTGCGTGGTAAAGATTCCTCGCTGGGAC  895
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTTTGAGCCCAGCCTGGACTACTGCGTGGTAAAGATTCCTCGCTGGGAC  894

seq1  CTCAGCAAGTTCCTACGTGTCAGTACGAAGATTGGGAGTTGCATGAAGAG  945
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCAGCAAGTTCCTACGTGTCAGTACGAAGATTGGGAGTTGCATGAAGAG  944

seq1  TGTTGGTGAGCTTTCTACACCCGTTCCAACTCCCATGGGTCCTGCTAGAA  995
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTTGGTGAGCTTTCTACACCCGTTCCAACTCCCATGGGTCCTGCTAGAA  994

seq1  CCAGGAGAGCAGTGGTCCTCAGCTTCCCTAATGCTGCAGTCCTTTAATAC  1045
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAGGAGAGCAGTGGTCCTCAGCTTCCCTAATGCTGCAGTCCTTTAATAC  1044

seq1  AGATCATTAGTTGGACATGGTGGTCCATGCCAGCCCGTGCCTAGAATTC  1094
      |||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGATCATTAGTTGGACATGGTGGTCCATGCCAGCCCGTGCCTAGAATTC  1093