BAC Information

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BAC

Clone NameB6Ng01-072L24
Chromosome5 (Build37)
Map Location 25,215,151 - 25,353,974
singlet/doubletdoublet
Overlap geneLOC435835, Actr3b
Upstream geneNub1, 2810046M22Rik, Crygn, Rheb, Prkag2, Galntl5, E130116L18Rik, Galnt11, Mll3, Gm443, Xrcc2
Downstream geneLOC100038949, EG272714, EG545739
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-072L24.bB6Ng01-072L24.g
ACCDH890076DH890077
length1,1781,134
definitionDH890076|Mus musculus domesticus DNA, BAC clone: B6Ng01-072L24, 5' end.DH890077|Mus musculus domesticus DNA, BAC clone: B6Ng01-072L24, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(25,352,778 - 25,353,974)(25,215,151 - 25,215,878)
sequence
gaattcctcagctgacacctttcaccagccagaaagcacaggtttgctgg
gtttgcaaagactggttacaaactgcagagatatggagaggctgggacgt
tgcagctcgagaagcaagtcacctatcttaggctagctttagcccctgaa
tagccactccttgtccatctctgtgtcagaacaaacaccctttgactatc
agcctagaagatccctagtttccgccaaaccaaaagttaagacagtctac
gaacagcatttgaggcctacagaaaggctcccccatcttgctctagctgc
ctctcttatatgcccaccaatgcatttgacttgttttgacctataacttt
cttcatcctgtaaaactctgaaattgcttccacattggaacacggaatct
ggggtgaccccaatctgcatttctggccgtggtcacctaaagtgggctcc
agaatgggctcctgctcattaagggtgagagctgtctttgtcacctacag
ggagacagcctggctgcagaatctccccgagaaactttcctcagagaact
acaaaaagaggcctgcgctcctgctttgtgggctgactctcctcagagct
ctaccatactgtctgtatgtcactagggtctgaactcctcagagtctcca
acatgtctgactctacatggcattaataactgtcccccttgaatccctta
cttgagacctttcgctagccaaaaggcgtacattatatattttttgtgac
agcgtaataccaatcgttccctggtacttcctccactgtaagcaactgat
aacacacagcaactcatgcccatgctccccatgccccggcagaaccctgg
caagtgccaagaagccagaaaagccacattaactgacccacaggctctat
acaatagccaacagggtcttccctcctactggaacccttcagagccgcaa
tgcggagaggaagcacattcaaatccctggggaacattttcagatggctc
ctccttctgccacagccccatgatcaccccagcctctctcacgcaccacg
cagacgttctggtggtgaggcagatgagaatatgaaactgactgctgtca
acgaaaggcacctctatctctcagctaacaaattattaggacatgaagtg
gaattgctcctatactttctgacagaaa
gaattcagagttctgtatctaaataattttgtatcctaacttgtgttatt
aacctaaaaacatcttcttacacctaaaacatcttaaatcctaaatgatt
taagcttatagtaagactatgactatctttttgtttgttttgttttgttt
gtttttgtttttttgagacagggtttctctgtgtagtcctggctgtcctg
gaactcactctgtagaccaggctggtcttgaactcaaaaatctgcctgcc
tctgcctcccaagtgctgggattaaaggcatgtgccaccacgcccggctg
actatctagtcttaaacccatcagagacctgagaaagaataaatattacc
caactctgcaggaagtgcagggacacagctttcagaaattatagaaatga
cagaaacagctgattgccaagacagttcccagtattgtctctgtaatatt
ggggcatctatcttcattcagccctcttgcccagaatatctgacagatct
tatgtgaagcaggatttatgaaggacttgcttaccctgtcttggtggaga
ttggctattgacttccctgtgtccatttgtcctttctggacatatttctc
tgtagttgaatcatggacattttctttgcccagtgcctagcttatcacaa
ttgaagcaattgtacctggaggttattgatgttcatcatttttttgaagt
ggaatggggatattgtcaggagctgacttgtctcatagtcaaaaggcaaa
aattattttgtctttagtaataaaaataatttcaaatgccatattctgtg
atctttgaagtttttgaagaccaactatctatctatggtatatctgaagt
ttcaaacattatatattcttagctgtctactatgtgaataatcttgaaaa
aattttaatatagttaacaaaattagtgtcatgtggtggttgggatatgc
ttaacccatagggagtgatactcttaggcagtggggccttgttggctgaa
gtgtgtcacctgtgggggtagacttggagcttaaccattgcagaaaaaat
tagtttcctttttggctgattaaatgaagaagtgggaaattcctcggtcc
ccttgcaccatgccttcctggagattgccatgat
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr5_25352778_25353974
seq2: B6Ng01-072L24.b_46_1223 (reverse)

seq1  TTTCTGTCAGAAAGTTAAATGAGGGCAATCTCACTTTCATTGTCCTAAAT  50
      |||||||||||||||   ||  | |||||  ||| |||| |||||| |||
seq2  TTTCTGTCAGAAAGT---ATAGGAGCAATTCCAC-TTCA-TGTCCT-AAT  44

seq1  AATATTGTGTAGCCTGAGAGAATAGAGCTGCCTTTCGTTGTAACAGCCAG  100
      ||| |||| ||| ||||||| |||||| ||||||||||||  |||| |||
seq2  AAT-TTGT-TAG-CTGAGAG-ATAGAGGTGCCTTTCGTTG--ACAG-CAG  87

seq1  TCAGTTTCATGATTCTCATCCTGCCTCACCCACCAG-ACGTCTGGCGTGG  149
      |||||||||| |||||||| |||||||| ||||||| |||||| ||||||
seq2  TCAGTTTCAT-ATTCTCAT-CTGCCTCA-CCACCAGAACGTCT-GCGTGG  133

seq1  TTGCGTGAGAGAGGCTGGGGTGATCATGGGGCTGTGGGCAGAGGGAGGAG  199
       |||||||||||||||||||||||||||||||||| |||||| |||||||
seq2  -TGCGTGAGAGAGGCTGGGGTGATCATGGGGCTGT-GGCAGAAGGAGGAG  181

seq1  CCATCTGAAAATGTTCCCCAGGGGATTTGAATGTGCTTCCTCTCCGCATT  249
      |||||||||||||||||||| |||||||||||||||||||||||||||||
seq2  CCATCTGAAAATGTTCCCCA-GGGATTTGAATGTGCTTCCTCTCCGCATT  230

seq1  GCGGCTCTGAAGGGTTCCAGTAGGAGGGAAGACCCTGTTGGCTATTGTAT  299
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCGGCTCTGAAGGGTTCCAGTAGGAGGGAAGACCCTGTTGGCTATTGTAT  280

seq1  AGAGCCTGTGGGTCAGTTAATGTGGCTTTTCTGGCTTCTTGGCACTTGCC  349
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAGCCTGTGGGTCAGTTAATGTGGCTTTTCTGGCTTCTTGGCACTTGCC  330

seq1  AGGGTTCTGCCGGGGCATGGGGAGCATGGGCATGAGTTGCTGTGTGTTAT  399
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGGTTCTGCCGGGGCATGGGGAGCATGGGCATGAGTTGCTGTGTGTTAT  380

seq1  CAGTTGCTTACAGTGGAGGAAGTACCAGGGAACGATTGGTATTACGCTGT  449
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGTTGCTTACAGTGGAGGAAGTACCAGGGAACGATTGGTATTACGCTGT  430

seq1  CACAAAAAATATATAATGTACGCCTTTTGGCTAGCGAAAGGTCTCAAGTA  499
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACAAAAAATATATAATGTACGCCTTTTGGCTAGCGAAAGGTCTCAAGTA  480

seq1  AGGGATTCAAGGGGGACAGTTATTAATGCCATGTAGAGTCAGACATGTTG  549
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGGATTCAAGGGGGACAGTTATTAATGCCATGTAGAGTCAGACATGTTG  530

seq1  GAGACTCTGAGGAGTTCAGACCCTAGTGACATACAGACAGTATGGTAGAG  599
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGACTCTGAGGAGTTCAGACCCTAGTGACATACAGACAGTATGGTAGAG  580

seq1  CTCTGAGGAGAGTCAGCCCACAAAGCAGGAGCGCAGGCCTCTTTTTGTAG  649
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCTGAGGAGAGTCAGCCCACAAAGCAGGAGCGCAGGCCTCTTTTTGTAG  630

seq1  TTCTCTGAGGAAAGTTTCTCGGGGAGATTCTGCAGCCAGGCTGTCTCCCT  699
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTCTGAGGAAAGTTTCTCGGGGAGATTCTGCAGCCAGGCTGTCTCCCT  680

seq1  GTAGGTGACAAAGACAGCTCTCACCCTTAATGAGCAGGAGCCCATTCTGG  749
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTAGGTGACAAAGACAGCTCTCACCCTTAATGAGCAGGAGCCCATTCTGG  730

seq1  AGCCCACTTTAGGTGACCACGGCCAGAAATGCAGATTGGGGTCACCCCAG  799
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCCCACTTTAGGTGACCACGGCCAGAAATGCAGATTGGGGTCACCCCAG  780

seq1  ATTCCGTGTTCCAATGTGGAAGCAATTTCAGAGTTTTACAGGATGAAGAA  849
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTCCGTGTTCCAATGTGGAAGCAATTTCAGAGTTTTACAGGATGAAGAA  830

seq1  AGTTATAGGTCAAAACAAGTCAAATGCATTGGTGGGCATATAAGAGAGGC  899
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTTATAGGTCAAAACAAGTCAAATGCATTGGTGGGCATATAAGAGAGGC  880

seq1  AGCTAGAGCAAGATGGGGGAGCCTTTCTGTAGGCCTCAAATGCTGTTCGT  949
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCTAGAGCAAGATGGGGGAGCCTTTCTGTAGGCCTCAAATGCTGTTCGT  930

seq1  AGACTGTCTTAACTTTTGGTTTGGCGGAAACTAGGGATCTTCTAGGCTGA  999
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGACTGTCTTAACTTTTGGTTTGGCGGAAACTAGGGATCTTCTAGGCTGA  980

seq1  TAGTCAAAGGGTGTTTGTTCTGACACAGAGATGGACAAGGAGTGGCTATT  1049
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGTCAAAGGGTGTTTGTTCTGACACAGAGATGGACAAGGAGTGGCTATT  1030

seq1  CAGGGGCTAAAGCTAGCCTAAGATAGGTGACTTGCTTCTCGAGCTGCAAC  1099
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGGGGCTAAAGCTAGCCTAAGATAGGTGACTTGCTTCTCGAGCTGCAAC  1080

seq1  GTCCCAGCCTCTCCATATCTCTGCAGTTTGTAACCAGTCTTTGCAAACCC  1149
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCCCAGCCTCTCCATATCTCTGCAGTTTGTAACCAGTCTTTGCAAACCC  1130

seq1  AGCAAACCTGTGCTTTCTGGCTGGTGAAAGGTGTCAGCTGAGGAATTC  1197
      ||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCAAACCTGTGCTTTCTGGCTGGTGAAAGGTGTCAGCTGAGGAATTC  1178

seq1: chr5_25215151_25215878
seq2: B6Ng01-072L24.g_476_1203

seq1  CAGCTGATTGCCAAGACAGTTCCCAGTATTGTCTCTGTAATATTGGGGCA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGCTGATTGCCAAGACAGTTCCCAGTATTGTCTCTGTAATATTGGGGCA  50

seq1  TCTATCTTCATTCAGCCCTCTTGCCCAGAATATCTGACAGATCTTATGTG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTATCTTCATTCAGCCCTCTTGCCCAGAATATCTGACAGATCTTATGTG  100

seq1  AAGCAGGATTTATGAAGGACTTGCTTACCCTGTCTTGGTGGAGATTGGCT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGCAGGATTTATGAAGGACTTGCTTACCCTGTCTTGGTGGAGATTGGCT  150

seq1  ATTGACTTCCCTGTGTCCATTTGTCCTTTCTGGACATATTTCTCTGTAGT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTGACTTCCCTGTGTCCATTTGTCCTTTCTGGACATATTTCTCTGTAGT  200

seq1  TGAATCATGGACATTTTCTTTGCCCAGTGCCTAGCTTATCACAATTGAAG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAATCATGGACATTTTCTTTGCCCAGTGCCTAGCTTATCACAATTGAAG  250

seq1  CAATTGTACCTGGAGGTTATTGATGTTCATCATTTTTTTGAAGTGGAATG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAATTGTACCTGGAGGTTATTGATGTTCATCATTTTTTTGAAGTGGAATG  300

seq1  GGGATATTGTCAGGAGCTGACTTGTCTCATAGTCAAAAGGCAAAAATTAT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGATATTGTCAGGAGCTGACTTGTCTCATAGTCAAAAGGCAAAAATTAT  350

seq1  TTTGTCTTTAGTAATAAAAATAATTTCAAATGCCATATTCTGTGATCTTT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTGTCTTTAGTAATAAAAATAATTTCAAATGCCATATTCTGTGATCTTT  400

seq1  GAAGTTTTTGAAGACCAACTATCTATCTATGGTATATCTGAAGTTTCAAA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAGTTTTTGAAGACCAACTATCTATCTATGGTATATCTGAAGTTTCAAA  450

seq1  CATTATATATTCTTAGCTGTCTACTATGTGAATAATCTTGAAAAAAATTT  500
      |||||||||||||||||||||||||||||||||||||||| |||||||||
seq2  CATTATATATTCTTAGCTGTCTACTATGTGAATAATCTTG-AAAAAATTT  499

seq1  TAATATAGTTAACAAAATTAGTGTCATGTGGTGGTTGGAATATGCTTAAC  550
      |||||||||||||||||||||||||||||||||||||| |||||||||||
seq2  TAATATAGTTAACAAAATTAGTGTCATGTGGTGGTTGGGATATGCTTAAC  549

seq1  CCATAGGGAGTGATACTCTTAGGCAGTGTGGCCTTGTTGGCTGAAGTGTG  600
      |||||||||||||||||||||||||||| |||||||||||||||||||||
seq2  CCATAGGGAGTGATACTCTTAGGCAGTGGGGCCTTGTTGGCTGAAGTGTG  599

seq1  TCA-CTGTGGGGGTAGACTTTGAAGCTCTAACCAGTGCAG-AAGAATTAG  648
      ||| |||||||||||||| ||| |||| |||||| ||||| || ||||||
seq2  TCACCTGTGGGGGTAGAC-TTGGAGCT-TAACCATTGCAGAAAAAATTAG  647

seq1  TTTTC-TTTTGGCTGAAGTCAGATGAAGATGTGG--AATTCTCAGGTCCT  695
      ||| | ||||||||||  | | ||||||| ||||  |||||   ||||| 
seq2  TTTCCTTTTTGGCTGA--TTAAATGAAGAAGTGGGAAATTCCTCGGTCCC  695

seq1  CTTGCACCATGCCTTCCTGGAAGTTGCCATGAT  728
      |||||||||||||||||||||  ||||||||||
seq2  CTTGCACCATGCCTTCCTGGAGATTGCCATGAT  728