BAC Information

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BAC

Clone NameB6Ng01-072M08
Chromosome5 (Build37)
Map Location 12,884,591 - 12,993,981
singlet/doubletdoublet
Overlap genenone
Upstream geneLOC545732, LOC384144, LOC100041626, EG668059, Sema3d, LOC668015, LOC100042917, LOC668069
Downstream geneLOC433845, LOC625989, LOC670717, Sema3a, LOC208055, LOC626053, Speer3, EG626067, LOC668085, LOC384149, LOC384148
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-072M08.bB6Ng01-072M08.g
ACCDH890090DH890091
length1,1111,101
definitionDH890090|Mus musculus domesticus DNA, BAC clone: B6Ng01-072M08, 5' end.DH890091|Mus musculus domesticus DNA, BAC clone: B6Ng01-072M08, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(12,992,841 - 12,993,981)(12,884,591 - 12,885,700)
sequence
gaattcctctttcccccagtgagttctcttattttatatgtctgaaaggg
gctgcaagaccaagatgtgtgatgaaagcatctaagattctcaggaaaag
aaaatcagtgtataagggaagaaacaatataatattctatataagcccga
atgttttgcaaacaatttaaaccctgtccttcaaatacttgaaattgtaa
gaatatttttctttatattcagaattggatttctcctaaaatataatttt
tgttaaatcaaatagaagctttatgtgtgttgtttatagctacaaaaaac
tctactaatttattatgttaaattaagatgctactatttaaatgtatatt
attttatgaccagaactttcaacattaatatctactatataacttaattt
aaataaaatacttgtaaaactataacgtaaatagttatgacaatggcgtt
ttccaaataaggaaacccacattagtttcctgtgcgtaatattaatgttt
tcctaaaaaaattccacatatcatctatcaaaaacccgattcattacttt
tttaaaactagcactatgagttaagaagactcggtgactgtgtgttttga
gggtaaactagtgatttctatctagaaacttgatgatatcacattttcca
ccatgctctcgcacaaaagcatatttatacatctcaaagttgagcttcga
gttgcattgacaataacacagaaattctcacacagaagaaaaagcagcag
agagttactttaggagagattataaatttctgcattcaacacaagagact
gagtttgtgggaaggtcgagtgatcctggtaaggaactacataagtgatg
ccagtctcacaaaggcaggaaaatgaaccaaatatcctggctaaaactaa
agacgtcaatacctggagtctaactttctccggtaccagactggtttagt
ccaatctcctcttttcttcattgcttgatctcacacttgtttcatacagc
aatcttgtcaatctcaattttgtatcgtgcttcaacaggctgtactttag
aactttgaaatgatattaaaatatgttaaattatttcaaactaaaatcaa
aatttattata
gaattcaattgtgtattacaatcactgaagaacaagatatatctcactac
tacataaagacttacattttacagaaagttaataatataattgaactttt
ctggttgagtcatttatttatgtattaaataaatacctaaagaaaagtga
ctcacaaatcaatactatttacacgtacaaaaaatcttcacagatatttc
tttatatctcctcaacattttttccttcagtaggttcattgttgtcattt
ttattattaacagtggatcaaatgattcataattggtgaaaaagtttcta
aattcagtttttttctaactcctagcctgatatgtttccacacatcctcc
ctcttagttgctttaaactttaaaatatccatttatggaaagccttctgt
actttctctaacagctccatttatagttttattcacaaacatgtatatta
ggtacacaatatgttttggaatactcgcatcatggaattgttaagttgaa
taattaaagtgtgcattgcatcacatatttcacaataatatgtacacata
tggtttgtatggttttaagagtaagaaaccttagaaagtaaaagaatgaa
agatttctttctcatgatttattggtgaagcaaaagtccttgctttttaa
ttttaacaagaaataatctttccaaccagaaataaaagcctctcaagatt
atcaacttaaataaatagtaaaaatatgactggtcactctggagtatcag
tgtgtatactgggggagtaatttcatgactcaagtaaagccattgagaaa
ttgtaacacagtccatatgcttggcttttgaagtctgcttagtactccat
tagggattctcaacttgtacttctcaatctgacttccatgagacacaggc
tctgctcagtgaaagacctgatgcaaacacaccatggtaattccataata
acttatgggggcataaagcttaccagcagcttgcctctaagtaatgatct
ttaccgctgcctataaaatggaccttatgttttatttgtagtcattctgg
gcaataataaacttgaattggggcacttaggttttggataagtacattct
t
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr5_12992841_12993981
seq2: B6Ng01-072M08.b_45_1155 (reverse)

seq1  TATAATAAAATATTTTGATTTTTATGGTTTTAAAATAATATTAACATTAT  50
      ||||||||   |||||||||||      ||| ||||||| |||||| |||
seq2  TATAATAA---ATTTTGATTTT----AGTTTGAAATAAT-TTAACA-TAT  41

seq1  TTTATATATCAATTTCAAAGTTTCTTAAAGGTACAGCCTGGTTTTGAAGG  100
      |||| ||||| ||||||||| ||||  || ||||||||||   ||||| |
seq2  TTTA-ATATC-ATTTCAAAG-TTCT--AAAGTACAGCCTG---TTGAA-G  82

seq1  CACGATACAAAATTTGAAGATTGACAAAGATTTGCTGTAATGAAAACAAG  150
      ||||||||||||||   |||||||| |||| ||||||| ||| |||||||
seq2  CACGATACAAAATT--GAGATTGAC-AAGA-TTGCTGT-ATG-AAACAAG  126

seq1  TGTTGAAGATCAAAGCAATGGAAGAAAAAGAGGAGATTGGACTAAACCAG  200
      |||   ||||| ||||||| |||| |||||||||||||||||||||||||
seq2  TGT--GAGATC-AAGCAAT-GAAG-AAAAGAGGAGATTGGACTAAACCAG  171

seq1  TCTGGTACCGGAGAAAAGTTAGACTCCAGGTATTGACGTCTTTAGTTTTA  250
      ||||||||||||| ||||||||||||||||||||||||||||||||||||
seq2  TCTGGTACCGGAG-AAAGTTAGACTCCAGGTATTGACGTCTTTAGTTTTA  220

seq1  GCCAGGATATTTGGTTCATTTTCCTGCCTTTGTGAGACTGGCATCACTTA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCAGGATATTTGGTTCATTTTCCTGCCTTTGTGAGACTGGCATCACTTA  270

seq1  TGTAGTTCCTTACCAGGATCACTCGACCTTCCCACAAACTCAGTCTCTTG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTAGTTCCTTACCAGGATCACTCGACCTTCCCACAAACTCAGTCTCTTG  320

seq1  TGTTGAATGCAGAAATTTATAATCTCTCCTAAAGTAACTCTCTGCTGCTT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTTGAATGCAGAAATTTATAATCTCTCCTAAAGTAACTCTCTGCTGCTT  370

seq1  TTTCTTCTGTGTGAGAATTTCTGTGTTATTGTCAATGCAACTCGAAGCTC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTCTTCTGTGTGAGAATTTCTGTGTTATTGTCAATGCAACTCGAAGCTC  420

seq1  AACTTTGAGATGTATAAATATGCTTTTGTGCGAGAGCATGGTGGAAAATG  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACTTTGAGATGTATAAATATGCTTTTGTGCGAGAGCATGGTGGAAAATG  470

seq1  TGATATCATCAAGTTTCTAGATAGAAATCACTAGTTTACCCTCAAAACAC  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGATATCATCAAGTTTCTAGATAGAAATCACTAGTTTACCCTCAAAACAC  520

seq1  ACAGTCACCGAGTCTTCTTAACTCATAGTGCTAGTTTTAAAAAAGTAATG  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAGTCACCGAGTCTTCTTAACTCATAGTGCTAGTTTTAAAAAAGTAATG  570

seq1  AATCGGGTTTTTGATAGATGATATGTGGAATTTTTTTAGGAAAACATTAA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATCGGGTTTTTGATAGATGATATGTGGAATTTTTTTAGGAAAACATTAA  620

seq1  TATTACGCACAGGAAACTAATGTGGGTTTCCTTATTTGGAAAACGCCATT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATTACGCACAGGAAACTAATGTGGGTTTCCTTATTTGGAAAACGCCATT  670

seq1  GTCATAACTATTTACGTTATAGTTTTACAAGTATTTTATTTAAATTAAGT  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCATAACTATTTACGTTATAGTTTTACAAGTATTTTATTTAAATTAAGT  720

seq1  TATATAGTAGATATTAATGTTGAAAGTTCTGGTCATAAAATAATATACAT  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATATAGTAGATATTAATGTTGAAAGTTCTGGTCATAAAATAATATACAT  770

seq1  TTAAATAGTAGCATCTTAATTTAACATAATAAATTAGTAGAGTTTTTTGT  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAAATAGTAGCATCTTAATTTAACATAATAAATTAGTAGAGTTTTTTGT  820

seq1  AGCTATAAACAACACACATAAAGCTTCTATTTGATTTAACAAAAATTATA  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCTATAAACAACACACATAAAGCTTCTATTTGATTTAACAAAAATTATA  870

seq1  TTTTAGGAGAAATCCAATTCTGAATATAAAGAAAAATATTCTTACAATTT  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTAGGAGAAATCCAATTCTGAATATAAAGAAAAATATTCTTACAATTT  920

seq1  CAAGTATTTGAAGGACAGGGTTTAAATTGTTTGCAAAACATTCGGGCTTA  1000
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAGTATTTGAAGGACAGGGTTTAAATTGTTTGCAAAACATTCGGGCTTA  970

seq1  TATAGAATATTATATTGTTTCTTCCCTTATACACTGATTTTCTTTTCCTG  1050
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATAGAATATTATATTGTTTCTTCCCTTATACACTGATTTTCTTTTCCTG  1020

seq1  AGAATCTTAGATGCTTTCATCACACATCTTGGTCTTGCAGCCCCTTTCAG  1100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAATCTTAGATGCTTTCATCACACATCTTGGTCTTGCAGCCCCTTTCAG  1070

seq1  ACATATAAAATAAGAGAACTCACTGGGGGAAAGAGGAATTC  1141
      |||||||||||||||||||||||||||||||||||||||||
seq2  ACATATAAAATAAGAGAACTCACTGGGGGAAAGAGGAATTC  1111

seq1: chr5_12884591_12885700
seq2: B6Ng01-072M08.g_68_1168

seq1  GAATTCAATTGTGTATTACAATCACTGAAGAACAAGATATATCTCACTAC  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCAATTGTGTATTACAATCACTGAAGAACAAGATATATCTCACTAC  50

seq1  TACATAAAGACTTACATTTTACAGAAAGTTAATAATATAATTGAACTTTT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACATAAAGACTTACATTTTACAGAAAGTTAATAATATAATTGAACTTTT  100

seq1  CTGGTTGAGTCATTTATTTATGTATTAAATAAATACCTAAAGAAAAGTGA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGGTTGAGTCATTTATTTATGTATTAAATAAATACCTAAAGAAAAGTGA  150

seq1  CTCACAAATCAATACTATTTACACGTACAAAAAATCTTCACAGATATTTC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCACAAATCAATACTATTTACACGTACAAAAAATCTTCACAGATATTTC  200

seq1  TTTATATCTCCTCAACATTTTTTCCTTCAGTAGGTTCATTGTTGTCATTT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTATATCTCCTCAACATTTTTTCCTTCAGTAGGTTCATTGTTGTCATTT  250

seq1  TTATTATTAACAGTGGATCAAATGATTCATAATTGGTGAAAAAGTTTCTA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTATTATTAACAGTGGATCAAATGATTCATAATTGGTGAAAAAGTTTCTA  300

seq1  AATTCAGTTTTTTTCTAACTCCTAGCCTGATATGTTTCCACACATCCTCC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATTCAGTTTTTTTCTAACTCCTAGCCTGATATGTTTCCACACATCCTCC  350

seq1  CTCTTAGTTGCTTTAAACTTTAAAATATCCATTTATGGAAAGCCTTCTGT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCTTAGTTGCTTTAAACTTTAAAATATCCATTTATGGAAAGCCTTCTGT  400

seq1  ACTTTCTCTAACAGCTCCATTTATAGTTTTATTCACAAACATGTATATTA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTTTCTCTAACAGCTCCATTTATAGTTTTATTCACAAACATGTATATTA  450

seq1  GGTACACAATATGTTTTGGAATACTCGCATCATGGAATTGTTAAGTTGAA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTACACAATATGTTTTGGAATACTCGCATCATGGAATTGTTAAGTTGAA  500

seq1  TAATTAAAGTGTGCATTGCATCACATATTTCACAATAATATGTACACATA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAATTAAAGTGTGCATTGCATCACATATTTCACAATAATATGTACACATA  550

seq1  TGGTTTGTATGGTTTTAAGAGTAAGAAACCTTAGAAAGTAAAAGAATGAA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGTTTGTATGGTTTTAAGAGTAAGAAACCTTAGAAAGTAAAAGAATGAA  600

seq1  AGATTTCTTTCTCATGATTTATTGGTGAAGCAAAAGTCCTTGCTTTTTAA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGATTTCTTTCTCATGATTTATTGGTGAAGCAAAAGTCCTTGCTTTTTAA  650

seq1  TTTTAACAAGAAATAATCTTTCCAACCAGAAATAAAAGCCTCTCAAGATT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTAACAAGAAATAATCTTTCCAACCAGAAATAAAAGCCTCTCAAGATT  700

seq1  ATCAACTTAAATAAATAGTAAAAATATGACTGGTCACTCTGGAGTATCAG  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCAACTTAAATAAATAGTAAAAATATGACTGGTCACTCTGGAGTATCAG  750

seq1  TGTGTATACTGGGGGAGTAATTTCATGACTCAAGTAAAGCCATTGAGAAA  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTGTATACTGGGGGAGTAATTTCATGACTCAAGTAAAGCCATTGAGAAA  800

seq1  TTGTAACACAGTCCATATGCTTGGCTTTTGAAGTCTGCTTAGTACTCCAT  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGTAACACAGTCCATATGCTTGGCTTTTGAAGTCTGCTTAGTACTCCAT  850

seq1  TAGGGATTCTCAACTTGTACTTCTCAATCTGACTTCCATGAGACACAGGC  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGGGATTCTCAACTTGTACTTCTCAATCTGACTTCCATGAGACACAGGC  900

seq1  TCTGCTCAGTGAAAAGACCTGATGCAAACACACCATGGTTAATTCCATAA  950
      ||||||||||| |||||||||||||||||||||||||| |||||||||||
seq2  TCTGCTCAGTG-AAAGACCTGATGCAAACACACCATGG-TAATTCCATAA  948

seq1  TAACTTATGAGGGCAATAAAGCTTTACCAGCAGCTTGCCTCTTAAGTAAT  1000
      ||||||||| |||| ||||||| |||||||||||||||||| ||||||||
seq2  TAACTTATGGGGGC-ATAAAGC-TTACCAGCAGCTTGCCTC-TAAGTAAT  995

seq1  GATCTTTTACGCTGCCTTATAAAATTGAACTTATGTTTTATTTGTAAGTC  1050
      |||||||  ||||||| |||||||| || |||||||||||||||| ||||
seq2  GATCTTTACCGCTGCC-TATAAAATGGACCTTATGTTTTATTTGT-AGTC  1043

seq1  ATTCTGGGC-ATAATAAACTTGAATTTGGGGCACTTAGTTTTGTGTTTTA  1099
      ||||||||| |||||||||||||| ||||||||||||| |||  |   ||
seq2  ATTCTGGGCAATAATAAACTTGAA-TTGGGGCACTTAGGTTTTGG--ATA  1090

seq1  AGTACATTCTT  1110
      |||||||||||
seq2  AGTACATTCTT  1101