BAC Information

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BAC

Clone NameB6Ng01-072O01
Chromosome5 (Build37)
Map Location 12,713,424 - 12,843,635
singlet/doubletdoublet
Overlap genenone
Upstream geneLOC668017, EG668021, LOC623998, EG668043, LOC545732, LOC384144, LOC100041626, EG668059, Sema3d, LOC668015, LOC100042917, LOC668069
Downstream geneLOC433845, LOC625989, LOC670717, Sema3a, LOC208055, LOC626053, Speer3, EG626067, LOC668085
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-072O01.bB6Ng01-072O01.g
ACCDH890166DH890167
length880451
definitionDH890166|Mus musculus domesticus DNA, BAC clone: B6Ng01-072O01, 5' end.DH890167|Mus musculus domesticus DNA, BAC clone: B6Ng01-072O01, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(12,842,761 - 12,843,635)(12,713,424 - 12,713,879)
sequence
gaattcacttttcagctttactacatggtaactttcacaaatgcacatta
gcatccttgtgatatttcatcgagggctcaagtagaatgaattgttttta
ggtgtattaatatttaatcctaattgaattaatgaaaacaaaatttcagg
cacttagggatattgaaatcaattaatatatcagttgttcataaaatttt
acaacatccagatgatgaatgtagaatagcctaaactacaactatgtaac
ccaaatccttaaaatatcttatttcatcacacacacacacatatatatat
atatatatatatatatatatatatatataacatattcttaaatatataga
tacaacctactcagtctcttaggttttattgctatgtatattatataatt
tatttatatccaggatttgccaagagaacaaatatatctagagatatgag
gtagatattaataaatgaaaagtgtctcttccactgaacatggatcaaca
gtcttcagtaaaataactataaataaaatttaccttcaaacaaattcaac
ataaaattacagtaaaataattattttatttataaacaattgggtaattt
tatgtacaattttcaactttcacaatttttcttttagaaatattttcttg
ttctttttacatgggggaatggagaatcagggaaattacatcacttttca
aaattattaagatactgttttctacactggatcacttcatttgttctgac
taaatatttttgcagttacatgttcttttattttttattcaaatctccaa
aatgagtgtgagataattttgctactgcaaattgatgaaatatatgctca
tagcttacattcagcaacacaaacatcttt
aaatgaatttaacaagaagtactgacaactttttatttttttccttatgt
accatctttatttttttttcatttaatctttttctacagtccacctttta
tcttcccccacccgtccaccttctgactgttccacaccaaatacctcctc
ctcccatctccataaggatatccccaccctgtcaaaccacagcccggcgc
cctccccactctctggggtcaccattctcttgagggttaggtgcatcttc
tctgactgagttcaaacctggcagtccttatctgtgtatgtgttgagggc
ctcatatcagctaatacatgatgcctggttggtggctcatttctgataga
actcaggggtccaggttgttgagactgttggtcttcccatggtgctaccc
tccgcctcagcttcttctaggctttccttaattcaaccataggggttcct
t
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr5_12842761_12843635
seq2: B6Ng01-072O01.b_49_928 (reverse)

seq1  AAAGATGTTTGTGTTGCTGAATGTTAGCTATGAGCATATATTTCATCAAT  50
      |||||||||||||||||||||||| |||||||||||||||||||||||||
seq2  AAAGATGTTTGTGTTGCTGAATGTAAGCTATGAGCATATATTTCATCAAT  50

seq1  TTGCAGTAGCAAAATTATCTCACACTCATTTTAGGAGATTTG-ATTAAAA  99
      |||||||||||||||||||||||||||||||| ||||||||| || ||||
seq2  TTGCAGTAGCAAAATTATCTCACACTCATTTT-GGAGATTTGAATAAAAA  99

seq1  ATAAAAGAACATGTAACTGC-AAAATATTTAGTCAGAACAAATGAAGTGA  148
      |||||||||||||||||||| |||||||||||||||||||||||||||||
seq2  ATAAAAGAACATGTAACTGCAAAAATATTTAGTCAGAACAAATGAAGTGA  149

seq1  TCCAGTGTAG-AAACAGTATCTTAATAATTTTG-AAAGTGATGTAATTTC  196
      |||||||||| |||||||||||||||||||||| ||||||||||||||||
seq2  TCCAGTGTAGAAAACAGTATCTTAATAATTTTGAAAAGTGATGTAATTTC  199

seq1  CCTGATTCTCCATTCCCCCATGT-AAAAGAACAAGAAAATATTTCTAAAA  245
      ||||||||||||||||||||||| ||||||||||||||||||||||||||
seq2  CCTGATTCTCCATTCCCCCATGTAAAAAGAACAAGAAAATATTTCTAAAA  249

seq1  G-AAAATTGTGAAAGTTGAAAATTGTACATAAAATTACCCAATTGTTTAT  294
      | ||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAAAATTGTGAAAGTTGAAAATTGTACATAAAATTACCCAATTGTTTAT  299

seq1  AAATAAAATAATTATTTTACTGTAATTTTATGTTGAATTTGTTTGAAGGT  344
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATAAAATAATTATTTTACTGTAATTTTATGTTGAATTTGTTTGAAGGT  349

seq1  AAATTTTATTTATAGTTATTTTACTGAAGACTGTTGATCCATGTTCAGTG  394
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATTTTATTTATAGTTATTTTACTGAAGACTGTTGATCCATGTTCAGTG  399

seq1  GAAGAGACACTTTTCATTTATTAATATCTACCTCATATCTCTAGATATAT  444
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAGAGACACTTTTCATTTATTAATATCTACCTCATATCTCTAGATATAT  449

seq1  TTGTTCTCTTGGCAAATCCTGGATATAAATAAATTATATAATATACATAG  494
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGTTCTCTTGGCAAATCCTGGATATAAATAAATTATATAATATACATAG  499

seq1  CAATAAAACCTAAGAGACTGAGTAGGTTGTATCTATATATTTAAGAATAT  544
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAATAAAACCTAAGAGACTGAGTAGGTTGTATCTATATATTTAAGAATAT  549

seq1  GTTATATATATATATATATATATATATATATATATATATATGTGTGTGTG  594
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTATATATATATATATATATATATATATATATATATATATGTGTGTGTG  599

seq1  TGTGATGAAATAAGATATTTTAAGGATTTGGGTTACATAGTTGTAGTTTA  644
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTGATGAAATAAGATATTTTAAGGATTTGGGTTACATAGTTGTAGTTTA  649

seq1  GGCTATTCTACATTCATCATCTGGATGTTGTAAAATTTTATGAACAACTG  694
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCTATTCTACATTCATCATCTGGATGTTGTAAAATTTTATGAACAACTG  699

seq1  ATATATTAATTGATTTCAATATCCCTAAGTGCCTGAAATTTTGTTTTCAT  744
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATATATTAATTGATTTCAATATCCCTAAGTGCCTGAAATTTTGTTTTCAT  749

seq1  TAATTCAATTAGGATTAAATATTAATACACCTAAAAACAATTCATTCTAC  794
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAATTCAATTAGGATTAAATATTAATACACCTAAAAACAATTCATTCTAC  799

seq1  TTGAGCCCTCGATGAAATATCACAAGGATGCTAATGTGCATTTGTGATAG  844
      ||||||||||||||||||||||||||||||||||||||||||||||| ||
seq2  TTGAGCCCTCGATGAAATATCACAAGGATGCTAATGTGCATTTGTGAAAG  849

seq1  TTACCATGTAGTAAAGCTGAAAAGTGAATTC  875
      |||||||||||||||||||||||||||||||
seq2  TTACCATGTAGTAAAGCTGAAAAGTGAATTC  880

seq1: chr5_12713424_12713879
seq2: B6Ng01-072O01.g_68_523

seq1  GAATTCAAATGAATTAAACAAGAAGTACTGACAACTTTTTATTTTTTTCC  50
      ||||||||||||||| ||||||||||||||||||||||||||||||||||
seq2  GAATTCAAATGAATTTAACAAGAAGTACTGACAACTTTTTATTTTTTTCC  50

seq1  TTATGTACCATCTTTATTTTTTTTTCATTTAATCTTTTTCTACAGTCCAC  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTATGTACCATCTTTATTTTTTTTTCATTTAATCTTTTTCTACAGTCCAC  100

seq1  CTTTTATCTTCCCCCACCCGTCCACCTTCTGACTGTTCCACACCAAATAC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTTTATCTTCCCCCACCCGTCCACCTTCTGACTGTTCCACACCAAATAC  150

seq1  CTCCTCCTCCCATCTCCATAAGGATATCCCCACCCTGTCAAACCACAGCC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCCTCCTCCCATCTCCATAAGGATATCCCCACCCTGTCAAACCACAGCC  200

seq1  CGGCGCCCTCCCCACTCTCTGGGGTCACCATTCTCTTGAGGGTTAGGTGC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGGCGCCCTCCCCACTCTCTGGGGTCACCATTCTCTTGAGGGTTAGGTGC  250

seq1  ATCTTCTCTGACTGAGTTCAAACCTGGCAGTCCTTAGCTGTGTATGTGTT  300
      |||||||||||||||||||||||||||||||||||| |||||||||||||
seq2  ATCTTCTCTGACTGAGTTCAAACCTGGCAGTCCTTATCTGTGTATGTGTT  300

seq1  GAGGGCCTCATATCAGCTAATACATGATGCCTGGTTGGTGGCTCAGTTCT  350
      ||||||||||||||||||||||||||||||||||||||||||||| ||||
seq2  GAGGGCCTCATATCAGCTAATACATGATGCCTGGTTGGTGGCTCATTTCT  350

seq1  GAGAGAACTCAGGGGTCCAGGTTGTTGAGACTGTTGGTCTTCCCATGGTG  400
      || |||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATAGAACTCAGGGGTCCAGGTTGTTGAGACTGTTGGTCTTCCCATGGTG  400

seq1  CTACCCTCCGCCTCAGCTTCTTCTAGGCTTTCCTTAATTCAACCATAGGG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTACCCTCCGCCTCAGCTTCTTCTAGGCTTTCCTTAATTCAACCATAGGG  450

seq1  GTTCCT  456
      ||||||
seq2  GTTCCT  456